Array 1 5296-3766 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMD01000034.1 Acinetobacter schindleri strain GTC 3703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5295 28 100.0 32 ............................ TACCTATTGGTGCTGCTAAATCTACTGAGATT 5235 28 100.0 32 ............................ TATCCGGTAGATAGTTACATGTCTTCTGGTGG 5175 28 100.0 32 ............................ AGTGTGAGAAGTTTTCAGACTCTAGAGTATGC 5115 28 100.0 33 ............................ CTTTCAACACGCCATTTGATATGACTGTTTTGC 5054 28 100.0 32 ............................ TCCAAGAGCATCCCCGAAACGACCAATTCGAA 4994 28 100.0 32 ............................ ATGCATAGCGTTTCGAGTAAGTATTTGGCTCA 4934 28 100.0 32 ............................ AGCACTTCACCTGTTTCGATATTTCGAGCGCG 4874 28 100.0 32 ............................ AGTATTAGCCTCAATAAAAGCCTGAAGTTCAG 4814 28 100.0 32 ............................ TGTCTGAGCAGCTTTTAAAGTGCCATGTTCAT 4754 28 100.0 32 ............................ ACATCCCAGAATAAGTACGCGCAACCGGATCA 4694 28 100.0 32 ............................ AAGCCTTCAACCTCACCTTCAGATAAGCCATA 4634 28 100.0 33 ............................ ACTGTCGTTGTTGAAGAAATTGGCAATGCAGCA 4573 28 100.0 32 ............................ AATACAAATATCTATGGAAAAGCCAAATTTGA 4513 28 100.0 32 ............................ TTCTAAAGCTGGGAAATTGTAGTTTCCAACGC 4453 28 100.0 32 ............................ TGTCATGACCTTACTCCGCATCTCTGCTTTTG 4393 28 96.4 32 C........................... ACAGTTTCATAAGAGTTTTGAACTGTCATCAA 4333 28 100.0 32 ............................ ACATGCTCCAATTTATATTCTGTTTATTCGGT 4273 28 96.4 32 ................T........... ATGAAGAAATCAGAACTTTTCAAAGCAGCTCA 4213 28 100.0 32 ............................ TGAATTGGAATCAGCGAAACAGGTAGGGCGTC 4153 28 100.0 32 ............................ ACTGAATAAGCCCTCTGCTTCAGCAAAGACAT 4093 28 100.0 32 ............................ ATTCGAGCTACGCATTTGCGTCATCGTGTGAG 4033 28 100.0 32 ............................ TTGTGAGTATTGGTCAGAGAATTTCAAAATTA 3973 28 100.0 32 ............................ ATTGCAGAACACTTTCAAGAGACCATTTTTCG 3913 28 100.0 32 ............................ CAGCATAACTACCAGTCGCCTTTGGAAGCAGC 3853 28 100.0 32 ............................ TTGATTCAGTATTGCGGCATTGAAGCATCCCG 3793 28 89.3 0 ..........C............T...G | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.3 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAATATGACACGACAAATAATAGTGGACAAAAAG # Right flank : TATTATCTTCAGTAATACTTATGCAAACGAGAGTTTCTGTAAATAATTTTTGTAATAAAAAAGCCAATTATCTCAGTAAGATAATTGGCTTAAGCAAAGAGTTTGGCTATCCGCTTATTCTTCGATCATCCCAATAACACGGCACTACAATCAAATTATTTTCATGTAACCGAGACCATAATCTTACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGCAGGGTAGATTTCATATTGTCATAACGACTATACAAAACCTTATGCACCATCTCCAGGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCTATGACCAATAAATCAAAACTAGAGAAATGGTCGATAACTTCCTTCTCAGAACGTGAAGCATCTGACCAGGTGTCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGCGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 782-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMD01000035.1 Acinetobacter schindleri strain GTC 3703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 781 28 100.0 32 ............................ TTTTGAATACGGCGCTCAAGGTTCTTGTCGAA 721 28 100.0 32 ............................ ATGATTACAGTACAGCGCGAGAAATGGATTGA 661 28 100.0 32 ............................ GGTTACATCAACAGTATCTATCGATAACTCAA 601 28 100.0 32 ............................ AGAAGAACTATGCACCAATGCAGCAGACTACC 541 28 100.0 32 ............................ GTACTCTGAGAACGGCCAGCGCGAAGCTGCCC 481 28 100.0 32 ............................ AGTTAAGTGGATAGGTTCATTATTATTAAAAT 421 28 100.0 32 ............................ TGCAGATAAGCAGCTAAAGCTGGTGATCCCTG 361 28 100.0 32 ............................ AAGTTTTCCGGTAAGCTGATAATAATGGATGG 301 28 100.0 32 ............................ TGTAGAGGTTAAACGTCAAATCCAACAAGGCA 241 28 100.0 32 ............................ AAAAATATTGGTTTTAAAAGATTGAGTATCTA 181 28 100.0 32 ............................ TTTCGATTCAACAAAGGTTTATGTTGTCACTG 121 28 100.0 32 ............................ TTGCGATCATCAGTTCCCTTTTTATTGCTAGT 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGAATGACTTGCAATCAGTGACACCGTTT # Right flank : ATTCCGATATTATGGGCATTATGGGTATTTTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8832-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMD01000036.1 Acinetobacter schindleri strain GTC 3703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8831 28 100.0 32 ............................ TGTTTATTAAAATCAATCAGACTGCATTTTCT 8771 28 100.0 32 ............................ ATAATTTTGTATCTTTCATGCTGCCACCTTTT 8711 28 100.0 32 ............................ AACCCAATTCAGCACCTAGCGCATAAACACTT 8651 28 100.0 32 ............................ ATTTCATCGGCTAATTCGCTCGGCTCAACACC 8591 28 100.0 32 ............................ GGTTGAATTGGGTTTATTCCAGTTGCCTGAGA 8531 28 100.0 32 ............................ GAATATGCCGTCATTCAATTTCAGAAATTAAA 8471 28 100.0 32 ............................ AATTGGCTCAAATACTGAAAATGCTTTCCAGT 8411 28 100.0 32 ............................ ATCAAGCGGACCAATGTCACCAATGACCTTGA 8351 28 100.0 32 ............................ TGCTGATGCGAAAAAGGCTGATTTAGTCGCTC 8291 28 100.0 32 ............................ CAACCAACTGACTTCAATGCCCTAACGGTTGA 8231 28 100.0 32 ............................ TACCAAGGAAAGCGTCTGATTAAAGATGACGG 8171 28 100.0 32 ............................ AGATGGATTTGGACGACCTTGCATTGTATGCA 8111 28 100.0 32 ............................ TTGCGGAACACCTACCAGTGAACTCAAAGCTT 8051 28 100.0 32 ............................ AGTCTGGCTACTCAGCCCAGATTGGGGATGGT 7991 28 100.0 32 ............................ ATTGGCTCATCAACCTTGGCTGCTTACACGGC 7931 28 100.0 32 ............................ TTCATAACCTCGTTATATTCAGCAGTAAACAT 7871 28 100.0 32 ............................ TTCTGATACTTGCTCGCCATTAAATTGACGAG 7811 28 100.0 32 ............................ TCTGAGGGGGTATTTCAAGAATTAATCGATAT 7751 28 100.0 32 ............................ GCAATCCAAGTGTTTCAAGTGACTATCCACTT 7691 28 100.0 32 ............................ AGCAAGAAGCCACCGACATTGAAAACCGCATT 7631 28 100.0 32 ............................ TCAAGCTTCTCTTTTAACTCAGTTGGCATTCT 7571 28 100.0 32 ............................ TGCCCATTCATTCATGGCCACGGCTGACCAGA 7511 28 100.0 32 ............................ AGAGCGCCTAAGCCCTCATCGCTATCACCCAT 7451 28 100.0 32 ............................ TGCTTGAGGGAAGAACTTAATTCCTGCGTACT 7391 28 100.0 32 ............................ AACTACAGTGGTGATTGAGAGATGAGTGAGAT 7331 28 100.0 32 ............................ TCAATGCATCGCCCTCGATGGGGTCGGCAAAT 7271 28 100.0 32 ............................ ATGATCTAAGCAAGCACATTGGCACTATTGCG 7211 28 100.0 32 ............................ TTCGGAATATCTTGTTGAGGAGCAGATTGATA 7151 28 100.0 32 ............................ AATCATCTCTCAATCACCACTGTAGTTGGGCT 7091 28 100.0 32 ............................ TAGATGCATCTATCGAACCAAACTACAGCAAC 7031 28 100.0 32 ............................ AATGGCTTGCAATCGGTTTATTTGGAAGACAC 6971 28 100.0 33 ............................ AGATTGTTTCTACACCACCACCGTTCGCTTCTT 6910 28 100.0 32 ............................ TTTGTGAAGTTTCACTCTGATATTGGTCAGGT 6850 28 100.0 32 ............................ GGGAAGATTTGGCAGCACACCATGCGGTTTTT 6790 28 100.0 32 ............................ TGACTGTTCGGCCTAAGCCTAAATTTGCTTGT 6730 28 100.0 32 ............................ CAAGAGCCAGAAACACCGCTAGCCCAATCAAT 6670 28 100.0 32 ............................ TTAATCAAAATCTAAGGCGGCTTCAATCACGC 6610 28 100.0 32 ............................ TTTAATTAGATCAGGGTTTTTTAATGTCAAAA 6550 28 100.0 32 ............................ TGAATTTAATCCAAGCCAAGGAAGATGGGCAA 6490 28 100.0 32 ............................ GATCAGGCCATGATTGCAAAGACTGCATCGAT 6430 28 100.0 32 ............................ ACTAACGTTCCAGCTGCTGCATCCATCTGACG 6370 28 100.0 32 ............................ GATGGGGAATTTCGGCAATGCTATGCCGGATG 6310 28 100.0 32 ............................ TGGCCTCCAGATGAAGTCGCCTTTATCTTCTT 6250 28 100.0 32 ............................ CATCTGAGTGAGAAAACCAAGACGGAACTACT 6190 28 100.0 32 ............................ TATCTTTGCGGCATCTCTTTATTACTTGCCAA 6130 28 100.0 32 ............................ GTCACCGTATGAATAACAAGCACGATAGTCAT 6070 28 100.0 32 ............................ AGATACTTGTCTAATGCTGGTTTGGCACCAAT 6010 28 100.0 32 ............................ TTGATCGGCGGTCAATTAAATCTTAAAGGTAA 5950 28 100.0 32 ............................ CTCAAGCAGGCACTGGCATTCAAAACAAACGT 5890 28 100.0 32 ............................ ATGATGGAGTATTGGTCATATCGCCACCTATT 5830 28 100.0 32 ............................ TGACTGCGGAAAGTTTTTTGCAATTACCTCTA 5770 28 100.0 32 ............................ TAGTGAAATTATTATTAGACTGATTTCGTATA 5710 28 100.0 32 ............................ TGACATTCTAGGAAAGTCTGTAGGCTGTACTT 5650 28 100.0 32 ............................ GGAAATTCCGAAAGCGAATAATTCGGAAAATG 5590 28 100.0 32 ............................ AAACTCTAACCCAATTATCACGTATGGTAATG 5530 28 100.0 32 ............................ TGATTGATCATTCAGCCAGTCAAAAATATTGA 5470 28 100.0 32 ............................ TTTGCTTACGCGGCGGCCACCAGTGCTTACGC 5410 28 100.0 32 ............................ ATCAGTAGCGGTGCTTCATGTGCACCCTGTGC 5350 28 100.0 32 ............................ GCACAGCAGGCCGAAGCTGAAATGAAAAAGCA 5290 28 100.0 32 ............................ TGCCTGATTCATGCCGCCAAGGATCTGATCGA 5230 28 100.0 32 ............................ TGTCATCAACTGACTGACATACGATGCTTCAT 5170 28 100.0 32 ............................ TTACAGATATTTATAACCGCGACCTTTTGGCA 5110 28 100.0 33 ............................ TTGAACCCTGATGGGTCGCGTAATTGCCACTCT 5049 28 100.0 32 ............................ ATGCTCAAATTCAATTGGTGATCGCAAGTGGT 4989 28 100.0 32 ............................ ATTTATTTTTTTCCTATAAAGATATAGATGTA 4929 28 100.0 32 ............................ AACAAAAACTGGAAGATAAAATCCAGTTGTCT 4869 28 100.0 32 ............................ ATGATCTGTCATGGTTCACTTGCGCCATCTTA 4809 28 100.0 32 ............................ ATAAACTTAGGATAAATCAGGTCATTAAGCGA 4749 28 100.0 32 ............................ AGAAGTTTTGAACAATGACCGGATCTGACTTA 4689 28 100.0 32 ............................ ACCTTCTTCAGCATCCAGGATCGTGACAATCT 4629 28 100.0 32 ............................ TGGCAGTTTTGGCACTACGTGAAGCACTGGAA 4569 28 100.0 32 ............................ AGTCAGGCGTTTTTGCTTACCGAAGCCACTCC 4509 28 100.0 32 ............................ ATTAAACCGTTTTGCTTTTTTAGCCATGTGAT 4449 28 100.0 32 ............................ TTGTAATTCACTGGCGGGCGCCCACCAATATT 4389 28 100.0 32 ............................ TGTCGATGCAATGGAAAAGTTCTTCCATAAAC 4329 28 100.0 33 ............................ ATATAGCGGCTCATGCTGCCGCGAAGATAGTCC 4268 28 100.0 32 ............................ ACATACCCCTGGAATGCACGTGCCGACATTTC 4208 28 100.0 32 ............................ AATGTTCGTTATCGTCAGTTCCAAATTCAATT 4148 28 100.0 32 ............................ ATGCCCTGGTCTTTGCTACAGCATGATTACGA 4088 28 100.0 32 ............................ ATTACCTGATCCTCTGAGCGCTTCTCGAACCG 4028 28 100.0 32 ............................ TACAAGATCTTTCGGAAGCCAGGGAAGATATC 3968 28 100.0 32 ............................ TGTTTTTTGTCGCGTCTTGGCAATGCGGAAGC 3908 28 100.0 32 ............................ ACGAAACACTAAATAAGACTGATACGGATAGG 3848 28 100.0 32 ............................ CTAGAAACAACGCTAATAACGCCGTACTTAAT 3788 28 100.0 32 ............................ AATGAATATGGGAGTGATGGAGGCAATGAGGA 3728 28 100.0 32 ............................ CGTAGAATCCCTAACCACGCTTGAAACACCTC 3668 28 100.0 32 ............................ AGAACATGTCAACACTCACCCCAATTGAGTTT 3608 28 100.0 32 ............................ TGACTATGACTCGATTGCAGAATCGCAAGAAT 3548 28 100.0 32 ............................ GACCATGCGTTCGGTTTCCAACTGTCGGATAA 3488 28 100.0 33 ............................ TTCCAGCATGTCGTTGACCAGTGAACCATGCAT 3427 28 100.0 32 ............................ TTTATCCGTGGTGATAAGCATTCACCAGCAGA 3367 28 100.0 32 ............................ AACGAATGGGTGAAGAAAAACTATGGGGTATC 3307 28 100.0 32 ............................ TTTGTATAAAAACAACTTGGCAAAGCCAAAAC 3247 28 100.0 32 ............................ ATGCTGGCCAGATCGCAAGGGAAGAAGCTAAA 3187 28 100.0 32 ............................ GGCATCAGCCGCAGTAAACACCTTGCAAACAG 3127 28 100.0 32 ............................ TTCAGGATCTCGGGCCTGACGACGAATACCAC 3067 28 100.0 32 ............................ AGGATGCACGTCGTGCCTTTGCTCAGAATATG 3007 28 100.0 32 ............................ AATACCGTCGATATTTGGAGTTGGTTTTGTGA 2947 28 100.0 32 ............................ AATGATGGATGTAAGCCCTGCTGAAAATAATG 2887 28 100.0 32 ............................ TTAACCCAGGCTGCTTGCTGTTGCCCTTGTTC 2827 28 100.0 32 ............................ TAGTTCACCAACTGAACACTCAATAGATATTA 2767 28 100.0 33 ............................ ACTAAAAAAGGCCGTGACCAGATCGGATCACTC 2706 28 100.0 32 ............................ GATGTGGCTAGTACAACTCAACAGCTAATGGC 2646 28 100.0 32 ............................ TGCAGACAATACCGAACTACTGGTGCGAATCC 2586 28 100.0 32 ............................ AGTAAGGTGCCATGCTCTTTAAATCCAAAATG 2526 28 100.0 32 ............................ AACACAACAATCATTTAAAGAACCTAGATTCT 2466 28 100.0 32 ............................ AAAGTCAGAACAGGGTACAGTCATTACCGGTG 2406 28 100.0 32 ............................ GATTGAAGTACAAGCAGCTTTTTTGGCCTACA 2346 28 100.0 32 ............................ TGATAGCTGAAACCTACACACTTGTCTTCACG 2286 28 100.0 32 ............................ TTACCGATTGTAATTAACTGCCTTGGCGTAGC 2226 28 100.0 32 ............................ AACAAATTTAAGATTGCCTTGGGGCTTTTCTC 2166 28 100.0 32 ............................ TTGAGTTAGTTTTTGATGCGGGTGAATCATAT 2106 28 100.0 33 ............................ AGGCACGACTATGGCCACCGCCATCAATCCCAA 2045 28 100.0 32 ............................ AATACGGCGTTGTAGTAATTGATCAGATAATA 1985 28 100.0 33 ............................ ATGGAGCAGTCCAGAGTGTTGGCTGCTCAAACA 1924 28 100.0 33 ............................ TAAACCAGACAATGAAAACGGTCGAATTTATAT 1863 28 100.0 32 ............................ ATCACCTCGCGTCACCTCAGTTATCTTATGTT 1803 28 100.0 33 ............................ CGATAAATGCCGCAAAGCTTGTGTAATAGCGGT 1742 28 100.0 32 ............................ TTGACGGAAGCGAGTATCTGAAACACTGGCTG 1682 28 100.0 32 ............................ CTTATCAATCACTCTTTATCGAAAGAATTTAA 1622 28 100.0 32 ............................ TTGACGCCAGGAAATCTTCCCAATGAGGTGCT 1562 28 100.0 32 ............................ TTCTCCATGAAGTCTAAGATCATGGAGGTTAG 1502 28 100.0 32 ............................ TTAACGGCAACGACTGGTAAAGTGCAGGCTAA 1442 28 100.0 32 ............................ TAATGATCTAGTCACAATATGGATTGCTGACA 1382 28 100.0 32 ............................ TTAATCATTTCCGCTTCATCCCAATTTGGGAT 1322 28 100.0 32 ............................ TTTTATTACAACCACAAATTCCGTCTGTACTG 1262 28 100.0 32 ............................ CATGAACGTTCAATAGCTTTAATGGTCGCGTC 1202 28 100.0 32 ............................ TTAGGTTGACGTTTAGTTTTTGGCTTTTCTTC 1142 28 100.0 32 ............................ ATTGTCGCTGCAGGTGCTCAGTCTGGGATCGC 1082 28 100.0 32 ............................ TGGACGCAAAGGAAATTGCCGAGAACTCAGAG 1022 28 100.0 32 ............................ AGAGATTCAAACCCAACAAAATAAACAGCAAA 962 28 100.0 32 ............................ ACACAAACAGCCACTCAAGGTGTCATCAGCTC 902 28 100.0 32 ............................ GACTTGGTGAAACAGGTGAATCACTTTGGTTC 842 28 100.0 32 ............................ CAATGGGTACAAAGGTTCAGTTACCAGAGATT 782 28 100.0 32 ............................ AACTAAAGTTAATCCCAAACCAACCACCACAC 722 28 100.0 32 ............................ GGGAACGCAGGCACAGCCAGTAAGCTGAAAGA 662 28 100.0 32 ............................ GACTCAAGCCTTTCACTGGGTAATACGTAATG 602 28 100.0 32 ............................ TACAAATTCAAACGGCGCATTAAGGGGTGGGA 542 28 100.0 32 ............................ AAAAGTCATTTCTCCTTCGGGTGAAGCCACGT 482 28 100.0 32 ............................ GTATTGACAGCACATCTGTAGCTCAACTGGAA 422 28 100.0 32 ............................ TTGTTGTGATAAAGCATAACAAACACCTTTAT 362 28 100.0 32 ............................ TTTTGGATGAGCTTAGAACTGCAACAATTGTC 302 28 100.0 32 ............................ ATCATTACCCCAAGTTATGTAATTTTCATATT 242 28 100.0 32 ............................ TTTATTTTTAATGCGTAGCGGTGATGGGAACA 182 28 100.0 32 ............................ GCATCGGCCGGGTCTTCGTCTGTTTTTTCCGT 122 28 100.0 33 ............................ TGTTGTATAACCATGCCTATACGCCTGTTATGA 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 147 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : TTAGATATCAGACATTGGCTTGATCGTTTAGAAGATTATGTACATATCACTTCTATTCGTGAAGTACCTAGCGACATTAAAGGCTATGCCATTTACAAGCGTAAGCAAGTGAAAACCAATGCTCAGCGTTTGGCACGACACCGTGTAAAACGTGGTGATATTGGTTTTGATGAAGCATTAGCAAGATATAGCAATGTGGTGACCACAACTAACTTGCCTTATATTGAAATGAAAAGCCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGCACTTATGGATTAAGTTCGGTGTCATCTGTACCAGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAGCTTATGATAGTGGTTTAAAACTTGGGTCTTTTGAGAGATTTAAGAGTTAAATCACTGTTATAACTTTATTTTTTGCTTTAAAATTGCT # Right flank : AATGATGTGTGATTAGCCACTGGAGAGATCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //