Array 1 74556-79626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYO010000005.1 Bifidobacterium adolescentis strain MSK.7.2 NODE_5_length_188757_cov_446.215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 74556 33 100.0 33 ................................. TCCGCATCCCTTTCCTCCACGGCATCGGCGAGC 74622 33 100.0 36 ................................. CAGTTTGATGCATCGTTGAACGGAAGTTCGACGCGG 74691 33 100.0 35 ................................. CTTGTCTTATTCGGTTTCCAGGGCGTTCAACGTGA 74759 33 100.0 35 ................................. TACATCCTCGTCCGCGGCGCCACGCTCGCCTACAG 74827 33 100.0 34 ................................. AGTGTACATATCCAGCTGGATATAATCAAACCAA 74894 33 100.0 33 ................................. GTCTTCCGGCCTGATGTGCTCGTCTCGTGGAAG 74960 33 100.0 35 ................................. GGATGCACATGCCAGTTTGTAATCGGCATCATCGG 75028 33 100.0 34 ................................. GTTTTCGGCTTTGATGTCGAAAACGCCATCCTTG 75095 33 100.0 34 ................................. CAGTTGAAGCTTTACAACGCCGACCAGCCTTGCC 75162 33 100.0 34 ................................. TGAGTGTCCGTCAGATTATCGGTCAGACCCTCGA 75229 33 100.0 34 ................................. CTGTCACTTGGCTGATGCGTTCCAGATCTCCGAT 75296 33 100.0 34 ................................. TCAAGACGTTGCTCGACGAAAACAAGGCGCGTGG 75363 33 100.0 34 ................................. TCTCTTTACGTCGAACGGGGGATGCAGCCGATTC 75430 33 100.0 36 ................................. AACGCCGTCTGATTGTCGGCCAAATCCTTTTGAAGT 75499 33 100.0 33 ................................. TTCGATGGGGGAGTACCCCAAGTGGACGTGACC 75565 33 100.0 36 ................................. AAGTACGGCGGGCCCTTGCCTGCGCTCCGCCAGTTG 75634 33 100.0 38 ................................. TGTGAGAGGGTGCGTCCGGTCTTCAACCGGCGCAGCGC 75705 33 100.0 34 ................................. AATGTAAAGGAGACTAAATAATGGCTGGAGAAAC 75772 33 100.0 33 ................................. TAAGTCTTCGGCGGAGTGATCCGCCACAGGGCT 75838 33 100.0 34 ................................. AAGACCAGTTGGAAGTGCCGGTACGGACTTGGCA 75905 33 100.0 33 ................................. ACCTTGATGGCGTAGCCGTTCGTGCCATCCCTG 75971 33 100.0 35 ................................. CAACAGCGAGAAAAAATCATCGAAGACCTCATCGC 76039 33 100.0 33 ................................. GACGAGAAGGCCGGCGACCGCTACGAGCTGGTC 76105 33 100.0 34 ................................. ATGGCGAAGCGGTCGTATAGGAATTTGCGGTCAC 76172 33 100.0 35 ................................. AGGCATTCGAGGATTTGCGCCGTCTGTGCCGCATC 76240 33 100.0 35 ................................. CATGAGACTGCGCAGGAGGTTTTCAGCGCGGATGG 76308 33 100.0 35 ................................. TGATTCTGAAACTTCGGCGGATTGAATGTAATCCG 76376 33 100.0 35 ................................. ATGTCCGCAAACTGCATGGTTTGTTGGTTGCTCAA 76444 33 100.0 32 ................................. TGGACTGGCGAAGGCTCCAACGAGTCCGTGAC 76509 33 100.0 35 ................................. GGACAGGGGCCGTTCTCGGCGGGTCCGAGCACCCT 76577 33 100.0 35 ................................. ACTGCTTGCGGACTTTTACACCTACTGGCAGGGAA 76645 33 100.0 33 ................................. GCCTTTACCGGCGTGCGTGCTTTGAAAGCGTCG 76711 33 100.0 36 ................................. TGGAACATCCAATTCGACAAAGTGGAAGCATCGGAG 76780 33 100.0 33 ................................. GACTTGGCCTTGGAATCGTCAACGTCAAGCTTC 76846 33 100.0 33 ................................. ACGAGCGGCAACGGCCTGACGTTCTACGGCGAC 76912 33 100.0 34 ................................. CGAATCAAGGAAACCGCCATCACCCATTCGGACG 76979 33 100.0 34 ................................. ACGTCAATCATCACAACACCTCGATTTCGTCATT 77046 33 100.0 35 ................................. ATCATCGACGACCAGATGGCCGACGACAGGCGCAT 77114 33 100.0 34 ................................. CTCAATATCTGCAATGGCTGCTACGTGCGAATCA 77181 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 77248 33 100.0 33 ................................. TTGATCGGCACCTGATTGTCACCGGGCTTGCGG 77314 33 100.0 34 ................................. AAAACGGCGAAAATCGAATACTCGCAATTCTCCG 77381 33 100.0 34 ................................. GCTTTGTTCGTCACGGGTTTCGCGGTGCCGGTGA 77448 33 100.0 34 ................................. CTGTTCCTGTCCATCCTGAATTTCGTGGCGGGAA 77515 33 100.0 33 ................................. ACGTCGTAGGCGCTCACGGTGGCGGTGTCGTTC 77581 33 100.0 35 ................................. CATGTCTTTCCCTCCATGCTTTGCCTTAGAATGGT 77649 33 100.0 33 ................................. CTCGGTCAACGGCGTTTCGGGCGTGCGCACAAG 77715 33 100.0 34 ................................. TACTTGCCGGGCGGACTTTGCTCGGCTATTGCAG 77782 33 100.0 33 ................................. GTATTTAAGGAGACATTTTGACTCAGCAGATTC 77848 33 100.0 33 ................................. ATCGGCTATCGACCATAAGTCATCGTCGTACAT 77914 33 100.0 35 ................................. ATGCTGCCGCCTCCTGTTCGAACAATTGTTCGGCC 77982 33 100.0 33 ................................. GTCCTGACGTTGAACGACTCGCGTGCGGAACTC 78048 33 100.0 34 ................................. GCTCAGAACGGCACCATCGGCGCCGAGGCCGGAG 78115 33 100.0 33 ................................. TCCATAGCTAGTAGAGGACCTCAAACTCTGCCG 78181 33 100.0 35 ................................. TTCTGCGCGCGCTCCAGACGGGCATAGTCACGCAG 78249 33 100.0 34 ................................. ATAGCCCTTGGAATCCAACGAACGGAACTCTCTC 78316 33 100.0 32 ................................. AATCAGTGAAGCTTTGAAACCCTGCGAATCAT 78381 33 100.0 34 ................................. GTTGACGAATGGGGGGACTTGAAGCAGAAGGCGA 78448 33 100.0 34 ................................. ATCGACGAGAACGGGAAATTGGACAATGTGTCGG 78515 33 100.0 35 ................................. AGCATGGCCGCCAGGTCCGCGCCGAATTCGGCGGC 78583 33 100.0 34 ................................. GCGAGCTGGGCGGTGAACAAGAACGCCTCCGAAA 78650 33 100.0 37 ................................. AACAGACGACACTTGGGATAACATGACACCAGTAAAC 78720 33 100.0 33 ................................. GCGTTCGTGGGGAACCGCGTGTAGTTTCCTTCC 78786 33 97.0 34 ................................G GTTAACGTATACTACGAAGGAAAAGCTTCCGCAC 78853 33 100.0 34 ................................. TCTGTGTCGCGTGATTTTCAGCCGACTGTCAGTA 78920 33 100.0 36 ................................. ATGGCGCACCCTCACGACCAATAGAAAAACCTTCGG 78989 33 100.0 34 ................................. CTGACGACGTGCGGCAGACGGTCCGCGTTCACGG 79056 33 97.0 33 ........T........................ GTTATCGGACATGGAAACCTCCATCGGATTATC 79122 33 100.0 35 ................................. CAACCGGTCGGCATCGAGTACAAGGTCGAGGGCGC 79190 33 100.0 35 ................................. GACTGGGAGGGCCGGTGGCTGCGGCTGAACAAGGA 79258 33 100.0 34 ................................. GCGGATGACGCCAACAATATCCAGCCGGACGTGA 79325 33 100.0 33 ................................. TCGTACACCGTCTTCGTTGACTGCGCCGCCAAT 79391 33 100.0 35 ................................. ATCGGGAATGCGTTTCAACGCCGCGGAAAGCTGGG 79459 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 79527 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 79594 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 76 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : CCAATATTGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGCGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATAGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGCGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACA # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCTTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTTGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTTCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //