Array 1 251408-252900 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAS01000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3269_R1 NODE_1_length_377084_cov_0.997583_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251408 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 251469 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 251530 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 251591 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 251652 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 251713 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 251774 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 251835 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 251896 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 251957 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 252018 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 252079 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 252140 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 252201 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 252262 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 252323 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 252385 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 252446 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 252507 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 252568 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 252629 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 252690 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 252751 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 252812 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 252873 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269032-270935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAS01000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3269_R1 NODE_1_length_377084_cov_0.997583_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 269032 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 269093 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 269154 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 269215 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 269276 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 269337 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 269398 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 269460 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 269521 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 269582 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 269643 29 96.6 32 ..........................A.. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 269704 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 269765 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 269826 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 269887 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 269948 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 270009 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 270070 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 270131 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 270192 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 270254 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 270357 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 270418 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 270479 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 270540 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 270601 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 270662 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 270723 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 270784 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 270845 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 270906 29 96.6 0 A............................ | A [270932] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //