Array 1 1743866-1744188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1743866 37 100.0 37 ..................................... TTTGTGGATGGCGTTGTACCCCAGGCCTATGGTCAGG 1743940 37 100.0 34 ..................................... AATCTAATCAAGGTGTTATGGGGAGATACACCGT 1744011 37 100.0 31 ..................................... AAACTAACATGGATATCGTCACATAGTTTAA 1744079 37 100.0 36 ..................................... ATCTTCAGCGGGAATCCGATGTTGTCGCTTCTGGAG 1744152 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 35 ATGGCGATCCCCTACATTAACGGGGCACTGGCCTGAC # Left flank : GGGACTGAAACTTATCACCCCGAACTGAAGCAGCAGCTTCGCAGCCCCCCGCCAGGCATATTCGCAGCATAATTTGCTACAAATATGCCGCCCCTCCGGGGCTTTGTCGGCATCCCCTGAATCTGTTATAATCAGGAAAAGAATTTGTAATCAATACATTTCAATCCTTTCTTATAGCAAATCCCTGTAGCAAAAAATTATCTGCCGTCCCTCCGGGACTGAGATTGCCATCCGACCCCGAACCCCGGCAATGAATTGCCGGGCTATTCTCTGCCGTCCCTCCGGGACTGAGATTGCCATCCGACCCCGAACCCCGGCAATGAATTGCCGGGCTATTCTCTGCCGTCCCTCCGGGACTAAAATTACTGAACCCGTTTCTGAATAAAAAAAACCCGGCAATGAATTGCCGGGCTTTTTTTTAATTGTCCGTCCGGGACTGAATTTACCATCCGAACCGAAGTCTGACAATTATCAATTATCAATTGTCAATTATCAATTGG # Right flank : CCCCCTCCCTTTGTCCGGGTGTCGCCGGTCTTTCTCGTGCAAGCCTCTGATAATAATAAGAAAAAATAGTAAGGTATTTTCATTTTCATAATTTTTGAATTTTGGCAAATTTGAGGCGAAAAGTTTGTAACAAACTGATATAAAACAAAATAAACTAACTTTTTGCACCCCAAAACTGCTAAAATCATAAGATAAAACATAAAAATCAGCAGTTTCCGAACCTGCGAAGCATCGAAAAAAGCCCCTGATTTTCACGTTTTTGAAAATTTTTTTTCACAAAAAAAGCAATTTTAAGGAAAAACCTCATAACTATTATTATAAGAAAAAATATCACCACCATTGTTATTATTATGATTGGAAAAGTCCATAACACAGGTTTTTTTCAGATATGACCTCTGATTCCGGTCGAATAAGCAAAAAATGTGATATAGCCCCTGAAAACACTTGTTTTTCAATTAATTTCTCATAATTTTCAATTAGTCAGTGTGGCCCGCTCCCCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGATCCCCTACATTAACGGGGCACTGGCCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 3263220-3261149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3263219 37 100.0 31 ..................................... GCTCCGTTAACGTTCAAACCCTGCTGGCCCT 3263151 37 100.0 33 ..................................... TCGCCAGCAAAAGTGGTTTTAAATTCCACCTTA 3263081 37 100.0 30 ..................................... CTACTTAAAATTCAAGCAGGTAAAAATTAA 3263014 37 100.0 32 ..................................... CACGACATCGGATGCCCGCTGAAGATCTCCGG 3262945 37 100.0 31 ..................................... CAAAAACTGCTGCAGTAAAAAGTTTGTAATT 3262877 37 100.0 35 ..................................... GCCACAGCAATCGTGCCATTGTCCTGGACGCCATA 3262805 37 100.0 34 ..................................... GACTGAAAAATGACTTCATCTAAATCATCTGGAG 3262734 37 100.0 32 ..................................... TCGTAAAAAGCGGCGAGGTCAAGGTCTGTTTT 3262665 37 100.0 32 ..................................... GTTAATGGCTGCACCACCATCGCCAGCTACAT 3262596 37 100.0 36 ..................................... AGCACCAGTCATGGCTGTCATAGACGTCTCTGCATT 3262523 37 100.0 35 ..................................... CAGATCAGGTTTGGCGTTATGCCAATGAAAGGCGT 3262451 37 100.0 35 ..................................... GTTCTTTAAGACCCGCGTAGGCTTCTTTTAGTACA 3262379 37 100.0 34 ..................................... GTTTCAACAATAAAGGCAATATGTAATCGCCTTA 3262308 37 100.0 33 ..................................... GTCAAATTGTCGGCCGTTTTAGCACCTGAGACT 3262238 37 100.0 30 ..................................... AACTGGTGTAACCAGCTCCATTGATGTTAA 3262171 37 100.0 33 ..................................... CTGTCAAAACGCTCCCTCCTGTGGGTCCTCCAA 3262101 37 100.0 34 ..................................... TTTGAGTCCGGTCCCCTATGGACCTGACTCCGGA 3262030 37 100.0 35 ..................................... GAACTCCACCCGGCCGGACCAAGCTTGGTCAGCCG 3261958 37 100.0 31 ..................................... TCCGTCATCATTGATGTCACCTGGGAAAAAA 3261890 37 100.0 36 ..................................... GAAAAATCTGCATTTTCCAAGGCAACTTCCAAGTTG 3261817 37 100.0 36 ..................................... CTCGGCTTTTGGAGCAAATCCCCAGCCATCGATGGT 3261744 37 100.0 30 ..................................... AAGGAAGAAATTTCTTCTTCTCCCAGATTA 3261677 37 100.0 32 ..................................... CTACATTATCATCTGTTACACTATCAAAGAAA 3261608 37 100.0 32 ..................................... TCGTAAAAAGCGGCGAGGTCAAGGTCTGTTTT 3261539 37 100.0 35 ..................................... TGCAGAAGGAAAAATGACAGTTTCTTCATCTTTTT 3261467 37 100.0 32 ..................................... CGGTCATACGACCGTTGTTGACGAAATCATTC 3261398 37 100.0 34 ..................................... TTCAAACTCTTTTCCATAAGGAGTTACTTCATAA 3261327 37 100.0 33 ..................................... AAAAATTACTATTGCCATTTTTCTCATTTTTAC 3261257 37 100.0 35 ..................................... ATAAGCCTTTGATGTTAAAGGCTTTGTGTTTTGAT 3261185 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 30 37 100.0 33 GTCAGGACAGACACCCGGAACCTTTATGTGATGGAAC # Left flank : AGGACTACCGTTTTTTATATCTTTTTTCTGCGAACGGCGGGGAAACCCGGGTTTTTCCTTCACGGGCGGCGGATCATTCCGGGAAAAAAGCCGGGTTTCTTTCCGGGCAAATATAAAAAACTTTTGCTCAGGTACTTAACAGGCAGGAAAATAGTTTGACAATCGCAAAATAAAAAGTTAGGTCTGGAAAAAATCCGGGTGTCAGTTTTGCCGGCAATCTGATTGTCAGAAAAAAAAATTTCATTTTCTGAAAGGTGAAATTTGTAACTATCTTATTTTTAACGATATGTTAATTCCGGGTGCCTTTTTTCGAAAAAAGTTAGTTTATTTTGTATTAAAACAATATGTTGGCAGGTTTTTAGCAGTAAACCGGGTGAAAAGCCAAAATGACACTTACGAGCCTTAACAACGAAAATGGCGGTCATTATCTCTCTGATAATAAAACGAATTTAACGAAAGTTCAAAATCAGAAAAGCCATTTTTTGAAATTTTCGAGGGGG # Right flank : GCCTTCAATTGATAATTGATAATGTCAGGATCGGATCTGCCGGACGGGGTTTGCAACCCCGTCCGAAATATTTTCCGACCCCCGAAAACAAACGTTTCGGACGGGGTTGCAAACTTTGTCCGAAAAATCATTAGCCAATAAACGCTCATAAAAAAGCCGGGTTTTTTGCCCCCGGTTATGAAAATGTTTTCAGATAAAAAACCCGGCTTTTCAAAATGTATTTTCACGGTAAAAGAAATAATGAGTTGTGGTCTTAGCACATGATACTGAGATCAGGACGCAAAGCGTCTGTCCTGCATTCCCACGCAAAGCGTGGGAACGAGAAAAAAACAGAAATTGGATAAATTCAAATTGTTATAGATTTCAAGAAAAAGACTAGTGAAAATATTTATTGCAAATGACAATGTTATGGTGATAGAAGAGCCGAATATAAATTGAGGCAGGCGATTTCAGAACCAATTGCGCGTTTTATCAAAACAGGCAAATTCAATGCAAAGGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGACAGACACCCGGAACCTTTATGTGATGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 3329672-3336487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 3329672 28 100.0 37 ............................ CGGAAGCTGTGGCGAGGATCGGAGCGGACAAGGCTTT 3329737 28 100.0 38 ............................ ATACAAGGATCGTACAGTTACTTTTACAGAATCTGCTG 3329803 28 100.0 37 ............................ CAACATTTTCAGCATAAAAAGTTCTGCCATTTTCACA 3329868 28 100.0 38 ............................ ATTTCATGTCCCTGAAAAAAATCTTCACCGTATTTTAA 3329934 28 100.0 36 ............................ CCGGAAAAACTGAAAGCTGGTCTCCGGACAAATCAA 3329998 28 100.0 37 ............................ GCCGAGCGTTATCCGGTCGTCAGTGAGATGCCCGAGG 3330063 28 100.0 36 ............................ TTTTTGCTTCAAACCCTGATTCTGAAACATAGACTC 3330127 28 100.0 35 ............................ TTCCGGCGATGTAAAGTTTATCTCAATCGTCCTAT 3330190 28 100.0 38 ............................ AGCCGCCGGTCGGATTTCAGAGCCGGGTTAGGTTTCTT 3330256 28 100.0 38 ............................ TTGCTGGACATGGGATGCTGACTGATAACTTGCAGCTT 3330322 28 100.0 37 ............................ GCAAAAACAGTGCTTTTATCCCTATCAGCATGTTCCT 3330387 28 100.0 37 ............................ CGAAAATGTTCCGCCAGATCGTTTTATTTCAGCTTTA 3330452 28 100.0 37 ............................ AAACTTTTGAAGGAGGTTTTAATGCAAACTTTGACTG 3330517 28 100.0 35 ............................ AAGAAAAAAATCCGACTGTGAGTCATCTCCGGCAA 3330580 28 100.0 40 ............................ CTGAGTTCAGGATTAAATCTTGCCTCATGTCTTTCCGGGA 3330648 28 100.0 35 ............................ AACCTCCTTTTTCGGATCGTCAAAGTCTAATTCAA 3330711 28 100.0 35 ............................ GGGGTGTATGGTAGCACTGCGGCTGAGCGACTGCG 3330774 28 100.0 37 ............................ TGATCCGTCCGTGACAAAACCAAGCCCCTCAATTGCT 3330839 28 100.0 37 ............................ TGTCTGATGATCATTTCTCCCCTCCCATGTCATGTTT 3330904 28 100.0 36 ............................ GTACGGGACAACCCGCATAACCTGACAGGCAAAGAC 3330968 28 100.0 37 ............................ TTCGGACTTGTAAGAGTCTTATTCGTGAGGGTCTGAG 3331033 28 100.0 37 ............................ GTCTGTAATGTCAGATCAGCAAATTCGGGATTCGTTT 3331098 28 100.0 37 ............................ GTGAACATCCTGCACACATCACAAACACCAAAAACAA 3331163 28 100.0 38 ............................ AAGCTGGCTTATTCCGGTATTTGAGGAGCATGTGGATG 3331229 28 100.0 36 ............................ AGCGAATGGGAGGACAGAGAAGGTAGAAACCGTTTT 3331293 28 100.0 36 ............................ TGAGAAAAAAACTTGTCTGCCGTCTTTTTCTTTAAA 3331357 28 100.0 36 ............................ ATAATCGGTCTTGTCACCGTCCCTGTTTCCAGTCTG 3331421 28 100.0 37 ............................ TTCTATAATCCACGTCGCCGTCTATGCTTGTAATTGT 3331486 28 100.0 38 ............................ TGAAAGACTGAATGCCGCCAGTCGTTTTTTGTATTTTT 3331552 28 100.0 36 ............................ GTTTCGGATGTACGGCGGGAACATTTATGGCGAAGG 3331616 28 100.0 36 ............................ CAGAAATCGAAAGCGTGGGTAGGAAGATCAGGTTAT 3331680 28 100.0 38 ............................ ATAGGGTTTTAAGCGGGTACTTCAGGACATCTTACTTA 3331746 28 100.0 35 ............................ TCGTTAAAAGATCGAGCGTTCGCTGTTCTAACCTG 3331809 28 100.0 37 ............................ TTGCATTTAATCCTGTGATGGTTGTATTGCTTTCGGT 3331874 28 100.0 35 ............................ TGTTTATCAAATCGCAAATCCGATTTCTTTACCGG 3331937 28 100.0 36 ............................ AGTTTTTATTTGTTTCCGGAAGATCGCTGTCGTCGT 3332001 28 100.0 35 ............................ AGTTTGCGATATCCTTGTAATCATCACTCCCATAT 3332064 28 100.0 36 ............................ ACACAGGAGAGGCATATGCCCGCCATATTTCATGTG 3332128 28 100.0 36 ............................ CCTCAGAAACGATTATCATTTCTCCTTCGTCGCTGC 3332192 28 100.0 37 ............................ TGACCTGTCCCTGACCGGTTCTCACATGATCATCACA 3332257 28 100.0 37 ............................ TTATAATAAATTCGGTTGAGGCTCTGACCGAGTTTAG 3332322 28 100.0 36 ............................ CTGAAAATGTCGCTACACTATTAAAAAGAACAGCGT 3332386 28 100.0 37 ............................ AAATTCGTTCCACCAAGCCTCAATGAAGGGTGCAATA 3332451 28 100.0 35 ............................ TCTGACACCCCCTCTTATATCCTCTGCCCGGCGCA 3332514 28 100.0 37 ............................ TTGGGATGATCATGGCAGCTGCTGCATTTATGTCGCC 3332579 28 100.0 37 ............................ TCTGGCCCCGTATGTCGACAGTCGACACACGCTGCCA 3332644 28 100.0 36 ............................ TTTTGCTGAAACGCCTTTGACAAGCTCATATTTAGA 3332708 28 100.0 39 ............................ CTCCTGGGGCTCGTACACTTCCCAACAATCCGTATACCC 3332775 28 100.0 35 ............................ GACTACCCCCTAATCACAAACCGAAGTGCTGTGAC 3332838 28 100.0 35 ............................ TTAGAGGACTCTCCTCAAAGTTCGGAGGCGAACCG 3332901 28 100.0 37 ............................ TGATTTACAGCTTGCATGTTTAATTCGTGCTGACGCT 3332966 28 100.0 37 ............................ CTGAATCCTCAGCCTGTATATCCCGCCTGATTGCAGC 3333031 28 100.0 37 ............................ TTGATAGTCGGTATCTTCATATAAACCTTCCTATCCC 3333096 28 100.0 36 ............................ TTTTGAATTTTTAATGAATTCAATCTGATAGGATAG 3333160 28 100.0 37 ............................ AAGTCCCGCAACTGATTTGGCTCTGTGACTTTTAACC 3333225 28 100.0 39 ............................ ATACCAGGCTGCCAGCCAGCACAACCCCCGCTCCCACAT 3333292 28 100.0 36 ............................ ACATCGCCAGGTGTAAGTTTCTATGTAAGTTTCTGA 3333356 28 100.0 37 ............................ ATTTACTGTATTTTCGGGCCGCCCTAAAGCTCAAGTT 3333421 28 100.0 36 ............................ CTCCATTAAAAGCCCATGATCCGCATCGAGAAACGC 3333485 28 100.0 37 ............................ CGCAAAAATGGCCAGGGTCACACGCATCATACACGCC 3333550 28 100.0 36 ............................ GAGATAAACTTCCTTTTCCTGGCAAGTCGACTTGTC 3333614 28 100.0 36 ............................ ATGCCCACATGACTCCGTACCGAAAAAAATGGTTCC 3333678 28 100.0 37 ............................ CTGATTGAAACACAGGGAATTTTTCAGTCTGAGCCGA 3333743 28 100.0 37 ............................ TGAAAGGATTGTCAAATTGTAATCGTTCGTAACATTT 3333808 28 100.0 37 ............................ TTTCAGGGACTTCCTGATAACCATAAATCAAGTTTTG 3333873 28 100.0 37 ............................ AGGGAAGGCTCATGCTTGCTATGTCTTCTTATTCAAT 3333938 28 100.0 37 ............................ TGTCAGGCGAGAAAAGGCCAAAGTGATAGTTGATAAA 3334003 28 100.0 37 ............................ TTTTCGGCAATCTTAATCCACTGGAGTTGGACAATGC 3334068 28 100.0 38 ............................ TTATGACAAGAATCTTATTGATCTTATGCGAGATACGA 3334134 28 100.0 37 ............................ TGTCAGGCGAGAAAAGGCCAAAGTGATAGTTGATAAA 3334199 28 100.0 38 ............................ TCCCTCCGGGGAGTGCTAATAGGCTTAGCAAGAGCCTT 3334265 28 100.0 39 ............................ GTATTTTGCTAATCGTAGAAATGCTGTTTTCACCCCATC 3334332 28 100.0 39 ............................ TCTGAGAACTGATTTGCAATCTACTCAGGATATTTTTAA 3334399 28 100.0 36 ............................ TGCTTCAGACGGCAAGGTAACAATGACTGATATTAT 3334463 28 100.0 37 ............................ GATTGCATATGCAGCCATACGTCGAGAATATCCTGAC 3334528 28 100.0 35 ............................ AAGCTGGTTAGTTCCGGTATTTGAGGAGCATGTGG 3334591 28 100.0 38 ............................ ATACATGCCTCCAGGCCCGCCAGCCCACGGGTCATTAA 3334657 28 100.0 36 ............................ GTGAAAACACCTCAAATTATGGAACGCCAATTTGAC 3334721 28 100.0 36 ............................ GGAACTGCCCCGGCTTTTGCTGGATGGTCTTTTGTT 3334785 28 100.0 39 ............................ AATATTCGGCGGCATCATCAAGCGTTTCATGGTCAGCTT 3334852 28 100.0 35 ............................ ATTTCATATCCCTGAAAGAATTCTTCGCCATATTT 3334915 28 100.0 35 ............................ AAGGGAGAAGAAGATGGCTATGACTGGCAGAAACA 3334978 28 100.0 37 ............................ TGAAACGCATATCTGATTACGGAATTGAAAATTATGT 3335043 28 100.0 36 ............................ GTCATGGCAAAATTGAGCGATATGATTGTTTCAAAT 3335107 28 100.0 37 ............................ GGCTTAATAGTGACGCTGACTCTTTTTTTCGGTCTGT 3335172 28 100.0 37 ............................ GCCTCGCAGCCATGCCTGATCCCTGGTGTCAGGCCCA 3335237 28 100.0 35 ............................ ACGGATGCTGGCCTTTCGTCGACAACAACAACTTT 3335300 28 100.0 37 ............................ TTGGCTTACACATGGCAATCACAAACCTGACGCCCGG 3335365 28 100.0 35 ............................ GCCTGAACTCAGGCATCGCCCAAAATCCCTGCGTA 3335428 28 100.0 38 ............................ GCATCTCTCTTAGAGTCCGTCCTGTAGTCAAATCTGTC 3335494 28 100.0 36 ............................ TTGGCACTCACTGCGGCAGGCTTGGCCATCCCTGTG 3335558 28 100.0 37 ............................ AGCTTGTTTTCAGCGGAACATGCCACGACTGCAAAAA 3335623 28 100.0 36 ............................ CTTGAACCGCTTTCTCACGGCGGAGATGTCAAGGCC 3335687 28 100.0 37 ............................ ACGATGATATGTCTCAAATGCTTTTTCCGCCGGATAT 3335752 28 100.0 36 ............................ TCAGGGCATACACTCCATACCTGGTGAAGTGCTTTT 3335816 28 100.0 36 ............................ GGTTTTGAAGATTTGTTACTGCCTGCGGGCCGTCCT 3335880 28 100.0 36 ............................ GGAGAGCAGCGGCCAGAGAACAGGCACGGGAAGAAG 3335944 28 100.0 35 ............................ ATGCCGGGACAAATCACGCTGCCGGGGAATTACTT 3336007 28 100.0 36 ............................ CGGTAGAGGGGGTCGGGTCGGTTTACGGGATGCAGA 3336071 28 100.0 38 ............................ GTGTCGTTGTGCAGTATCCGTCATCTCTCCGGTACTGC 3336137 28 100.0 37 ............................ GACCGTGGCCGGTGCGACCGGAGCAAACGGAGTCACG 3336202 28 100.0 37 ............................ TGTTATCGGAAGCGTCCCTCCTGTAACAATGAGGGTA 3336267 28 100.0 36 ............................ TCTGAGAACTGATTTGCAATCTACTCAGGATATTTT 3336331 28 100.0 37 ............................ CTAATTACCCTGTCGAGAATGTCAGGAACGGCCCGTC 3336396 28 100.0 36 ............................ ATTCATACGGAGGTGCGCTAATATCGTTACCGTATT 3336460 28 92.9 0 .........................T.C | ========== ====== ====== ====== ============================ ======================================== ================== 106 28 99.9 37 GTTATTTCTCCCCATGAGGGGTTATGAG # Left flank : CGGGAAGCTTTGAAGATTGAGCGTCATATTCTTGGTGTTGCGGAATATGAATCTTACAAAAGAAAGGCTTGACAATGTATGTGTTAATGACATATGATGTACGGGCAAAACGCACGGAGAAGTTCAAAAAGCTGCTTCGGAAATATCTTGAACATATCCAATATTCTGTTTTTAGCGGTGATTTGTCAGAGGCGAATTTGATTCACCTGCGCCGGGCAGTCAGCCGCATGCTCCTTCCCGGAGAGCGTGTCACAGAGGTTACGGCAGCGAATCGGAAAAATGTGCATGTTACTCATTTTGTAAAAAATGAAACCGGGAAGGGGGAAGCAAAGCGTGTTGAAGATAATTCACATGCCACGGATTACAGGGTTTTATGATTTGAACTTCGATCCTGGATGAAGCATAAAACACAGGAGAATGAAGTTTTTGCCTAAAGGCTTGATTGCTCTTTTGATGGTATTTTATAATCAAAAAAGGCATGATTGCCTTTAAAATCGGCG # Right flank : CTATCCGACCAAATAAGTTTTGAGGGGTGAAATGTGGTTAGTCCTGCAAAGATAGTGATGAATCCCGTTCACTCCCCCGATTATCGGGACACTGAATCTCATTCATCACTGCTTGTGCAGGACTACCAAATTTTTCTGATTATAATGCCTTTTGGGGGAGCCTGACAGACTGTCCCGAATCTTTATCTTGCAAAATTTTATGTCAGAGCTTCCGGAATCCGGCCAGGGCAAAAGAACAGAATATTTCGGATTCAGTGGGACAATCCCCCTGAAACGGGCCGGGATTTGCCTCTTATACATTTTAATTTCAAAAACTTATATCCTTTCTAAAAGGCGTTGTAATCAGAAAAAATGGCTGGAAAATGCGTCAAAGGTGTAACAGCTTTTACCGTCGAAGCCATTATTCCCAAACACATAACAAGTGTTCCTGTTCCCTTTTTACGAGGCCACTCTGTGTCATACCCAACCCCCGAACCGCATCTGAAAAACATCCAAAACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTTCTCCCCATGAGGGGTTATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 4196532-4198158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4196532 36 100.0 34 .................................... TAACCGCCGTACGTTGCTTTGCAGAAACATACAG 4196602 36 100.0 35 .................................... CGAGAAAAAATGGCATCGGCAAGATTAATAAATTT 4196673 36 100.0 34 .................................... CTGCCTGCAACTTCAATTCCACATCCCCCCCCGT 4196743 36 100.0 35 .................................... CACCATCCTCTGTCATAAGCCTCTTTTTCTTTATC 4196814 36 100.0 32 .................................... CCAACAATAACCCCTTTGACTATATTAGTCAT 4196882 36 100.0 32 .................................... TCTACTCTTTCTTCGTGAATAAGACCTTCATA 4196950 36 100.0 33 .................................... TGCTTCTGCATAGCCTGTGCCATAATTGTCATA 4197019 36 100.0 33 .................................... GGATTTTCGCGCGACCATTCGCTGTCCTCATTT 4197088 36 100.0 31 .................................... TAAAATTATGACCTGAAAATCCTTTCCCGCA 4197155 36 100.0 35 .................................... CATATTTTCGATGCTGAAAAATCATATTTTCCCAA 4197226 36 100.0 34 .................................... TCCTAATTACCTCTTTGCCAAAGGGGGTTTCGGG 4197296 36 100.0 30 .................................... TCCAAAATATCATGAAAATTATCAAAATTT 4197362 36 100.0 36 .................................... CCCGATTTCCGCGTCCGTCATCATAAACGACTTTGT 4197434 36 100.0 34 .................................... TTGTTCCCAGAGGTCGGAGGCTAGGTCAGGATCA 4197504 36 100.0 35 .................................... ACGGCACCAGAACCAGTCTCCACGGTCTCAGTCGC 4197575 36 100.0 34 .................................... ATCTTTCTTGGTTGTCTTCCCTTGAGCCAAAATG 4197645 36 100.0 33 .................................... TCTGGTTCTGGTTCTGGTTCTGGGATTTTCTTA 4197714 36 100.0 32 .................................... TGTTAAGATCCCCATCTTGTGCTTTCAACCGT 4197782 36 100.0 35 .................................... GACCATTCCCTGCTGGGCTTTCCATCGCCCTTCGG 4197853 36 100.0 31 .................................... CTCGCTTTCCAGGTATCCAGTCTTTGGAGCT 4197920 36 100.0 35 .................................... TATAACTATATCTGCACTATTTATATTGTATATAG 4197991 36 100.0 29 .................................... ATGCAAATGATGACTCTTCTCCGGCTTTA 4198056 36 100.0 31 .................................... TCTTCTTCTTAACCTTAGGTTCAACGGCTTT 4198123 36 97.2 0 ..................C................. | ========== ====== ====== ====== ==================================== ==================================== ================== 24 36 99.9 33 GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Left flank : TGAGAATTGATAATTGATCCGGAATGCAGAAATGAGGCGGAGCGAAGCGGAATTTTTGCATCCTTTGATAATTCTCAATTCTCAATTACTAATGCGGTCTGAAAAAAATTGTTTGACCTGAGCAGCCCATATGTTTTATATGTTCTGAATATTTCATATTGGTGTCCCGGTATTAAAAATATGTAAATTTCGAAATACTAAAAAAAGATGTTTTACTGGGTAAAAATCTGTAAAAAAAATTTCGAAAAAATCAATTTTAAAGAGATATATCTTGTATCCAACATCTAACTATTTGAAATAATTATATAAAAATTTTTCAGAAAAAAATAACCGAAAAAAGTTAGTTTATTTTCTTTGATATCAGGATGTTAAATCAGATTTTCCCGATATCGTTCCGACATAAAAAATCGAAGACAAAAGGAGGTTTTTAAGTGGATTTATTCTTTATTATCAAGAAATTAAAAATTTTTAAAGACGTAAATCACGTCTCGTGGGAGGGG # Right flank : CCAAACTCCGGGTTCGGTTTTTTCGATCTGCCGGACGGGGTTTGCAACCCCGTCCGAAATATTTTCCGACCCCCGAAAACAAACGTTTCGGACGGGGTTGCAAACCCCGTCCGGCAGTCTTATAGATCGGCTTCCCGCGGCACCGGATTACGGGCTGCCTGCCGGGATAAGGGATAGGGCTTTCCGGATCGGAAACACCCTTCGGGGAACCGCTGTCATATCGGCCGGTACTATCCGTTTCATCCCCTGAATCCGTTGTCATATTGCCGGCCTCCCCTAACTCCGTTATAATCAGAAAATTGGAGAATTGATAATTGATCCGGAATGCAGAAATGAGGCGGAGCGAAGCGGAATTTTTGCATCCTTTGATAATTCTCAATTCTCAATTACTAATGCGGTCTGAAAAAAATTGTTTGACCTGAGCAGCCCATATGTTTTATATGTTCTGAATATTTCATATTGGTGTCCCGGTATTAAAAATATGTAAATTTCGAAATACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 5 4198959-4200035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 4198959 36 100.0 34 .................................... CTAAATACCAGAAACCCAACCACCATCCTTTATC 4199029 36 100.0 34 .................................... TTAGCAATCTTAAATGCATCGCTAAAAGTACTTC 4199099 36 100.0 35 .................................... CGAAGGTCTCCTCCGATTGCGGAGTCAACTTCGAT 4199170 36 100.0 34 .................................... CCAAAACCCCGACCACCATCCTTTATTGTAAGCT 4199240 36 100.0 34 .................................... TCATCGGGATCGACGAAGTGGACAGTGGCATATG 4199310 36 100.0 33 .................................... CAAAGTTACCTCTCCAATGTTGTGCTGGTTTTT 4199379 36 100.0 33 .................................... TATTTTTTTAAAAGTTGAAGTGCCTTCTTAAGG 4199448 36 100.0 31 .................................... AAACAAGGGTACCGCCAAAATTAATAGACAG 4199515 36 100.0 34 .................................... CTACTCCAATTTTTCCGTCTCCACTCACATCTGC 4199585 36 100.0 32 .................................... AAGTTGAAGTGCCTTCTTAAGACACTTCAAGG 4199653 36 100.0 35 .................................... ACATATTGAATTTTGATACTGTCCCTCTCTTCCAG 4199724 36 100.0 34 .................................... TGTCTCCATACACTTTTCATCAAAAATTATGAAA 4199794 36 100.0 35 .................................... ACATATTGAATTTTGATACTGTCCCTCTCTTCCAG 4199865 36 100.0 30 .................................... CCCATCCGCCGCAAGCTCAACGCCCGAAAT 4199931 36 100.0 33 .................................... AATAAAAATCAATTCCTCCTGCCCGAATCTTCG 4200000 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 16 36 100.0 33 GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Left flank : GGAGAATTGATAATTGATCCGGAATGCAGAAATGAGGCGGAGCGAAGCGGAATTTTTGCATCCTTTGATAATTCTCAATTCTCAATTACTAATGCGGTCTGAAAAAAATTGTTTGACCTGAGCAGCCCATATGTTTTATATGTTCTGAATATTTCATATTGGTGTCCCGGTATTAAAAATATGTAAATTTCGAAATACTAAAAAAAGATGTTTTACTGGGTAAAAATCTGTAAAAAAAATTTCGAAAAAATCAATTTTAAAGAGATATATCTTGTATCCAACATCTAACTATTTGAAATAATTATATGAAAATTTTTCAGAAAAAAATAACCGAAAAAAGTTAGTTTATTTTCTTTGATATCAGGATGTTAAATCAGATTTTCCCGATATCGTTCCGACATAAAAAATCGAAGACAAAAGGAGGTTTTTAAGTGGATTTATTCTTTATTATCAAGAAATTAAAAATTTTTAAAGACGTAAATCACGTCTCGTGGGAGGGG # Right flank : CAGCATAAACTGCCTCTGAAAGCCGATCTGCCGGACGGGGTTTGCAACCCCGTCCGAAATATTTTCCGACCCCCGAAAACAAACGTTTCGGACGGGGTTGCAAACCCCGTCCGGCAGTCTTATAGATCGGCTTCCCGCGGCACCGGATTACGGGCTGCCTGCCGGGATAAGGGATAGGGCTTTCCGGATCGGAAACACCCTTCGGGGAACCGCTGTCATATCGGCCGGTACTATCCGTTTCATCCCCTGAATCCGTTGTCATATTGCCGGCCTCCCCTAAATCCGTTATAATCAGAAAATTGAGAATTGATAATTGATCCGGAATGCAGAAATGAGGCGGAGCGAAGCGGAATTTTTGCATCCTTTGATAATTCTCAATTCTCAATTACTAATGCGGTCTGAAAAAAATTGTTTGACCTGAGCAGCCCATATGTTTTATATGTTCTGAATATTTCATATTGGTGTCCCGGTATTAAAAATATGTAAATTTCGAAATACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 6 4200835-4202317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 4200835 36 100.0 31 .................................... TGCCTCTTTGCACTCGTCTTGAACCTCAAGG 4200902 36 100.0 32 .................................... CCGTGTATGTGAATATTCACAATCTATTAATT 4200970 36 100.0 30 .................................... AGAATTTTCATCGACAACGGTTTTATTTGT 4201036 36 100.0 30 .................................... CCATAAAGAGGGTTAAAATCCATACTCATG 4201102 36 100.0 35 .................................... ACGTTGTCATTGAGTGAAGCTTTTCGGTCTTCACT 4201173 36 100.0 33 .................................... AACGACAGGCATCCCAGATGCTCCTCTGAGACC 4201242 36 100.0 37 .................................... TTTTCCCCCAAATTTGGCAAGCAAGCTCGCTACAGAG 4201315 36 100.0 35 .................................... GTCGCGCCTGCTTCCCGCAAACCAGTCAAGTGGCT 4201386 36 100.0 35 .................................... AGATAACGGGTCGTCTATGTTCCGCATCTTTTTCT 4201457 36 100.0 34 .................................... ATCCTACTTTCCCGCCAACAAGATTTTCATCCTT 4201527 36 100.0 33 .................................... TCACTTCATCACCAGCTGAAAAACCTTGATAGA 4201596 36 100.0 34 .................................... TTATTATCTTTCCAGGCTTCTAGTACGTTTTCTT 4201666 36 100.0 37 .................................... CCCTCAGAAATGCCGTCGACAGAAACATCAGCTACCG 4201739 36 100.0 31 .................................... CCAGTTCCGGTTCCAGCCACAACACCAAAAC 4201806 36 100.0 32 .................................... TCAATTTCTACATTTTTTCCGTCAGGTACGGG 4201874 36 100.0 31 .................................... TCTACCAAGACATCAGAAATTTTATAACCAG 4201941 36 100.0 33 .................................... CTTTCACCTCTATTATATTCAACATATCCCTCT 4202010 36 100.0 32 .................................... AAAGCCCCTTCCCGTCTTCGAATCCCATTCTT 4202078 36 100.0 32 .................................... CGATTAATACCCCCCTGTTCAGTAAACTGGGG 4202146 36 100.0 32 .................................... TCCACCACCATCATCATCCACATTCGGGTCAC 4202214 36 100.0 32 .................................... CTCCGATTGCGGAGTCAACTTCGATCATCCAT 4202282 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 22 36 100.0 33 GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Left flank : TGAGAATTGATAATTGATCCGGAATGCAGAAATGAGGCGGAGCGAAGCGGAATTTTTGCATCCTTTGATAATTCTCAATTCTCAATTACTAATGCGGTCTGAAAAAAATTGTTTGACCTGAGCAGCCCATATGTTTTATATGTTCTGAATATTTCATATTGGTGTCCCGGTATTAAAAATATGTAAATTTCGAAATACTAAAAAAAGATGTTTTACTGGGTAAAAATCTGTAAAAAAAATTTCGAAAAAATCAATTTTAAAGAGATATATCTTGTATCCAACATCTAACTATTTGAAATAATTATATAAAAATTTTTCAGAAAAAAATAACCGAAAAAAGTTAGTTTATTTTCTTTGATATCAGGATGTTAAATCAGATTTTCCCGATATCGTTCCGACATAAAAAATCGAAGACAAAAGGAGGTTTTTAAGTGGATTTATTCTTTATTATCAAGAAATTAAAAATTTTTAAAGACGTAAATCACGTCTCGTGGGAGGGG # Right flank : CTGAAACACTTCCCTCTTTAAAAGAGAAAAAAAAGTTGACCAAAGACCCGGAAATGAGGTTTCTCGGATATTATATCCGAGAGAGGGATGAGAGATTATTCTCTTAAACTCAGCGTCGGGACGCCGACATGCAGGATGTTATAGGATTTGTCTCTCCGGAAGGGGGGAAGGAGGGAACTCCGGAGGGAAATTCGGAGGGAAAGTGAAAAAAATGGCGGAAAAAGAAAACACCTCTCCTGTGCATCCCGTTTTCGAGGATCGGAGAGATTCAGCGGGATTCCGTGAGACCGGCATTTTTTTTCGCAGTTTAATTCTGATTGTAACGAATTTAGGGGAGGCTGTTAAAGCCCCGTGGGGGCGATATATTTGTAGCATTCATCATGCCGGGCCGACCACAAGCCCTTACGGGGCCTGGCAGGGGGGGCGGCAAATCTGTTGCTACAAATATGCCGCCCTTACAGGGCTTGGTCGGTTCTCCCCTAAATCCGTTATAATCAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACCAAAGACCCGGAAATGGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 7 5173068-5175167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================ ================== 5173068 37 100.0 35 ..................................... CTCTCCGGATAATTCTATCTCTTCTGTCCGATAGA 5173140 37 100.0 33 ..................................... TCTTTTATGAAGACATAATCTCCTCTATTCCAA 5173210 37 100.0 35 ..................................... CCTGAGGCCCTTTCCGGAAGATAAAGGTTGAAATT 5173282 37 100.0 32 ..................................... CCGAAACAGAAACAGAGAAGTTAAGCTGCTTC 5173351 37 100.0 33 ..................................... TATTTATTTGCTCTACTAAATACCAGAAACCCA 5173421 37 100.0 32 ..................................... CTTTTTAGGCTCTCTCATGTTGTGCTTAGGGT 5173490 37 100.0 35 ..................................... CCTGAGGAGCAGAAATGCTATCCCCTTGAATGTCC 5173562 37 100.0 35 ..................................... ATTCTCTCCTCCATTTTTTGTTGTGCCAGTTTAGT 5173634 37 100.0 36 ..................................... GACCTGCATCCACTACTGATAATTCTTTTCTCCTTT 5173707 37 100.0 31 ..................................... CATCATCCAGTCCGGTATGGCAGGAGTTGTT 5173775 37 100.0 37 ..................................... ATAAATCTCATCTGCCCCTTCTGGCAGATAAAATGTA 5173849 37 100.0 36 ..................................... TCCGTCAGCCTGAGGTAACCAGCTTGAGCCTGAGGT 5173922 37 100.0 33 ..................................... TCCCAGCGAGGATTTGAAGGGCTATGAATTCAT 5173992 37 100.0 35 ..................................... GCAGTAAATCGGAGTTGTCCCGACCTTCATCCCCA 5174064 37 100.0 36 ..................................... TAAATTCGGTCCCGTCGGCGAGGGTGGTCGATATTT 5174137 37 100.0 36 ..................................... TAAATTCGGTCCCGTCGGCGAGGGTGGTCGATATTT 5174210 37 100.0 35 ..................................... CTTAACGTACCCTTCTTCCCCTTCCAGAGCATAAA 5174282 37 100.0 40 ..................................... TCCCCTTTTCAATTATCAGGGTGTCCAGATTATCAACATC 5174359 37 100.0 30 ..................................... CCCCGGCGTCTCGGTTGCCAGCCGAGACCC 5174426 37 100.0 32 ..................................... CCCTAGACCATCTAATACAGGAATTTTTACAA 5174495 37 86.5 108 ......G..........................ATGG GGCGAGAGGCGAGGGGCGGGAGGCGGGAGGCGGGAGGCGAGAGGTGTCAGATGCGGAGAGCCATCCCCGACCTCTGACCCCTTGCCATTCGCCCTTTGCCCCTCGCCC 5174640 37 83.8 108 C.....G..........................ATGG GGCGAGAGGCGAGGGGCGGGAGGCGGGAGGCGGGAGGCGAGAGGTGTCAGATGCGGAGAGCCATCCCCGACCTCTGACCCCTTGCCATTCGCCCTTTGCCCCTCGCCC 5174785 37 91.9 32 C.....G.............................T TCAATCTCTCTTTCCTCAATTCCAAATGGAAC 5174854 37 97.3 32 ....................................T CAGAATTCCCTAATTGCTCTGGGGTTATCTGG 5174923 37 100.0 30 ..................................... TCTGCCCCTTCAGGGACAGAACAAGGTATT 5174990 37 100.0 33 ..................................... TCTATTCGAGGCAATGGGGCGGGACTCCCCAAA 5175060 37 100.0 34 ..................................... CCCATTCAATCCTTATATTTAAAACAATTCCACT 5175131 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================================================================================ ================== 28 37 98.5 39 GTCAGGACAGACACCCGGAATCTTTATGTGATGGAAC # Left flank : TAGTCGCTGTTCAGATGAAAAATCTGACCGGACTGTGATTTTTTTGAGCGGAACTGTCTCGTTTGATTTGGTTTTGTCAATTTGGTGAAATATGAATAACTGCATTATAATAAAAATAATTGTTATCTGAAAAGAGATTCAGAAGATAAGAAAAGCGTTTGACAATCGGAAAGTAAAAAGTTAGATATAAAAAATCCGGGTGTCGGTTTTGCCGGCAATCTGATTGTCAGAAAAAAAATTTTCATTTTCTGAAGAGTGAAATTTGTAACTGTCTTATTTTTAAAGATATGTTAAATCCGGGTGCGTTTTTTCGAAAAAAGTTAGTTTATTTTGAGTTAAAACAATGTCTTGGCATGTTTTTAGCAGTAAACAGGGTGAAAAGCCGAAATGACAGTTACGAGCCTTAACAAAAAAAATGGCAGGTATTATCTCTCTGATAATAAAACAAATCCGATTGACATTCAAAATCGGAACTGTCAGTTTTTGAAATTTCCGAGGGG # Right flank : CCTTCTCGTAAGAAGGATCAACAACTTCTAAGTAAGTTGCAAAAAGTCTTTTCACAATATATTAATCATTTAATATCAGATGGTTAGTATGAGGCTATCTGATGATACTCCGGTTATTCTTAATCACGGTGCGGATCGTCCGGAAGAAATACGCAGAATACGGGGCACAGATCGGACATTCCTTCCTCCTGTCAGACAGTTACAAAAACATTTTGACAAAAGGAAATATATATGATATCTTCCGGTTAAAAAAAGAGGAGGTGAATGATGAGAGCTTTTTTTAAACTCGGCAGTGAAGATAAATCGGCTTTGGAATCCGTGCTCACCGCGGGAAACGAGGTCGGACAATTCCGTCGCGCCCAGGCTCTGCTCTGGCTTGATGAAGGAATGTCCGTTCAGGATGTCGCACATCTTTCGCGTGTTTCCCGCCGGACAATTTATAACTGGGTAAACAGGTTCCGTGCTGGTAAGGATATTTCTCCGCTCCGGCGGATCGGAGA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGACAGACACCCGGAATCTTTATGTGATGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 8 6426505-6424277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6426504 37 100.0 35 ..................................... CAATTTCAGCAAAATCAACAACCTTTGGAAGTTCT 6426432 37 100.0 37 ..................................... AGCATATATTTCAAATCTTCGAGGGAGATGCCGTTTT 6426358 37 100.0 38 ..................................... TTCCTACGCCGCCATTCGATCCACTGTAATTTTTCGGA 6426283 37 100.0 35 ..................................... TAATCTTTGTTCGCCATATCATTCTCCTAACGGCA 6426211 37 100.0 36 ..................................... GGCGAACCATTCTTTCTTAGGGGGATGTACAGAATT 6426138 37 100.0 35 ..................................... ATCCTTACGGAATATTCAAGACATATAAAATGAAG 6426066 37 100.0 38 ..................................... AGCCAAATTTTGTATAAGTGTCCGTTAATCCAGCGAGA 6425991 37 100.0 36 ..................................... ATGATAATGGCTGTATTGTCTACGAAGGCAAAGAAC 6425918 37 100.0 34 ..................................... AAAGCACGATGGCCCGGCCGCCTTTCTGCATGAT 6425847 37 100.0 36 ..................................... AAAACAGCGTCCATTCTGCTTTCATCCTTCCCGAAC 6425774 37 100.0 34 ..................................... AAAAAAGAATTCCCCTGTCAAAAGAGGCATTGGA 6425703 37 100.0 36 ..................................... TTATCTGCATCGAAAAATTATCTTTCCAGAATACAT 6425630 37 100.0 35 ..................................... AGATGCGCCTGAGCAGATTTGTGGACTTGTTTTTG 6425558 37 100.0 33 ..................................... CCTACATGATATCCGGAAACTGGCTATGTGTTC 6425488 37 100.0 36 ..................................... TCGTCAGACGGACATCGAGATTTATATCATATAAAT 6425415 37 100.0 38 ..................................... CCTTTGGGTTCAAGACGCAGAATTTCTTCAGTCGTCAG 6425340 37 100.0 35 ..................................... TAATCTTTGTTCGCCATATCATTCTCCTAACGGCA 6425268 37 100.0 37 ..................................... TATCCGAGTCTGATTTTGGTAATGGCCGGAGTCTCAG 6425194 37 100.0 38 ..................................... TTGATCTCGTCAAAAAATACATGCACAAAGGGAAACTG 6425119 37 100.0 36 ..................................... AGCTGCTGCGCTCCTGATCTGGTCATGTAGAGAATC 6425046 37 100.0 35 ..................................... CCGAGGATTTGATTGATCTCAGCGTCATTTTTTCC 6424974 37 94.6 35 .................................TG.. TGGCGGGATAATATGCCTTTGCCACTCCTGTATTG 6424902 37 94.6 36 .................................TG.. CCCCTGGAAAATGTTTCCTGGGGAATTTCTGTCATC 6424829 37 100.0 37 ..................................... TTGAATAGTACGAAGCTTGTATCCATTCGTGAGGATT 6424755 37 100.0 38 ..................................... CATCTACGATATGTACATGTACATATAAAATCCGTGTA 6424680 37 94.6 35 .................................CG.. CCTAAGTGACCATACCCGTTGTAACCGCAACCATA 6424608 37 100.0 37 ..................................... CGATGATTCCCGGCTTCCCTTCTGGGTCTGTCCTATG 6424534 37 100.0 38 ..................................... AGAACATGGATAAAAAAGGTCTTTTTTTTGCATCTCAT 6424459 37 100.0 35 ..................................... TTCGAGTATTCCCTATCTGCCTCTTTTTCAATTTG 6424387 37 100.0 37 ..................................... ATATACAGGCATTAGCGGGAAACACTGTATCCCAGAG 6424313 37 91.9 0 .................................G.GG | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 99.2 36 GTTCCCTGCTCCTTCGGGAGATGAAAGGGATTGAAAC # Left flank : GAGGTGAAAACGGTGTCGTCAAATTTGTACCGGGAAGACGCTGTGAGATACTCCAACCGCCAGAAGCGGCGGATGCCTTTCGGGGGGATGCCGGGAGAGATCACTTTCGAGGGGGATATGACACCTTTCCGGCCTTTTCTGCTGCCGGGGGAGTGGGTGCATGTGAGAAAGAAGACATCTTTCGGGCCGGGGCAGTATGTTCTTGGCTGACAAACTGCATTTTTTTCAGCAGTTACAGAACTGAAAATCAGGTCTTGACAAAAGAGGTTGAATCTGGCAAATTCTGATTTGGCTCGTTCCCTGATATTATACTCTGATACAAAATTATGGGGCAAAAGGCCGATTTTTTAAATTTATTTCCTGATTTCAGAATGTTAACCGGACTCTGATACTGTGAAATCAGGCATAAAACTGGTATTACAGGATGAAAAATGGCAAAATATGACTGTTTGAAAAAAAATGTAATTTTCTGATATTAAACGTGATAGTTCCAAAATGCG # Right flank : AGGCGAGGGACTTTTTTCATATAGTTGCGTGTTATTCTGATGAAAAAGTATTGACAAATATGGCATAAAAGCTTATTCTGGAACAAAAGAAGGATTAATGTGATTATCACTTTTCCTGGAAACAGGGGATAGGCCGTTTGTTAAAAAAGACCGTCTGGCGGGATTGCTGTCTGATTTTAACGAGGATGATTTCAGAGATTTTTCGGAATGCTGGCACAACAGAGAAGAGGACTGATCAGAGCGGAGATGAGATGCGGAAGAACGCCTTATGAGTTTCACTGATTTCATAGAGAAAGCCCGACAAAATCTGGCTGTGGCGGAATGGTGTCACGAGAACGGACATTACGACGCGTGCTGTAACCGGGCATATTATGCCATGTATCACGCGGCGATCGCTGTGCTGGCAAGCAAACATATCACCCCCTCACAGACTCATATTGATCATGGATGGGTGCAGACTCAGTTTGTGACCCATTTTTGCAACAGAAACAAAATTTTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCTCCTTCGGGAGATGAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 9 6487661-6487409 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 6487660 32 100.0 40 ................................ CGACTTTTGCCCAAAATCCGTATTCATCAAAATTGATGAC 6487588 32 100.0 48 ................................ CGACTATGAAAGATACAGCCTGGGAGATTACCCCAGGTATGGTCAAAA 6487508 32 100.0 36 ................................ CGACATAACTCCATTCTCCTACCTCTAAGTCAAAAA 6487440 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================ ================== 4 32 100.0 42 GTTAGAACCTTGACCCGACCTGAAGGGGATTA # Left flank : TAGGAACGTATTCGAAACTATTATTATATCAATAAGATCACTTATGACAACTTCATTATTTCCAGTGTTCAACCACCAGCTTACCCCGGAGCAGGAGTCTGATGCCCGAACCTCCATCGGTGTCGGTGAGATAATCGCTCTTCCGCCGGATCTGAAGGAATTATGGGGACAGATTCCGCCGCACCTTTCCGAACTCGGAGATTATCTCGAACCGGTAAAAGACTGGCTCGCATCCCGTGCCAAAGCGGGCGATTATGTGCTGATTCAGGGGGATTTCGGCGCATGTTATATCATGGTCAGGTTTGCTTTTGAAAACAGACTGATTCCCGTGTATGCCACCACAAAACGGGAGGCGGTCGAGGAGCATCAGGAAGACGGCACAGTAAAGATGATCCATCAGTTCAGACATCAGATTTTCAGAAAATACGGGAAGTGATTTCGATTTTTAAGCTGTAATTGTTGACATCCGGGGCGGAATCTGTTTTTACAAAATGTAAATT # Right flank : AAGGGGAGGCGAGGGGCGAGAGGCCAGTGGCGAGGGGAATTATTCCGTGGCTTTCCCTATTCTTTTTGCCCCACGCCCCATGCCCCTCGCCCCCCATGCTCCTCGCCCCATAAAAACATTGACAAAAATGGCATAACAGCTTATTCTGACACAAAAAGAGGAGGAAATAATGCAATTATGTTCCAAGTGACAGTTCCGACCGGAAATGAGATGCGAAAGAATGCCGTTCACACCGCCATCTCAGGGAGATGCCGTAAAAAGAGTTTTAAAAACACGGCATCGACTTTGCCGATGCGGTTACAGTTTTCGATGATTATCATGCTGTCACGATAGACGATCCTGACCATGGTGATGAGGAGAGATTTGTCAGTATCGGCATGGATACCTATGGCCGTATTCTTGTTGTGGTCTATACATGGCGGAACCACACCATTCGTATAATTTCCGCCCGTAAGGCTTTGAAACGTGAACGCAGACAGTACGGAGGCTGAATTATGAGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAACCTTGACCCGACCTGAAGGGGATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 10 6511983-6511175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 6511982 37 100.0 39 ..................................... ATATAAACACTCCTACTCCGGCAAGATTTATTTTTGACT 6511906 37 100.0 37 ..................................... TCACACCAAGATTCCGCAGTTTTAATAAGATATTTAT 6511832 37 100.0 42 ..................................... ACGGTGGTCTTTCCCGTTCTGTTGGAGCCTACATCACAAAAA 6511753 37 100.0 43 ..................................... TTCTTTTGACTAGCCCCGATCTGGAGCCTTATTTCTTCAGTTC 6511673 37 100.0 36 ..................................... TTTTTAAACCACTCGTCCTTCCCGGCTTTCTGGCAA 6511600 37 100.0 44 ..................................... AATTCTTCCAGTGAAAAAGAAGTAAGCTTCTCCTCTCCTTCAAA 6511519 37 97.3 37 ................................A.... TCTCTCCACTCGCCGAAAACAAACCTATATAAATGAG 6511445 37 97.3 44 ................................A.... GAATCCACACGCCAAACATCAATGACAGCGTCGTAGCTGGTACC 6511364 37 97.3 37 ................................A.... AATCCTGCTTCAACATACAAACAGAACTCATCTCCAA 6511290 37 100.0 43 ..................................... TCGTCCTGATTTTTCCCGTCTTCTTTTGTAAATAGTCTTGAAA 6511210 36 83.8 0 .........................C..-.CG..A.G | ========== ====== ====== ====== ===================================== ============================================ ================== 11 37 97.8 40 GTTCCCTGCTCCCTCGGGAGATGAAAGGGATTGAGAC # Left flank : CGTCATCGGATGGCCTTCTGAGCATATTCAAACTTTTTCAATAATGCCGTTTTTGACTTAACAATCTGATTTAATATCAGATAACCTGATTTTATGCCAAAATGGCACATTGAAAAAAAGTTTGAATATACCCCTTTTCCGGAGTCCGGCCCGGAGCATATTCAAACTTTTAGGTTATGGGTGATATCTCGTTTTAAAAAGTTTGTTATTTCAAATAGTTAAAAAGGTGAAAAACAGCTCTTGACAGAAAAGTTTGAAGATGCTATCTAATCCGAAATTTCAGAAAGCATATTCAAACTTTTTTTCACCCTTCGGTTTCAATAATTTCAAAGGGTTGTCCCGAATCAGGGGGTAAAATTCTGCAAAGTCGGGGGTGTGAAAAAGAAGTATCTTCAAACTTTTTTCGGGATCAGAGCAATATACTGAAAAAATTGATAAAACATCTGAAAGGCGAATATCCGGCAAATGTCGGATCCCCGCAATCCCCCATAAAACCTGTT # Right flank : GATGAGACGGATTTTTCTGTCATCCGTTCAATCCTGAAATCCGCTGTCATTTTTTCGTAAAATATGACAACGGATGGAAAGGATGAAACGGATTTTTCTGTCATCCGTTCAGTCCTGAAATCCGCTGTCATTTTTTCGTAAAATATGACAACGGACGGAAAGGATGAAACGGTTTTTTCTGTCATCCGTTCAGTCCTGAAATCCGCTGTCATTTTTTCGTAAAAATTGCGCCTATGTTCCATCCCTTACAAGGTCAGGAAGGAAATTGTTATCCCGTTCCGCCAGCAGCCTGTCGAGACTCGTGAGACCCGTCTGATTCTCGTAGATGATAAGATTCTGCTGACCCCCGTTGCCGTTCGTGAGATCACACCAAAACTCAGAGGTCGTTTTTGTCAGTATCTCAGACTGTTGAAACTTAGGATTGGACTTGTCGCCAATTTTCACAGATCCAGCTTGGAGATTGAAGTGGTCAGAATATGACAGCAGATCAGAAGATGGGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCTCCCTCGGGAGATGAAAGGGATTGAGAC # Alternate repeat : GTTCCCTGCTCCCTCGGGAGATGAAAGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 11 7841540-7838891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7841539 37 100.0 36 ..................................... TTTAGAACGGCTCGGACATCGAACAGCAACCCGTAC 7841466 37 100.0 34 ..................................... TCGCCAACCGCCAAACTGAAATTAGCTATAGCCA 7841395 37 100.0 36 ..................................... CATGTCCGATCTGGGTGTAACTATCCGTTTTACGCG 7841322 37 100.0 35 ..................................... ATTACAGCACTGATTACAGCATCATTTTTATAACT 7841250 37 100.0 37 ..................................... ACATGGCTGGAAATATTATAAAATCATTCAAAGCCCC 7841176 37 100.0 35 ..................................... TTTTCAGGCTGCGCCAAATTCAGCGGCCTTATATC 7841104 37 100.0 36 ..................................... ACATCTGCGTTATTCCGGGCTTGCCACCGTTCCCCG 7841031 37 100.0 35 ..................................... ATCGCTTCCCACCCGTCTCTTGCATCATCCTGAGT 7840959 37 100.0 35 ..................................... AAAAATCATGTTTTGAAGAGTCATAAACGTCCGCT 7840887 37 100.0 35 ..................................... CACGTACTACCCACCGGCAGATGAAGAAAGTCGTA 7840815 37 100.0 37 ..................................... ACAGGAGCGAAATCCGGATCAATCGGGGCGTATTCAA 7840741 37 100.0 37 ..................................... AAACTCCTTTCCCATTTAAAGGGTTCGCACCCTTTTT 7840667 37 100.0 35 ..................................... GAGGATTGCGGATGACGATCCGTGTCCGATCCCAA 7840595 37 100.0 37 ..................................... TTATAAATTCCTATTGTTATGCCTACTTCCATAGGCA 7840521 37 100.0 36 ..................................... AACACAAATTTAGAATAATCATTGAAAATGTCATAG 7840448 37 100.0 36 ..................................... ATGATGAGGGAAATCCGACGGTAGAGGTTCACATCG 7840375 37 100.0 35 ..................................... CCCATGACATTCATGAGGAAAGTCGTTTCGTCCGG 7840303 37 100.0 35 ..................................... ATAAAAAACCGGGGCATTCCGGGATGTTCGTATCC 7840231 37 100.0 34 ..................................... TTCCCAATGTTCTGCGGACACTCGGAAACAGTTC 7840160 37 100.0 35 ..................................... TGGGCCGTCACAATCTCATAATACACATCTTCCGG 7840088 37 100.0 35 ..................................... TGGGCCGTCACAATCTCATAATACACATCTTCCGG 7840016 37 100.0 36 ..................................... CAGCGTTATCAAGGATGGGATTGAGGATAATTGTCA 7839943 37 100.0 36 ..................................... CGTGATAGGATTCCTCTATCGCCGCACGCTCCGAAG 7839870 37 100.0 36 ..................................... TTGAGGACAAAAATATCAGCATCACGCTCCGCCTTA 7839797 37 100.0 36 ..................................... GAGGCTGAGGAACCGGAAGTGACTGCTGAAAGCTCG 7839724 37 100.0 36 ..................................... GAGAGCCTCGGCGATCTGCATCACTATCCACTCCTC 7839651 37 100.0 35 ..................................... CCTTTTCCGGGCAAGCTGCAATATGAGGATTGGCG 7839579 37 100.0 36 ..................................... ATATGCCTCTTCCCGGGGCGTCAGCATTCTGATAGT 7839506 37 100.0 33 ..................................... ACGCTATCAAGAGGGAAGTGTGGGTTTTGCCAG 7839436 37 100.0 36 ..................................... CCAGATAGCAATATTTTTCCGAGCCGAAGCCGGTCA 7839363 37 100.0 37 ..................................... TACGGTGAGCCTCGTCACAAATAATCAGATCAAACTT 7839289 37 100.0 35 ..................................... ACCCGGCAGGGGCTGAAAAATTAGAGTTCAAAATT 7839217 37 100.0 36 ..................................... ATGATCTCTCCGAATATCATGCCGAGGCCGCAAAAT 7839144 37 100.0 34 ..................................... ATACAGAGGCAGGGAAAGCATCTGACATTGGTGA 7839073 37 100.0 37 ..................................... TACGGTGAGCCTCGTCACAAATAATCAGATCAAACTT 7838999 37 100.0 35 ..................................... ACCCGGCAGGGGCTGAAAAATTAGAGTTCAAAATT 7838927 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ===================================== ================== 37 37 99.9 36 CTTTGAGAACCACTTCCATCAAAACAAGGATTGAAAC # Left flank : TTCCTTTTTGTCAGGATGATTTCAGGCGGATAAAGGTGATGGGACAGGGGTTTGACCGGAAGCTGGTGAATGACGAGATCCTCGCTGAGTTCTTCTGATGGATGACTGAGACGCGGGGGTTGATTGCCGCGTCTGAGTGTTTCCGGTTGTGACGGATTTTATTATCTATTATTATTTCAGGGCGTTAATAAGATGCGGAGCGTCGCAGTTTTTCGGATGAGATCCTGCGATCCCCCGCACCGCCCTGCCTGAAAAAAACTGCTTGACTTTACTTTTTTTTAGGGGTAAAAGAAAAAATAATTTTGACATTCTTTATGACAGAATTATTCGAAAAAAATATGTTAAAATAATTTTATTCTAAAAAAACAGAAGGTTCACGCTACTCTGACAGGTCAGCATTATGCACTCAAAGGTCCCGAAAAGGTCTGATACAAATAAATATCGCTCTTTGAAAAAATATATTAAGTTTTTGATATTAAATCAAAAATCTTGAAAATGGA # Right flank : GATATATAAATAAAATTAAAGAGTTATCTCCTTAACAACCAATACTGAACCGGATAGGAAAGGCTTATTCGAGGGCTTATTAACAGGTTTATGAAAATGAGATATATTCTTTTTTTGATCGTTATTTTTTGTGGTTGCAGCTACCATGAGAGCCAGGTTTTGCAAAAGCAGTCTGACATTAGCCCAAGCTGGGTAAACGAGTTAAGCACTGAAGTAATTGAAAAAGAACTTCTCGGAGCAGAAATTGATTCATCTGATCTTTCGCCCAGGCTCAGTCAATGGCTTGTCAGGCAGGCTGACATTACCGGTCAATGGGATTCCTCATACTGGCATGATGGCGTCGTACACCTCACGATCAGGAAGCGTGCTGACGGACGCTTTGATATTGTTTACTATGCAAGGGGAGATATCACATCATGGGTTCTGAAACGGATAGCCAATTTTGAAAATGGTGTTCTTGAATTCAACAAATCAGTCTGGGAGTACGGACCATATGATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAGAACCACTTCCATCAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 12 7862206-7852297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061800.1 Desulfonema magnum strain 4be13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 7862205 33 100.0 33 ................................. CTACATGGATGAACAGCGGGCTATTGATATGCT 7862139 33 100.0 33 ................................. TTATGACAAATTATAGACCCCATGTCAACCCGG 7862073 33 100.0 33 ................................. GCTTTTAACCGAGGGTAAGCAAGTCTTTGTCAT 7862007 33 100.0 34 ................................. CGGACGAGCATCCGGCAAGTAAAAACAAACCCAA 7861940 33 100.0 33 ................................. GGGTGTCCTTGACCATTCAGCGGAGTTGATTTG 7861874 33 100.0 33 ................................. CTGCATTTTTGCCAACATTTTTGCTGTCTGCAT 7861808 33 100.0 33 ................................. GGTTATTCCCTGCTTCAATAGCGCATACCGGTC 7861742 33 100.0 35 ................................. AAATCGAATATGCCATTTTCCAGGTTCAACAAAAA 7861674 33 100.0 34 ................................. TCTTTTGTGAGGGGATGGCTACGGGCTTATCAAT 7861607 33 100.0 33 ................................. CGCATCAATCAAGAATGACAGGATTGAGAAGAC 7861541 33 100.0 33 ................................. CTCATATCTTATCCGCACAAAAGATCCCTGGAA 7861475 33 100.0 31 ................................. CTCATTTATGCTGCCTGTGAGAGAATACCCT 7861411 33 100.0 35 ................................. CGTTCCGCAATGACTCCGCTGTTTTCCAACGCTTT 7861343 33 100.0 33 ................................. AGCCGATCTTGAGCCGGGACAATATCAACCCGG 7861277 33 100.0 34 ................................. CAGATGTTGATCACCCTCAATCCGCCATTGGAAA 7861210 33 100.0 34 ................................. TCCGGATTGAACTGGCATTATGCCGCCGCCGGAA 7861143 33 100.0 36 ................................. CCTTGCAGAACGGACATTGTAGACGCTTTTCGCCAG 7861074 33 100.0 31 ................................. TCAGCATCAGCATATTTGTTGTCAAGATCGT 7861010 33 100.0 33 ................................. CTTGCAGGGTTTGGACGCTCCTCTTTGAGTTCA 7860944 33 100.0 33 ................................. AAAAAATATGTCAAATGATTTTTTGCCTAAATA 7860878 33 100.0 33 ................................. TCTGCCTGATGGAATTTTTGAAGATCCGGAGGG 7860812 33 100.0 33 ................................. TGCATCTGGTCTTCCGCCTGGTGTGACATTTAA 7860746 33 100.0 33 ................................. TCAAAACCGGGTATCAGTTTTCAGGTGACTATG 7860680 33 100.0 34 ................................. CGGTTTCCCGACTTTTGCCCGTAAACCAGTTCTG 7860613 33 100.0 34 ................................. TTTGACGAGATCAATAACTGCCTGTACGAAACCC 7860546 33 100.0 33 ................................. TATTGCTAGGAAAACTGTTGATCAGTGCGGGAG 7860480 33 100.0 34 ................................. AAGAACAAGTACCTCAACCGTAAGCTGGCAAATC 7860413 33 100.0 34 ................................. GGTTTGGGTTGGTTTGGTTTGGTTTGGCTACGAA 7860346 33 100.0 35 ................................. TTTGTCGGAGTAATGCGGGAGCGATAGAACAGTGT 7860278 33 100.0 32 ................................. CGTCGTGAGCGTGTCAACATCCAGGATTTCCT 7860213 33 100.0 35 ................................. CGGCGCACTGCTTCAGGGTTTTGCGATTCGGGATT 7860145 33 100.0 35 ................................. TTATTATGGAATGGATAGACGAAAATTCAGAATGG 7860077 33 100.0 34 ................................. GGCGTCATCCGGAAAAAAAATCGGGTCAAAAAAA 7860010 33 100.0 36 ................................. AATCATGAGTTTATGCACCTGCTTCTCACGATTTTT 7859941 33 100.0 31 ................................. GAGAGCGGACATCCCTGTCTCGAACTCAGAC 7859877 33 100.0 36 ................................. GTGACAGACGGCTCAGGCTGGGATAGTGCCGCAACT 7859808 33 100.0 35 ................................. AATGACAAAGTGATTTAGTTTAAACGGTTTTCATT 7859740 33 100.0 33 ................................. GGGTTTGGCTACGAACCGGAAGGCGGAAGGCCA 7859674 33 100.0 36 ................................. TAAAAAAAAACTTTCCCTTCGCCACCGGGAAAGCGA 7859605 33 100.0 30 ................................. CGGTCTGATGTCAGGGATACAGGGGCTTGC 7859542 33 100.0 36 ................................. CTTAGCAATGAGTCCGCTTTTGCCGCGGCGAGCTTT 7859473 33 100.0 34 ................................. AGATGATCGGACGCGGGGCGAGATGTTACCCTGG 7859406 33 100.0 33 ................................. AAGCATTTTCAACAACATGGCGGTGGAATCTTT 7859340 33 100.0 35 ................................. ATTACCAGAGAAGACGGGCATACCGTGGTGTTCGA 7859272 33 100.0 34 ................................. AAATAATATTCAACAGCAAATGATCGCCCCCTTT 7859205 33 100.0 36 ................................. AAGAATTATAAGCATCAGCTTCACACCGCTCTGATA 7859136 33 100.0 35 ................................. CCGCCAGTCCGGGTTTGACATGGGCCAGGTATCTC 7859068 33 100.0 35 ................................. CCATAAACAGGTCTGATTCGGTGAAACGACTGAAT 7859000 33 100.0 35 ................................. AAAGAAGTATCAACAGCGGTGACTTCTTTCCACCA 7858932 33 100.0 33 ................................. TCTTCTTTGTCATTGAGATCAAGCCCCGCTATT 7858866 33 100.0 34 ................................. TGATTTGGGGAGGGAAGGGTTGCGGCAAATCAAA 7858799 33 100.0 34 ................................. CGGGCGAGCATCCGGCAAGTAAAAACAAACCCAA 7858732 33 100.0 30 ................................. TATCATCGGACAATCTAAAACTGCTAAAAG 7858669 33 100.0 33 ................................. TCTTTCGGGTTGTCTTTTGGTCGTTTTTGTGTT 7858603 33 100.0 34 ................................. TCCTCGTTGCCTGTCGCTCGGCGGTTTGCGTCGG 7858536 33 100.0 35 ................................. TCCTCGTTGCCTGTCGCTCGGCGGTTTGCGTCGGT 7858468 33 100.0 34 ................................. GTCTCCTCGCCCTGTCCGTCCGGTGTCGTTCCCG 7858401 33 100.0 36 ................................. TCTCCTCATACCTCGTCCGCACAAAAAACCCCTGGC 7858332 33 100.0 36 ................................. CTCCCCGAACTTACGACGCCCCAAAGCTTTTTCTTT 7858263 33 100.0 37 ................................. CGGGTTGTTGCAGATGTATATGTTGACGGAAAAAGCT 7858193 33 100.0 34 ................................. CGCAAATAGCAAGGACAATGCAAAGGGAAGGGGT 7858126 33 100.0 35 ................................. TGGCGTTCCCCGGGGCAAAGAGCCGGGGAACATGG 7858058 33 100.0 35 ................................. TCCTTGTGTTCTTTAAGCCGGTTTGATGTGATCGC 7857990 33 100.0 34 ................................. TCACATATCCGAAATTAGGCTCCTGCTGCTCTAT 7857923 33 100.0 32 ................................. TCTTGGTGTCAGGTCGTCTCAGCAGTCGGCAT 7857858 33 100.0 35 ................................. TAATCCGCATATCATCGCTTGTCCGGAAAAAGCGG 7857790 33 100.0 34 ................................. TCGAATATGTCCTGCATCACAGGATTAGTATCTT 7857723 33 100.0 37 ................................. CTTTCCGACTTACGCTGAAGCTTACGAATACGGCTTG 7857653 33 100.0 36 ................................. CTGAACAACCCTGAGATGGCCCTTGTTCTTCCCGGA 7857584 33 100.0 34 ................................. CGAATTGGGGGAATGGCAGATCACCAGGGTCTTT 7857517 33 100.0 33 ................................. TCTTTGTATGTCTGGTACACCTTGTCTGCCAAA 7857451 33 100.0 34 ................................. TGATTATGCTTGGTTTCTGATAGGCGGCCGGAAT 7857384 33 100.0 35 ................................. TGGTCAGTCTGGTATTATTTATTGTGGGACAAGAA 7857316 33 100.0 33 ................................. TGAAGAACAAGGGGTTTGTCAGCGTCACAGGTA 7857250 33 100.0 36 ................................. TCTCCTTTCGGCAGCCAGAACGACGCTGGCAGTGTC 7857181 33 100.0 36 ................................. TGATTGTAGCTTTTCAAGCTGTTTCCGAGCCGGTTC 7857112 33 100.0 33 ................................. CTTGCAGCGAACACAAACTGTCAGACCGGGCGA 7857046 33 100.0 33 ................................. AGCGCACGTTCTATAATGTCAAAAGGCTATCTG 7856980 33 100.0 33 ................................. ATCTGAACAGCCAAAAATGCAAGTTCCGCATTG 7856914 33 100.0 35 ................................. CAGCCATTTACCGTACTTTCGGCCGCCCTAAAGCT 7856846 33 100.0 34 ................................. CAACAAAGCCCGGGCCCGTTAAGCGCAAACGCAA 7856779 33 100.0 33 ................................. AGCTTGTATTACAAGCATAAATAAATCAGCGTG 7856713 33 100.0 33 ................................. TCATCCTGTTCGGCCGACCTGAAAGCGAACATG 7856647 33 100.0 32 ................................. AACGCATTGTAAAAAAAGAAGGGGGGTAGGTA 7856582 32 97.0 30 ...................-............. CCTCGTGTTGCCTCACTTCCTAAATTTTTT 7856520 33 100.0 31 ................................. GCTGTCATGGCCTACTTGGTGATGTTGTGAC 7856456 33 100.0 34 ................................. TTTTGCGACGTTCCGAAGCTCGGCGTGATCAGCG 7856389 33 100.0 34 ................................. ACAGATTGGGGATAGCAAGTCAGCATCTGTTCAA 7856322 33 100.0 32 ................................. CGTGTCAACAGTGTCGAAATGGCAGTTTCCGC 7856257 33 100.0 32 ................................. TTGAAGGAGGTTTGGCAGCTACCGAATATAAA 7856192 33 100.0 29 ................................. ATTACCAAGAAGACGGCATACCGTGGTGT 7856130 33 100.0 24 ................................. ATCTATATCTCCGAACTGGGAGGG Deletion [7856074] 7856073 33 100.0 34 ................................. AGGCAATTCAGGCGGAAAAGCACGGGAGATATCA 7856006 33 100.0 34 ................................. AAGACGAATGTCAGGAACTGCTTGAAGATTTGAT 7855939 33 100.0 35 ................................. GGCGCGGTGATCGGCGCGCCCCTGAAGCAGATATC 7855871 33 100.0 32 ................................. ACGACTCGAAAAAATCAATTTGAGGGTCCCAG 7855806 33 100.0 34 ................................. GAGCAAATCAAAAGCCGCTGCAACAAAATTCGTT 7855739 33 100.0 30 ................................. GTGCCGCCCGGGGCGTTGCAGGCGGTGCTT 7855676 33 100.0 33 ................................. ATATACGGTAAAAGAATATCAAAAAAATCTCTG 7855610 33 100.0 34 ................................. TCAGTCAAGCGGGATTTTTCCCATAGCCTTAACG 7855543 33 100.0 33 ................................. AGATGCTCGTTGTAATAGTCAGGGTTGTTAAAA 7855477 33 100.0 35 ................................. GTTTGTCTCTGCCAGTCTTAATGTCTTACCCGATA 7855409 33 100.0 35 ................................. AGAATTATCATAATTAATCAAGTCGCCTGAATAGG 7855341 33 100.0 35 ................................. AAATATGACGAGATCATCAGTGTATGTCTCGGATG 7855273 33 100.0 34 ................................. TCGGATGTGTGTCTGACCGTGACATCTGTATTGA 7855206 33 100.0 34 ................................. TGCGTAAAATTAAGAGGTGTCAAATCATCAGGAA 7855139 33 100.0 33 ................................. TTTGGCTCCGGAAGAAAACAATTCCACCCTCCG 7855073 33 100.0 33 ................................. ATCTTTAGAGAATGCGGGATAAGTTTTTGTGCC 7855007 33 100.0 35 ................................. AGAAAAGGTTGCGGAGGTTGCGTCAAACAGAGGAC 7854939 33 100.0 34 ................................. AGCCTCTGACGGCTGATTTTGTTGGCTCATCGGA 7854872 33 100.0 35 ................................. CCCCGTCCGTTTCACTGCCTTATTCTCCAAAAGTG 7854804 33 100.0 35 ................................. CCGCATCAACCGGAAATATCCACGGAGAAAGGTGT 7854736 33 100.0 30 ................................. GCTTTATGAGTCAACAGCGGCTGAGAAGGA 7854673 33 100.0 34 ................................. CACGCAAAAATGCTTTTCCCCTTCTTTTTTCCAA 7854606 33 100.0 36 ................................. CAGTGGCACATCCGCAGTCAATAGCACATGGGCATA 7854537 33 100.0 35 ................................. CAGTCACTCAGGTCAAATCAGCGTCGTGGAACATA 7854469 33 100.0 33 ................................. TGTTTTTTGTCAAAATATGTGTTAAGGAATTTA 7854403 33 97.0 34 ...................A............. AAATCCCCGATACCAGGCTCGCAGAAAATCCTCA 7854336 33 100.0 34 ................................. ATCCCACAGTCCAACTCATCACATGGCGTGACAG 7854269 33 100.0 34 ................................. TCCGATTCCGTATGCGTCCGGATACTGTTCTTTC 7854202 33 97.0 30 ...........T..................... AGAAGGCTTATACGGACACGGAGAAACGAT 7854139 33 100.0 34 ................................. TGTGCCATGATCCAATATTGCCCTGTAAATCCTG 7854072 33 100.0 36 ................................. CCCTCACAACGGCTGTCGAGCCTGCCGTTTCTGAGA 7854003 33 100.0 30 ................................. AGAAGGCTTATACGGACACGGAGAAACGAT 7853940 33 100.0 35 ................................. CATATTAGAATCCTGTCATTGTCTCGCGTGTGAAA 7853872 33 100.0 36 ................................. AATCCTCCTTGCGTTACGTTTAGTTATTGACGTTAC 7853803 33 100.0 33 ................................. AAGAATACCGTCCCAGGCTTGGAAACAGCAGAC 7853737 33 100.0 33 ................................. CGAAAAGACTGAAAGCGCACAGAGCCAAAGCTG 7853671 33 100.0 34 ................................. TGGGAACTGCATGAAAAACACGATGGAAATATGA 7853604 33 100.0 35 ................................. GGGAACTCAGGGAACATTTTGCGCTCCTGAAGGAG 7853536 33 100.0 33 ................................. ACCGCGACACTCACAAACGATTTGAGGCATACT 7853470 33 100.0 35 ................................. ATAGTAGCGATGCCCTACTTTGCCAGAATAGGGAT 7853402 33 100.0 34 ................................. CCGTCTCCTGCTTTCAATCCTGACGTTTTGCGCC 7853335 33 100.0 34 ................................. GTTTCCAGAGTCTCAGGTTTTCTGAGACTTCGAA 7853268 33 100.0 33 ................................. TGGTATCCGGCTTCCGAACCGTGTGAAAATGGA 7853202 33 100.0 33 ................................. TCAGAAGACTACGGGGAAGCTTACTCTTATTCT 7853136 33 100.0 33 ................................. ACGGGGCCTGTGAATGACCGACTGGCAAGGGCT 7853070 33 100.0 35 ................................. TAATTCTTAACCGCTTGCCCGGTGCGATAACCGGG 7853002 33 100.0 34 ................................. CTTGTAATTGTATAGCCAAGTTGCCAGTAAATAA 7852935 33 100.0 34 ................................. TACCCGAATGCTTGGAGCTCCGGAATTCTGCGTG 7852868 33 100.0 33 ................................. ACCCAACTGAGCTTGTACTCAATCAGATGCGCT 7852802 33 100.0 34 ................................. TTATCCTCCTTTACAGTTAAGAATTGTGGTCAGG 7852735 33 100.0 34 ................................. AGGAAAGCCAGATCACCGGTGATGGTGTCAACTA 7852668 33 100.0 33 ................................. TTGCTCCTCGCCCGTAAATTCCAGTTGCTCCGT 7852602 33 100.0 37 ................................. TTGCATAATATTCGATCTGCTTTTTTCTGACTGAAAA 7852532 33 100.0 36 ................................. GTGAGCCTCTCTTGAGAGTGCAAGGCGTTCGATGAC 7852463 33 100.0 34 ................................. GCAGTTCAGCCAACATCTTAACGAATCTGTCTCT 7852396 33 100.0 34 ................................. CCCACCCGTCAACGTATTCTCCGAAGTGAGGGAT 7852329 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 149 33 99.9 34 GTCGCTCCCCGCACGGGGGGCGTGGATTGAAAC # Left flank : TGATGTGGCTATGGATGAAACCGGACAAAAACGCCTGCGACGGGTGGCAAAAGCTTGTAAAGATTACGGACAGCGGGTGCAGTATTCGGTTTTTGAATGTATTCTTGATCCGGCACGGTGGACTTTTCTGCGTCAGAGACTGATTGATGAGATTGATCCGGAAAAAGACAGTCTTCGGTTTTATTTTTTGGGATCAAATTGGAGGCGCAGAGTGGAACATATTGGCGCAAAAAAGGCGATTGATCAGGAAGGACTTCTGATTGTCTGAAAATTATCTGCGAACCTGAAGCTCACAAATCAGCGTTTTCCGTGTTTAGCCTTACGGGACGCTGATTTGTGCCATAAAAATCAAATAAAGGTTCGCACCAGACATAACTAGTTAGAAATAAATGAAATTATAATTCTTGATTTTTCTGATTCGATGTGTTACAAGCTGAACACTTTAGGATCGCAGAAAGGAAGAAATAAATACTATGGCTTCAGTGGGTTAGCCTGAAGCG # Right flank : TGAGCATTAAGCAAGCCGCATATTTGTAGCAGCATTCATCGTGCCGGGCCGGTAAAGCACCGTGCAGCATATTCACAGCATGATTTACTGCAAATATGCCGCCCTTACAGGGCTTAGTCGGCCCTCCGCTAAATCCGTTATAATCAGCCGTTTTCATCCAACAGGTGAAAACTCGGAAAGCCCCGAGGTTCTGATATTACAGGCCGGGAATCATATTCAGGCCAAAGAATCGCTCAATTTAGATTGAAACAACCTCACTTTCATCTTTCTCGCCATCATCTTCCTCGTCTTTTTATCGTCTCCCGCACGGGGGATTGAAACTTTACAACACGTTCAAAAACCAGTATAAAATTTTCTAATGCTGACGGATTTTGTTGACAGTCAGGCTCCGAACAACAAGAATCTGTGCTGCCCTGAGGTCCGGCCCCGAAAAGTACAGGGACGGCAGATAAGAAGGGGAAGACGCATTTTTCCTTTTCTTATCTGCTTTCCCTGTACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //