Array 1 15282-14533 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPCH01000015.1 Pseudomonas cichorii strain 136 Contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15281 28 100.0 32 ............................ ATTGTTTGAGAATGACTTTATAGCGCGTGGCT 15221 28 100.0 32 ............................ TCTCAGCAGTACGCCGATCCGGCGCATCCGTG 15161 28 100.0 32 ............................ CGCCGGGCAGCAGCATGTATATAGGGGAGAGG 15101 28 100.0 32 ............................ GTATTGCGCAAACAATCTCATCGACTCAGCAG 15041 28 100.0 32 ............................ TATCCGCCGCCACGCCTTGCCTGCAAGGTGCT 14981 28 100.0 32 ............................ CGGCCCGGCTCCACGTTGGCAATCTGAGCCAT 14921 28 100.0 32 ............................ AGCGCACCTACCAGCCAACCCCGGACGCCTGC 14861 28 100.0 32 ............................ CGGCAACGTAGATAGCACGGCAGGTCGCAGTA 14801 28 100.0 32 ............................ ACATGTACAGCCCGCTGTCCGGTATTGATGAG 14741 28 100.0 32 ............................ GAAACTGGATGTACCGCCGTTCGCGCCGTTTG 14681 28 96.4 32 ............A............... AAGACACGGCGCGCTCTTTGCCGGGGCTTGGT 14621 28 96.4 33 ............A............... ACAAGGCCCGTGCCAGCACCGGCAATCATGCCT 14560 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTACGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAGCACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCACTGAGCGTGTTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGATATGCCCCATGTGGTGATGGAAGTGCCTCCCCAGCCCAGACGAGGAATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGACGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGTCTGCCGGGTTCTGACCCTCTTTTTTCAGCCCCCTCCAGGCCCTTTTAAAATCAATGACTTATAAAAGCCTCGAAAAAAAGGGTAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : ACGAATTGCTCCAGAACCTGAAATTCCCACCCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGCGTAGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGAATAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCCATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAAATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAATGCCATCGAGAACCGGGAAGACATCGCCACCGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25963-25575 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPCH01000015.1 Pseudomonas cichorii strain 136 Contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25962 28 100.0 32 ............................ ATGATGCAGTTCCGTTTCAGTGGGTGTGTGCG 25902 28 100.0 32 ............................ TGAAAATGGCAAACCTCATGCCCAAGCGATCC 25842 28 100.0 32 ............................ GCGAGCTGGGCAACGACGCATATCTTAGCAAG 25782 28 100.0 32 ............................ CGAGAGGAGGACTGATGCAGAGCATCCAGAAC 25722 28 100.0 32 ............................ GTGACCATGCCCAGCCAGGCCATCTTGCTGAT 25662 28 100.0 32 ............................ ATGAGCGCAACGATATCTTTGCGCATGCAGTC 25602 28 78.6 0 ............A.......T...ACTC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTTGAAAAATATGGCCCCCTACAGTCTCCCTCGGCACCAAACAGCAAGACACTCAAGCGGTTGCAGAGCTTGAGGTGAAAAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCTTGGTTTTTGATGATTGCCGGGCCTGTAGGAGCGCGCTTGCCCGCGACGTTCGTACAGGCAATGCATTTTCATTGGCAGGGCGACAGTCGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCTGAGTAGAAGTGAATTCATTCGCGAAGACGGCATTCCAGACAATACACCTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCATTCCTTTAAAATCAACAAGTTACGGAACCCTCAAAAAAGAGGGTAAAACGCCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CACTTCATAACCGTCAAATCCTACATTCCCACTCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCTAAACTGAATCCCCTCATTTAACCCACCCAGCTCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCATCAGCGACCGGGTTTGGCGACCCGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTTCATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGTCTGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //