Array 1 926067-925565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUL010000001.1 Lacticaseibacillus absianus strain YH-lac21 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================== ================== 926066 28 100.0 33 ............................ CCCTCTTCATCCGCTCAGGGCTGATCACGACGA 926005 28 100.0 33 ............................ CACCGGCTTTAGTGTGAGCGACCCCACCAACAA 925944 28 100.0 33 ............................ TACTGGTGTACAGATCGTAATCCCTTTTGCTTA 925883 27 96.4 33 ..........-................. CATCAAGTGCTTCACCGGAAAAGAAGGCGCGAT 925823 28 100.0 33 ............................ TCCCCGTGTTACCGCACAGGGGCAGACGACGAA 925762 27 78.6 79 ...T....-...T...T.....G..C.. GCGACCAGCGTGCTCCCGCAATTTGGCCCGAGCTACTCGTTGGGTGCGGGCAAGTCTAGTCTCAGCTTTGGCCATTCAT A [925740] 925655 28 75.0 34 T..T.......ATCC.........C... CGGGAATTACAACGCGTTGTGGAGCTATATTATT 925593 28 78.6 0 T..T.......AT.G.......A..... | T [925567] ========== ====== ====== ====== ============================ =============================================================================== ================== 8 28 91.1 40 GTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : AGGGGGTACCGCTGGGAGAAGCGCTAACAGCATTGCGCGAATTCGTCGGCGACAGAACGATTGTCGGCTACAATCTGCCGTTCGACGACAAGTTCCTAGCTGCGGCATTGCGCGCGGTTGGGACCGAGCCGCTGGCGAATCCGCGTGTCGACCTGGTGCCGGTGGTCAAGCGCGCACAGAAATTTCTCGACAACTACCAGCTGGCAACGGTGCTGGAAAAGTACGGCATCATCAATGACCGCCCGCACGATGCGCTGGCGGATGCCGAGGCCACGCTGGCGCTGGCGCAGCGGCTGGTGGCGGACGGGCGGCTGAAGCTTTAGGTGGCTTCAAACGTGACAGTCTGGTGGTTCGGGTAGATAATGGGGGACGGCCAGGATATGCGGTCACGTCACTTGCTGCGTCGTGGAAGCGGGAAGAGTATGGTGATTCTCAGTTGAGTTGATGACTGGAATTAAGCTCAATCTTTGGCAAAGCTTCTGGATTAAGGTTTGCTTAGT # Right flank : CCGGAAGCCGCTTGCATAGATAGCCTGAACGACTATGCCTTTGCGCTTCGCGGGGGTGAGCGGCAGCCGTGTCGCCATTCGGCCGAGACAGCAACGAACCCGATGACAAAAAGTCATCGGGTTCGTTTGCGTCCAATGGTTTTGCTTCACGCCTCGCCGTACTTCCGCGCGAAGTCGGCAATGATTGCGTTGCTCTGCTCGGTCCGCACCAGCGCCTTCCGCCACGCCGCCGGCACATCGCCATCCAGGTGCCCCGCCTGGTACAGGCAGGCGGCAATCTGGGCGACGGTGTCGGTGTCCTCACCGAGGTTGGCGGCGGTCAGAATCACGCCTTCAATCGAGCACCCGTTCGCCGCGCACCACACGGCGGCCTCCAGCGTGTCGATCACGTAGCCACTGCTGCGGATCTCGGCGCGGGGGGTCTGGGCAAAATTCGCCTGCAGCAGCCGGGCGAAGTGGCGGTGCTCGCCTGTGGTCGCCGGCTCGAGCGCCACGCGCTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 936442-936048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUL010000001.1 Lacticaseibacillus absianus strain YH-lac21 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 936441 28 100.0 33 ............................ CAATACACGGCACGGCCGATCCTGTAAACCCCT 936380 28 96.4 33 ........A................... CGGGCGAGCCTTTGAGGTGATCGCGGCGGGGAC 936319 28 100.0 33 ............................ CGCCCCCGGCGGCTTGGCTTAGCGCCGCGCCCC 936258 28 100.0 33 ............................ CATATAATAGGGCATAGCATCCGATAGCTACTG 936197 28 96.4 33 ..........G................. GTACACACTTGTTCCGGCCACGGCGTCGGCCAG 936136 28 96.4 33 ........A................... TACAAAAATTCAGTTGAATCGCAAACACCAGAG 936075 28 78.6 0 ......T........A....AA..TG.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.4 33 GTGCTCCCCGCATAGGCGGGGGTGATCC # Left flank : CGATGCGTTCAACCGCGGCGACCGCAACTTCTTTCTGGTCTCGCTCAAGGCCGGTGGGACCGGCCTCAACCTGACCGGCGCCGACATGGTGATCCTGGTCGACCTCTGGTGGAACCCGGCGGTCGAGGACCAGGCCATCGCCCGCGCCCACCGCATCGGTCAGACCCGCAGCGTCGACGTCTACCGCCTGATCACCAAGGGCACCATCGAGGAGCAGATCGTGAAGCTCCAGGAGAAAAAGCGCGACCTGGTCGACCAGATTCTCAGCGGCACGGAGAACAAGGCCAGCCTGACGCCGGAGGAGATTCGGCTGATTCTTGGGGTCGAGGAGTAGCAGCGATAACGGAAATGAGAGGGAGTCGGTTCGCGGAGGCGGGCCGGCTTATTTTGTGTGAATGATGTGAGACAACGAGGAGAGGAACAATGGTGTCGGTTGACGAGTTGATTTAAAATGATACACTTTCAATATGGAAATGCCGGTTTGATGGGATTTGGTTAGT # Right flank : AATAATAGATTAAGCTTCGTAATTCTCGTAGTGATAGCTCCACATCTACAGCTGTAATTTTCAGAATACACCTCAAGATAACTCGGCATGACAGTGTGTCTCAGATATGCGTGTGCTATGCTTTGATCCGTTTCAAAAAACATTGAAGTCGCCGTATGACGGCTTTTTTTGTAACGATTTCTAGCAGCGCGAGGTTCTGAAAATAATAATTTAGAACAACTTTCACCGTAGCAGTTCTCAGTCAATTGAAGTCGCTACTTCCTCCGGAACTGATTATATATATTCCTCCTCAAACCGGTTAGACTACCGATTCGCTCTATATATAGACAACATCAAATTTTATATCTAAGGCTCTGATTATAATGATATATCGATGGGCGAACACTCATCTAAGAAGCCCACATACTTGCACGCTATTTCATGTGCCGTTATGATAGGCGAATAGAACCCGTGAGGAGGATCTGCGATGACCTTGCAACGTGTGCCATACCAATCCACTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : GTGCTCCCAGCATAGGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4912-4213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUL010000005.1 Lacticaseibacillus absianus strain YH-lac21 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4911 36 77.8 31 ......CT.T..G..AAC.C................ CACAACGCCCGTGTCGCCGATTTTCACGTCT G,T [4896,4901] 4842 36 100.0 30 .................................... AGGTGTGACGTGCAAGTGCTCGGCTACCGC 4776 36 100.0 30 .................................... ACGTAGTTGAACCCGTCGCGCTTGGCGTAC 4710 36 100.0 30 .................................... CGCGCGGGGCCTTGCACTTGATGGCGTACT 4644 36 100.0 30 .................................... ATGGCCCGATCGGCACGCCTGCCGATACCA 4578 36 100.0 30 .................................... CAGCGGCGTCGCGCTGGGCTTGGTCAAGCA 4512 36 100.0 30 .................................... CAACCGTGGCCCAACTTGCTATAATAGACT 4446 36 100.0 30 .................................... CAGAAAGCCACTAAAAAACACTCAAAAAGG 4380 36 100.0 30 .................................... GCAGGAGTTCGTGGTGGGACTGGCAAGCAG 4314 36 100.0 30 .................................... CAACAGCGTAGGGCGGCCGCGGTGAGTAGG 4248 36 86.1 0 ............................ATT..AG. | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 96.7 30 GTCTCAGATAGATGTCGTATCAATCAGCGCCAGCAC # Left flank : CCGTATCGGCCTTTTGCGGCTTTATAGGCGACGTGTAGTTGTGCTCGTATTTCTTCCCGACGCTTCTCGGTTGGCGTTTCTTCGTGATTGCAGTAGCGATAATAAGAACCTCGTGGTACGGATAAAGCATCGGTGGCTGTGACGATCGGGAAGTCGTGAGTTTCAATAAAGGCATACAAATCGCGGTTCGTCACTTGCTTTGTTTCGCGAAGATGCCCAAGGCTTTTTTTAGGATCTCATTCTCCTGCTTCATTTGAAGGTATTCGGCTCGCATCTTCGCATATTCTGCACTTGAAGGATCCTTGGTCGATGCTTGTTTATGCTCAGTGAACCATTTGCCCAAAGTTGCGATGGGAACGTCGTAGTCTTTACTTAATTCGCCTGGTCCTTTGCCGGCAGCGTGTAGTTCGATGAGCATGTCTTTGAAATCTTGGTTGTACTTCTTAGCCATAACAGATCCTCCAGTAATCATACTTTGATGTCATTATACTAGATTCACT # Right flank : GAATAGCCTACACAAAGAGCGCAGTCAATTGGCTGCGCTTCTTTGCGTGAATGCGCGTCAGGCCTCGTCGCTGTCCTCAAAGAACCCGGACTTTTCGGCGCGCTGCACCCGTTGCACGATCTCGCCGTACCTGGTCAGCAGCAGGCACCAGCGGTGGGGGATGCGCAGGTAGCCGTACGCGAGGCCCGCCAAGCCGCCGGCCAGCGCCGCGTAGGCCGCGCTTTCGTGGCCAAAATTGGCCGCGGTCAGGACGGCGGGCGCGAAGTCGTCGGTCGCCTGCAGGCTGTACCACGCCACGCCCAGCACGTTGCGCGGCGTCGCCGGGCCCGCCGCCAGCGTTTTCGCCTGCGCCGCATCGAGCCCGGCCAAAAGCGCGAAGTCCAGCGCGACGGGCTCGCCCTGGTAGTGGGTCAGCGTGCCGTTGAGCGCGGCGTCCAGCGCCTCGGGCAGCGTCTGGCCGGCCAACAGCCAGGTGACCGCCTGCAGGTACATGGTGGTCG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGATAGATGTCGTATCAATCAGCGCCAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 6885-6190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPUL010000005.1 Lacticaseibacillus absianus strain YH-lac21 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 6884 35 100.0 31 ................................... GAAATCAAGGTCGATAGTACCGACAAGTATA 6818 35 100.0 31 ................................... GAGGCCAGAAGGTCTACGTCACCGAGGTTGT 6752 35 100.0 31 ................................... GACTTGGCGGTCGATGCCAGCGACGATGATT 6686 35 100.0 31 ................................... GGTACTCGACTTAGTCGGTGGACAGGGTGCT 6620 35 100.0 31 ................................... GTAGTTACCAACTGGTGGTCGATGATTGCGT 6554 35 100.0 31 ................................... GCCAACACGTGCCGGGCGAATCGCTAAGTAC 6488 35 100.0 30 ................................... GACGCTTGCTTGTGGTGTCATCAGGATTGC 6423 35 100.0 31 ................................... AGCCGTTCTAGTGAGGGCAGACTATGACGAC 6357 35 100.0 31 ................................... ACCCTGCGCGATTGCGTCGCCCAGTGGCGCG 6291 35 100.0 32 ................................... ACCACGGCCAACCCAAAATACCACTGGCCCGT 6224 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 11 35 100.0 31 GTCTCAGATAGATGTCGTATCAATCAGCGCCAGCA # Left flank : GAGGTGAACCTGGACAAACTTTTTCAGCGGCTGCTGCTCAAGCGACTTAACGCCGCAATGTCGGACCAGGCGAAGGCCCAGCTGATTGATCAGGAGCGGACCCTGCAAAGCGTGGTCGCCGATGCCTTGTTTTCACTGGATCTGCCGCTCGAAATTACGCAGACGGTGACCGTGGAAACGATTCTAAAGTCGGCGGCAATTATGTATAATGAAGCTGTTAGCGGAGATGTCGCCGCTACGCTTGAGGTCCTAATCAAGACGCTGGTCGAGTTGAACGACCAGCGCGTCCTCGCCTTAACCAACGTGAGTCACTATCTGAATCAAGCACAGTGGGAGACTTTCCGCGGGCAGGTCAAGATGTCGAATCTGCCCGTTGCTCTCATTGAATTCACCAATACGCCGCTTGCTGACTTGGGTGAGAACACCTGTCTCATCAACATTGATCGCGACTTCATCGACTCCAGGGAGCTCGATGCTGAGAACTAGATTATAAAAGATCG # Right flank : ACCGTTCGAGATGGATTTAAGTCAAGTTTCGAGACAGTGAATCTATTTGATTTGTGTGTTCCGAGTTTATAGTCAGGCGTTACAATTCAGCGCATGACCATGCCAGTGAGTTATTTCATATTGAACTGGACTCATCATTTCTAGTCCAGAATGGATCCGAGTGCGGTTATACCACTTCTCGATATATTCGAAGATGTTTGTTCGTGCTTGTTCAAAAGTGCGGTAATTCTCTGGGAAAACGTAATGTTCCTCTTTTTTGAATGAGGCATGAAATGACTCGATGATTGCATTATCGTACGGCGTTGCTTTACGACTATACGAGTGCTTAGCGCCGACAGAAATCAGGATTTCTTCGAAGGCAACGCCGGTAAACTGACTGCCAAGATCTGTGTGTACGGTCAATCCTTCAAAGACGTTACGATCAATCAATGCGTTACTAAATGCTTTAATAACTAAGGTTTCGGTCATATCGCGGCCGTACGCAAAACCGACGATACGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGATAGATGTCGTATCAATCAGCGCCAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //