Array 1 162670-160705 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHK01000009.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F72H2 NODE_9_length_171532_cov_27.0494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162669 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162608 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162547 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162486 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162425 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162364 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162303 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162241 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162180 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162119 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162058 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161997 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161936 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161875 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161814 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161753 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161631 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161570 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161509 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161448 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161386 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161283 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161222 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161161 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161100 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161039 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160978 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160917 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160856 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160795 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160734 29 96.6 0 A............................ | A [160707] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5327-6819 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHK01000045.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F72H2 NODE_45_length_14086_cov_27.1809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5327 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5388 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5449 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5510 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5571 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5632 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5693 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5754 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5815 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5876 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5937 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5998 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6059 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6120 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6181 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6242 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6304 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6365 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6426 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6487 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6548 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6609 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6670 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6731 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6792 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //