Array 1 113914-114348 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FOPS01000004.1 Neisseria elongata subsp. elongata strain ATCC 25295, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	================================	===========================================	==================
    113914	    32	  96.9	    33	...........T....................	ATGTTTCTGGGCGATGATGTAGCCTTGGTACAG          	
    113979	    32	  96.9	    43	G...............................	TCGTAAATGCGGCCAAACCACGGCAGGCCGAAGTCAGCCGCCT	
    114054	    32	  96.9	    34	T...............................	ATTAGCTCGAGCGTACTCATCGGTACTTCGCGGC         	
    114120	    32	 100.0	    33	................................	CATCCGTTGATCCTGATGATTTCGATGTCGATC          	
    114185	    32	  93.8	    35	............G........C..........	GAATTTTTATGCCTACGGTACTTTTGAAGCCATCC        	
    114252	    32	  96.9	    33	.....................C..........	ACTACGGCGGTTTCCTTACCGCTAGAATTGGTG          	
    114317	    32	  84.4	     0	G...............A.....A.A..A....	|                                          	
==========	======	======	======	================================	===========================================	==================
         7	    32	  95.1	    35	CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC	                                           	       

# Left flank :   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCG
# Right flank :  CGGTCGCCATCTCCTTTTGAAGAGGTATCTTGATCTACGGCGTTCAAACAGCCATAGCCAAAAAATATCCTTGCTAAAATGATCTGCTGTTTTGTCAATATTTGAAGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAAGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCTGATAAAATCGTGGACATCAGCCCCATGGGTTGTCAGACCGGTTTCTATATCGCCCTGCTGAACATGGGTGATTATGACGAGGTTTTGCAACTGATTGAAAATACATTGAAAGATGT

# Questionable array : NO	 Score: 3.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.50,-4.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,1.01   Confidence: MEDIUM] 

# Array family : I-C [Matched known repeat from this family],   
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