Array 1 242468-240987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAO01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 21382 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242467 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 242406 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242345 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242284 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242217 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242156 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242095 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242034 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 241973 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 241912 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 241851 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 241790 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 241729 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241668 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241607 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241546 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241443 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241382 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241321 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241260 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241199 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241138 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241077 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241016 29 96.6 0 A............................ | A [240989] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259857-258731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAO01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 21382 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259856 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259795 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259734 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259673 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259612 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259551 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259490 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 259429 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 259368 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259307 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259246 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259185 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259124 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259063 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259002 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258941 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258880 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258819 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258758 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //