Array 1 8014-7437 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCI01000010.1 Streptococcus mutans strain UAB-5 NODE_10_length_64602_cov_19.5209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8013 28 100.0 33 ............................ CTGTCTCTGCAATTGTCTGCGTGACTCTGCGTC 7952 28 100.0 33 ............................ TATATTTTGGGGCTTTTACTTTTGGAGAAGTTA 7891 28 100.0 33 ............................ TAGCCCTGCTTTTCTAATTCTCGATAATTTAAA 7830 28 100.0 33 ............................ TGGGCTCTACTATAACATTTCATTTGAAGATCC 7769 28 100.0 33 ............................ TGGATAATTTTGAACAATATTTGAAGACTCAAA 7708 28 100.0 33 ............................ TATGCTTTGTTTTTAGAAGAAGGTGAAACTAAT 7647 28 100.0 33 ............................ CGGGACAGTTGCTCAGAACCAAGGATTGTATAT 7586 28 100.0 33 ............................ TATCATCAGCCAGTACTAGCTATCAGCGCTAGA 7525 28 100.0 33 ............................ TTAGATATAGTCGACAAGCAAGCGTTTGAACAA 7464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAACATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCTATATTGATTACCAATGACTTCAATCTGATAGAGGCAATTATGAAACTACTTTACACCGACATTCAATACAATATGATAGATATTTTAGCTGGGGAAGCGCAGTTGGCTGCTAAGGCTGGCAAGCGAGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92228-93055 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCI01000007.1 Streptococcus mutans strain UAB-5 NODE_7_length_112347_cov_18.9486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 92228 36 100.0 30 .................................... ACCCACGTCCGATATCTTTAGCAATCGAGA 92294 36 100.0 30 .................................... TAAAGCGTGCGCTTGCTGTTCCGTCGTTTT 92360 36 100.0 30 .................................... ATTTTGTAATGAAGAATTAGTTCTAACCAA 92426 36 100.0 30 .................................... AAGCACGCGGACTGTGACTGTAGCTATTGA 92492 36 100.0 30 .................................... AGCGGCAATCAACTACATCAAGCATCGTTA 92558 36 100.0 30 .................................... ATATTGATGTACAAGAATTACATTATGTAC 92624 36 100.0 30 .................................... ATAAGCTTAGAGATGACGCTAAAATTCGCG 92690 36 100.0 30 .................................... TTTTGCCAAGAACGCAAAAACTAAAACAGA 92756 36 100.0 30 .................................... TCGCGTGATTTCCTTTTTATCAAAGTAAAA 92822 36 100.0 30 .................................... CTAAGAAAAAAGTGACTATCAAAATAGTTA 92888 36 100.0 30 .................................... TTCTTCTGGATATCTTCTGATTTGATTTCT 92954 36 100.0 30 .................................... TGCTGGAAAGATAAGAAAGACGACAATTTA 93020 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATATTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAACAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG # Right flank : CATGTGAAAAGAAAGTAACTACTACATTTGAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //