Array 1 622068-623255 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014612.1 Streptococcus troglodytae strain TKU 31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 622068 28 100.0 34 ............................ ACACCATTTTCATTACTAACACCTCTATGTGAAA 622130 28 100.0 33 ............................ CCACATACTCTTGCGGCACCATAATCTGGGCTT 622191 28 100.0 33 ............................ TAAAAGGAGATAGGTATGCAATACGTTATACAA 622252 28 100.0 33 ............................ TTACTTGATGTTCCAAAAAGTTATAAAACTAGT 622313 28 100.0 33 ............................ TGTAATATCCTTTTTGAACTCGGTAGCACTTAC 622374 28 100.0 33 ............................ GATACTTTGACTTGGAAGCAACTGTAAAAGCTG 622435 28 100.0 33 ............................ AAACTTTTCAAACAGCTTAAATACACTGATTTG 622496 28 100.0 33 ............................ TATTATTCAAGCGGAAGATACAGAAGAATATTA 622557 28 100.0 33 ............................ CTGGGAATATCATTTTCAAAATGTAGCTCATGG 622618 28 100.0 33 ............................ CTGATTTGATAGTCTGTAAACTCTTGGTAGTCT 622679 28 100.0 33 ............................ TGAATTTTTCTCAAAATATTTATCATTAAAGTA 622740 28 100.0 33 ............................ CAGTATTAGATTTCAAGAAAAGTTATCCAATTA 622801 28 100.0 33 ............................ CAAGAGCGAGTGAGAAAGGCTAAAATTGCAAAA 622862 28 100.0 33 ............................ TGCTCTTGCTGAGGAAGCAGGTGTGCCTGAAGA 622923 28 100.0 33 ............................ TAAGATTGAAGCACTTAAACATAAGCAATCAGA 622984 28 100.0 33 ............................ TTAGGTCATCAATCTTTTGGTCAGGGACTGGTT 623045 28 100.0 33 ............................ TAGTTGCTCTAGACATGCCAGTTTCTGACTCAA 623106 28 100.0 33 ............................ CGAAGTGGTAAAGTATGAAAATAGTTTTGGGGA 623167 28 100.0 33 ............................ CGAAGTGGTAAAGTATGAAAATAGTTTTGGGGA 623228 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.8 33 ATTTTTCCCGCACGAGCGGGGGTGATCC # Left flank : TGAAAATGAAAATAGCATCATAGAAATTGGTGCTGTTAAGATCGGCCCTTCTCAACTGGAAGAGTTTAATTATCTCGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACATTCAAGTTATACTTCATGAATTTTTGAAATTTATCGGAAATCACGATCTTGTCGGATATGGGATAGATTTTGATATAAAATTTATCAATAAAAAGTTGAAAGAATTAGATCAGCCTTTATTGAAAAATAGAGTCTATGATTTAATGCAATATGCTAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTGTTAAAAGCATATGAAATAGAGGATGAGGTGCCTCACAGAGCTCTTCAAGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAAGGATCAATCAGAAGTAGCGGTTTTATTGAGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTGCACATACAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGAAAATCAAAAAATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTAAACTCTAAAATCATTATAATGAGACGAATATTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACAGGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATGACAGAGATTTTGGCCGAGGAAGCACAAATGGCTGCTAAGGCTGGCAAGCGGGTCTTTTATATTGCTCCCAATTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGTGCTTCCTTTGCTATTACCATTACGCGTTTTGCGCAAATGGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 712869-715143 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014612.1 Streptococcus troglodytae strain TKU 31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 712869 36 100.0 29 .................................... TTAATTCAGATGGATCATTTGAAACTGTA 712934 36 100.0 30 .................................... TGATCATCAAGGTTCCCGTAAAGGTGGTCA 713000 36 100.0 30 .................................... CAGTGGGCACCATAACATCAGAAATGGTTA 713066 36 100.0 30 .................................... TGAATATTATCTAACGTCAATTGTGTCTCA 713132 36 100.0 29 .................................... AGTAGAGCGCTTGGCTTGATAGAGGCATT 713197 36 94.4 30 TG.................................. ATTAGCATTTCCTGATACTTCTGATGAATT 713263 36 100.0 30 .................................... AAAAAAACCGCCGTATTAGTTGGCATACGA 713329 36 100.0 30 .................................... TCCCAAGCAGTTTTAACATTATGGCAATCT 713395 36 100.0 30 .................................... GAGTCAGACGGACATTTTGCAACTAATGTC 713461 36 100.0 30 .................................... TTAAAGAAGTCATATGAAACCTCCTTATTT 713527 36 100.0 30 .................................... GTATCGATAGTCTGCTAGTCGAAACGTATT 713593 36 100.0 30 .................................... TGGCTTTCACCGATACACAACCATGCTTAA 713659 36 100.0 28 .................................... TTTTTTAAAAAATTAAATTCAAAAAAGA 713723 36 100.0 30 .................................... TCTCCAACGATAAGCAAACGCTTCTCCGCT 713789 36 100.0 30 .................................... TTTTTTCTATAATAAGGTATATTCTTCAAA 713855 36 100.0 30 .................................... GCAAGCTTAACGCTGGATTGTCAGCAAATA 713921 36 100.0 30 .................................... GTGAAGCTAATGGGTAAAGTTATTCCACCT 713987 36 100.0 30 .................................... TCTGTACTCTTTCTAATTCCTTAGGGCTTT 714053 36 100.0 29 .................................... CTCAAAAGGTTCTTTTTAAAACTAGCTTT 714118 36 100.0 30 .................................... TTAATTGATTTCAGAGATATCACAGAGGAT 714184 36 100.0 30 .................................... TTTGCAAGAGGCGTAATGTCCGACCATTTT 714250 36 100.0 30 .................................... AATGGAACAGCAAACGAATCTAATGCCTAG 714316 36 100.0 30 .................................... TATCGTAAACGCAGTTTTAATAGAAGCGAT 714382 36 100.0 30 .................................... TCACCTCTTATTTACCTTTGTTAATCATAT 714448 36 100.0 30 .................................... TAATTCAAAAATTTTTATCAAAAACACTTG 714514 36 100.0 30 .................................... TAACCTTTCTATTTCACCCTATGACACCTT 714580 36 100.0 30 .................................... AGTCGTCGTTATTATACTTCTCACAAATAG 714646 36 100.0 30 .................................... AAAGCAATAATTAGAGCTCTGATTGCTAAA 714712 36 100.0 30 .................................... AGCAGCAATCTATTTATCTCTTTGCCGTGT 714778 36 100.0 29 .................................... TACGGTTTATAAAAAGAGCAGTTGCTTAA 714843 36 100.0 30 .................................... TTTTTAGTAAGTTTATTAAATATTAGTTGC 714909 36 100.0 31 .................................... TTTCGTGTAATACCGTTGTGTTTACAATTAG 714976 36 100.0 30 .................................... TATTAATTGCTAATAACTATGTGTATAGTT 715042 36 100.0 30 .................................... CAAAAATACTTGACATAAAAAATAAATATG 715108 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCGAAAGTTAGAAAAGTTATGTACGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGCTATTTATATGCTAGACAAAATAATATTGAGTACATAAATATTATTTCAGATTATGTAGCACATTATTATCAGTTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAAGTTCCAACGAAAGCCAATTTTTTATCTTCAATCCAAAAAATTAGTAGCTATTTGTTTAGTAAGGAAATAGAATATGTGAGTCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATAATAAAAAAATAAATTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATCTTGAAGTACAAAAACTAAAAATGACGATTTGAG # Right flank : CTGATGAAGATTATTTCTTGATAACAGAAAGCAACAACTAAATACGAATAATAAGATAGTTTCTAAATTAGGGGCTGTCTTTTATTATGGATTGACAAATGCGCATAATGCGTATAAAATAAAAGGAGAAATGTTATTTGCCATTAACAGGGAAAGAATTAGCTAAATTAGCGATAAACAATGGATGGGAAGAAGTTCGGGTGAGAGGAAGTCATCATCATTTCAAGAAAGATGGAGTACCTCATATTGTGACGATTCCCATTCATGGAAATAAAGTGCTTAAAATTGGTCTTGAAAAGAAACTCTTAAGGGATTTAAATTTATTATGATAGAGGAGGAAGTCGTCATGTTAAAAACATATCCTGCAATTTTTCATAAGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //