Array 1 1448338-1449821 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1448338 29 100.0 37 ............................. AGGTGTGGCTCTGTTTCATTGTCTGCTCATAAGAAAG 1448404 29 100.0 36 ............................. TATATTAACTGGAACATTTCGTTCTATAAACATTAA 1448469 29 100.0 37 ............................. GAAACAAAGAAGGTCGTAATATTGATTTTGCAATAGT 1448535 29 100.0 37 ............................. TTGGTTGATGCAATGTCTAATTTTAAAGACAAGTTTC 1448601 29 100.0 38 ............................. GAATATCTTCCTTATACTTATAGGAGTTGGAATTATAA 1448668 29 100.0 36 ............................. GTATTTTTAACAGAAGATGAGGACTCTGTACATGAA 1448733 29 100.0 38 ............................. ATAAATGCAATGAGACAAAATAAAAAGTTGGAAAAAAC 1448800 29 100.0 36 ............................. TTCTTCTTTTTAGAATTATAAATATCCATGTTAATA 1448865 29 100.0 37 ............................. TGATTTATCAGTTTACTTTAGAAATCGCTCAGATAGT 1448931 29 100.0 38 ............................. AAGACTGGAGTTAAATATACAAAAATGTTTATTGGCGT 1448998 29 100.0 37 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACATCTAATG 1449064 29 100.0 38 ............................. CTCAAACTATACCATTTCCCTTGCCATTTCTTATGATT 1449131 29 100.0 37 ............................. ATAACTCATTCCATGTAACTCTTCCTTTAGACGCTTT 1449197 29 100.0 37 ............................. GAGCTTTTAAAATGCACTGAATACTCATTTATTACAT 1449263 29 100.0 37 ............................. TTGCCTCTAATTCTTTGTCATTTAACTTGCTAAATTT 1449329 29 100.0 39 ............................. TTTGTTGACGCTGAACTAATCGAACATGTTGCTTTGAAA 1449397 29 100.0 37 ............................. ATTATTTCAGTCATTGCAATTTCATTGAACAATTCTA 1449463 29 100.0 37 ............................. GTCTTTTATATCTGTTAGGTTCATCAAAGGCAATTCC 1449529 29 100.0 38 ............................. GAACATAAAGATGAAGTAAATTCAGCTAAGTTAGCAGT 1449596 29 100.0 37 ............................. CATATTTCGTCGCATATATCTGTATGAGGATGTGCCA 1449662 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 1449727 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 1449793 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 98.5 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGGTAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1560066-1560754 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1560066 29 100.0 36 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTA 1560131 29 100.0 36 ............................. ATATATTCATGCTCCACAAACTGGTGACGTAGTAAA 1560196 29 100.0 37 ............................. AATGATAAAGCTGGTCGTATTTCATTTTGGAATGATG 1560262 29 100.0 36 ............................. TACGAATGTTCTATAAATATAGAATTATTTGTCTGT 1560327 29 100.0 38 ............................. CAAGTAATTTAAGATGGGATAATATAGACTTTGATAAT 1560394 29 100.0 37 ............................. GTTACCTGCATCATCTTGTACCTGTCTTGCTCGAGCA 1560460 29 100.0 36 ............................. TGAAATGTGAATTATTTTCAAATGTATGTTTTACTT 1560525 29 100.0 40 ............................. ATCATATTAAAATGATAATTTTAAATACTTATTTATTCTT 1560594 29 100.0 36 ............................. CAAAACAATTAGTAGCACTACTTAAAACAACAGCAC 1560659 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 1560726 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCGCTATTGCTCGTTTACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1794987-1797323 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1794987 29 100.0 36 ............................. ACTCCTGTGCCTGCACTATTAGAATTATAAGTACTT 1795052 29 100.0 36 ............................. CTCTACCATAAATAGATTGTAGTTCTTCTTGCTTTT 1795117 29 100.0 37 ............................. TCAATAGGACCATATCTAATAGAATATTTGCTTTTCA 1795183 29 100.0 37 ............................. AAGTGCAAGAGCTAGTTATGCAGATACAGCAGCACAG 1795249 29 100.0 36 ............................. TTGGACTTAAACCGCTTAAAGAACTAGCAGGTATAA 1795314 29 100.0 37 ............................. TTGTGTAACTTAATATCAATAATAGCGATAGTATTGA 1795380 29 100.0 38 ............................. TGATTTTTCTATAGAATTTGAAAAGAAAATGGATAAAC 1795447 29 100.0 37 ............................. ATGTACAAAAACAAAGCTCCCTGGCTAAATGAAGTGA 1795513 29 100.0 38 ............................. TTTGACAAGGGTGGTATGTAGATGTTAACACCTGATGA 1795580 29 100.0 36 ............................. TTATGACCTAATCGCTAAGAATGTACTTTTTTTAGC 1795645 29 100.0 38 ............................. TAAAACAATTGAATAAATATAATAAGATGCAACACAAA 1795712 29 100.0 37 ............................. TATCTTTCTTGGCTTTTACCAATCAAGTCTATGTCTG 1795778 29 100.0 37 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCAA 1795844 29 100.0 36 ............................. TTTGCATGGTACTAGACACACATATATGCAGTTGGC 1795909 29 100.0 38 ............................. TTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAA 1795976 29 100.0 36 ............................. TAAAACTACGATACCTAATAATACTTCAATTAAAGC 1796041 29 100.0 37 ............................. ATTTTTTATTTAAACTTAGTAACTAAAAATCTATTTA 1796107 29 100.0 37 ............................. GACAAAAAATGAAAGTTACTATGAGGAATATAATATA 1796173 29 100.0 37 ............................. TCTTGCTTACCATGTTTGAAATTTTCAATAATGACCT 1796239 29 100.0 38 ............................. TCAAAAGTACCATCTATTTGTATTTCTATATTTTCATC 1796306 29 100.0 38 ............................. TTAAAAATACTAAATGCAACTGCTCCTAAAACATATAA 1796373 29 100.0 37 ............................. TGGTATTTGCTAATATTGATTAATAGTACTCGAAATT 1796439 29 100.0 37 ............................. TAATAAGCTGTAAAATTTGTGTCGTTATCATCATAGC 1796505 29 100.0 37 ............................. GTTTTAACATATTCCATAAATGCCTGTCTATACTCCA 1796571 29 100.0 39 ............................. TCGCTTCCCGCGCTTTCTGATTCTAAATTTTTATTGCTA 1796639 29 100.0 38 ............................. CGGATTTTAACTGGTTTTATGCAACAATATAACGCTAA 1796706 29 100.0 36 ............................. CTCCTTAACCTACCGCATAAAAACGAAAACTAGAAC 1796771 29 100.0 36 ............................. TATCGAACTGATAGAGCTGTTAAGCCTGGTACTTGG 1796836 29 100.0 35 ............................. TCACTTGGTACTGTACATGGATACGCTGTATTCGA 1796900 29 100.0 37 ............................. CAAGCATTTTCTAATATACTTGTATCAATACATTCCA 1796966 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTG 1797032 29 100.0 36 ............................. TTAGAAATTTTACTTGAAAATATTATACTAAAGGAT 1797097 29 100.0 37 ............................. ACTCGACTGAACATAGAAACAGCTTTTACAACTCCAA 1797163 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 1797229 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 1797295 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAATATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCCTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2114941-2114651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2114940 29 100.0 37 ............................. GAAGCAAAGTTATTTACAAAATGGGTTACAAAAACAC 2114874 29 100.0 36 ............................. CATACCAAGTCCAATATCTGCAATATTAGATTTTAA 2114809 29 100.0 36 ............................. TTCCAATTTATTGTATCTCGTGAGTTAGGTAACAAA 2114744 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 2114679 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAACATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATAAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGATAATGTATATAAAAAATAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2467507-2465837 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2467506 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 2467441 29 100.0 36 ............................. ATACTATCACCTACTCTTGTTTTTGCTTCTCTAAAA 2467376 29 100.0 36 ............................. GAAGATGAAAACGACAAATTAGAATGGGAACAAAAA 2467311 29 100.0 38 ............................. TAGTGACTGGGCTGGTTTTAATGGAGGGGGAAGAGGTC 2467244 29 100.0 37 ............................. AGGTTCTTTAAATAAGGAAAAAAGATAAATATATTTA 2467178 29 100.0 37 ............................. GACTTCCTATAACGTTTATACTCACATTATAAGACGT 2467112 29 100.0 37 ............................. TAGACAAGCAAATTGAAGAAGAACAAAAAGCAGAAGA 2467046 29 100.0 37 ............................. TTAAAAAATCGAGAATTTGAATTAGATGATGTAACTA 2466980 29 100.0 36 ............................. TTAGTTGCTGCTGTGATAGGTACAGTAACAGCAGCA 2466915 29 100.0 37 ............................. CATTGTTCAAATTCAAACTTTCTATGAAGTTATTAAG 2466849 29 100.0 37 ............................. ATTGGAAATGAAAAAAAGTCATTTAAAAATAAATTAA 2466783 29 100.0 36 ............................. TGAGGGGTGCGTAAGTGATATATTTAAGCAATATTC 2466718 29 100.0 37 ............................. GTTTCTAATGCTTTTTGAATTAGATTAGAACCCCATT 2466652 29 100.0 36 ............................. GTTTTGTCTGGTGATAAAGAGGCAATGTCACTAGAG 2466587 29 100.0 36 ............................. AGGAATTACAGGGTAATAAGATAAATATAACGGAGA 2466522 29 100.0 37 ............................. CGTACGGATGTACGACGTAATTAAAATTTAATATAAA 2466456 29 100.0 37 ............................. ACCCCTAACTCTACTGTGTAATGACACACAAACTATC 2466390 29 100.0 37 ............................. TGTAGTTAATATAAAAATTCTTATTACAATATCATTT 2466324 29 100.0 35 ............................. TAACCTTGTATTTGTCTAATACGATACAAAGCAAA 2466260 29 100.0 37 ............................. TGTCTTTAGAAACAAAACTAATACTATTATTACTAGA 2466194 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 2466129 29 100.0 38 ............................. TTTCGACCCGGTATATTTATTTTTTCAATCAAACGTTG 2466062 29 100.0 37 ............................. TACTTTTTGAGTTCATAATTTGCACACTTAACCTCTA 2465996 29 96.6 37 ..........G.................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 2465930 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 2465865 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 3207068-3205385 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZRG01000004.1 Clostridioides difficile strain 20479 u00000crpx_c_020479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 3207067 29 100.0 35 ............................. TTATAATCCAACTAAATTCTTTTAAATAACTACCA 3207003 29 100.0 35 ............................. TTATAATCCAACTAAATTCTTTTAAATAACTACCA 3206939 29 100.0 36 ............................. AAAGAACTACCACTGGGATTATAATAATATACACTT 3206874 29 100.0 37 ............................. TGTTTATTTGTTGCATCACTATCTTTTGTATCATCAA 3206808 29 100.0 37 ............................. AGGTGCTATAGGAAGGTAGTTTTTATGGAATATCAAG 3206742 29 100.0 37 ............................. AGCTTTACAATATCAAAGAAAAATTGAAACATCTATG 3206676 29 100.0 37 ............................. AAGCATTTTGTTAGTTTATTTCAAACTTTAGAGGTCT 3206610 29 100.0 55 ............................. CCAACTAGGTGAAAGAAGTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTA 3206526 29 100.0 36 ............................. AGTTTATCAAGTAAACTTAACATTTGAGCGTTATAC 3206461 29 100.0 34 ............................. GGTCATGTTCTTATCATATTAAAGATGTTCATAA 3206398 29 100.0 37 ............................. TCATTCGTACTGTTAGTGGTAGCTGGTCTAGTAGCTG 3206332 29 100.0 36 ............................. ACAGATAAGTGTAAGGAACTCCCAACAAACCCAATA 3206267 29 100.0 37 ............................. TATTTTTTGAGCTCGTAACCAGCACATTTAACTTCAA 3206201 29 100.0 37 ............................. TAATATATGACTTATAACTTTGATTTTTTGATTTTAC 3206135 29 100.0 37 ............................. ATCGTAATGTCTTCAATCTCAAAATGTTGATTTTCCA 3206069 29 100.0 37 ............................. GTACCCCTTTAACGAAATTAAAATTGAATCTAATAAT 3206003 29 100.0 37 ............................. TCTCAACAACTTCTCTAGTTTTATTATAAATACGAAA 3205937 29 100.0 36 ............................. TACCATACAACTATACAAATAAAACTCTGAAAAGGC 3205872 29 100.0 37 ............................. CCCACAAGGTATTCAAAGAGAAATGAAGTTAGGAACT 3205806 29 100.0 37 ............................. AGATTAAGTCAATCAGAAGTTAAAGAGTGTTTGAAAA 3205740 29 100.0 37 ............................. AGAGCACGGCAAAATATCTTTCGAATACGAAACAATC 3205674 29 100.0 37 ............................. CTATATTCTTTAATGCTAAAGTATTTATAATACTTGT 3205608 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 3205542 29 86.2 36 .........C............GA...G. AGAATATTAACAATATCAACGAGTATTTAGAAACTT 3205477 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 3205413 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================================= ================== 26 29 97.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAATTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : AAAATAAACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAATAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //