Array 1 3149-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTE01000011.1 Thermincola ferriacetica strain Z-0001 Tfer_ctg11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3148 30 100.0 35 .............................. TCGTGTCCTGCAGTGCCCGCACTGCGGCGTCGGCA 3083 30 100.0 38 .............................. CAGTATTCCCATCATAGTAAAATCTGTCATATCCACTA 3015 30 100.0 35 .............................. GGCGCAAATGTAGATTGGGACGGAAACACAAGGAC 2950 30 100.0 35 .............................. AGATGCTTGAATTTCAAGAACTCCAAGCCATGACC 2885 30 100.0 35 .............................. ACAATGGCAACAGATATTGCCATTGCGCATAACGG 2820 30 100.0 37 .............................. CCATCAGATCCGTTATTTTGGCCCTTATTGTATTTGG 2753 30 100.0 36 .............................. CTAGAGTAGTAAAACAGTTGCGTGAGCAATGTTATG 2687 30 100.0 36 .............................. TTGTTCAAGGGGTTTGTGTCGTAAGAAGGAGATAAA 2621 30 100.0 38 .............................. ATACATTATGATATACAATTCAAATTATTAAATAATTC 2553 30 100.0 35 .............................. CAGTTTTATCAGGCGGATTTCCCTGCCAACCTCAC 2488 30 100.0 39 .............................. TTTCTATTCCTGCTGAAATGGCGTCTGGCGTTGGATATA 2419 30 100.0 35 .............................. CGAGATGCTTCATCACTTTAAAGCTTCGGAATTCA 2354 30 100.0 37 .............................. TTCATTGGCTTCACCGCCTCTATCCTTCCACTCAGCC 2287 30 100.0 37 .............................. ATCTTGACATACAATTCAATATCAACAAATGCCGCTA 2220 30 100.0 37 .............................. ATCGGGTCAAACTGGAATTCGTCGCCGAAGTTATACC 2153 30 100.0 35 .............................. TATGCTTCCATAGATCTAAAATTCATAACCTCACC 2088 30 100.0 39 .............................. CTGGTCACCGGTCCGGGACATCCGCCGGGTCACAGTGTA 2019 30 100.0 37 .............................. TACTAGGTAAGATGGAAAGGAGGCCTTATGAAAAAAT 1952 30 100.0 38 .............................. TAGAGACTGCTGCTTCGTGGCGCAACAGGCCAAAACTG 1884 30 100.0 39 .............................. TCCTGACGTCCTCGAGGACCTGGAAGCATGGTTCGGCGG 1815 30 100.0 38 .............................. TACAAAAATACATGCTCTCCAAGGAAGAAGCGGCGGCG 1747 30 100.0 39 .............................. TAGTTTGTGATAATCACTACCTGCTCTTCCTGCTCAAGC 1678 30 100.0 38 .............................. TTGTTCTAGGGGTTTGAGGCGGAAAAAGGAAATAAAAA 1610 30 100.0 36 .............................. CGAATCATGGAAGCCCCTACTGGATGGGCTGACCAG 1544 30 100.0 36 .............................. ATGAGCGGATACAGGTAGGTGATTCGGGTTGATATT 1478 30 100.0 37 .............................. TTAGCTAATTCTAATAATTCCTTTGTTGTTATCTTTA 1411 30 100.0 36 .............................. TTCCTGAACGTCATAAAGATTGTGCTTGGCATTTAC 1345 30 100.0 38 .............................. TTGACGACCCGATTAAAAACCGCCAGGAGGCGGATTCA 1277 30 100.0 39 .............................. TTCAACCCCTTTCAATGGGCAGTCTGACCGTCTACCTTC 1208 30 96.7 39 .................A............ ATCCTGGCGAAAACCCCCTTGTCAGCCTTCTTCACCTCC 1139 30 96.7 35 .................A............ AGACTGAAAACAGATAGAATGAGGAGTAGTATTAA 1074 30 96.7 36 .................A............ ACTAAAAACCAGACACTAACAGCCAAAGCAATATGA 1008 30 96.7 36 .................A............ GGGCAAAAACTTGATACAGGAATTTATTGACGGCAT 942 30 96.7 38 .................A............ AAGATATTGTTGCAATTGCCGGCATGGTTGGGGGCTGG 874 30 96.7 36 .................A............ ATTTATATAAATTTCCTCCCTCAAATTGCTAACGCA 808 30 96.7 35 .................A............ TTGCGCTACTGGCGCAACAACACGAAAAAACCCTG 743 30 96.7 37 .................A............ CGGATAACCAGGCTGCGGTCCGTATGCTGGAATAGCT 676 30 96.7 36 .................A............ ACAAGTCGCACAACGCGACAGTATAATATAACCAAA 610 30 96.7 38 .................A............ CCGGCAAACCGGTCTACACATAGCATCCTCTCCCTTCA 542 30 96.7 35 .................A............ TCATGAAGCATTCCCCCAATCTTGTAGACTGGCAA 477 30 96.7 37 .................A............ TTAATGCGCTCTATGCCCTGGCCACGGAGGATGGATA 410 30 96.7 36 .................A............ ACATGTTGACAAAATAATAATATAAATCCATAAAGA 344 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 43 30 98.9 37 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : TGTTCGTTATTTTGGTTTATGATGTGAATACCAAGAGGGTCAACAAAGTGCTCAAAAAAGCCAGGAAATACCTGAACTGGGTACAGAATTCGGTTCTGGAAGGTGAAATAAGTGAGGCCAATTACAGGAAACTGAAGATGGAGCTGCAAAATGTGATCAATGAGGAAGAGGACTCCTGCCTTTTTTACACCTTCCGCACGACAAAATATTCGCAGCGGGAATCTCTCGGGATAAAAAAAGGTGGCGATGATGTGATAATTTAGTGGACCGGTTTGACTGGTAGGGTATTCATTGTTACACCCCAAAATTTGTCGTCGACCTCCGGTAGCGCAAAAACCCCGGGGGATCGACGACAAAGCCAAAACAGGGCGCAGGCCTAGAAAAATAAGCAAATACTGCAAAACAGGCCTTTAAAAAAGAGCATTTTTATGGTAAAATGCTGAAAGGTACAGAAATCAGGGAAAACTTGTCGTACCTGATTTTTTGCGCCGCCCGAACGG # Right flank : TAACTAATTTCGGGATAGGGATGTTAGCGGTCAATAAATATACAGCTTTTCGGCCACCAAAAATACAGCAATTGACCACCTTTAAAATTGGAAATTATTTTAAGTGTTCAGTATTGTTTATCGGTGTTTTAACCTGTAGCTATCACCGGTCATATTAAACAGCTCGCATTTATGCATTAACCGGTCCAGCATGGCTGATGTGATGACCGGGTCTCCCAGGAATTCTCCCAATTCCTCAAAGCCTTTGTTGGATGTAATGATGATGGAGGTTTGCTGGTATAGCTTGTTTATCAGGCCAAAAAGCATATTGGCTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 48690-45011 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGTE01000021.1 Thermincola ferriacetica strain Z-0001 Tfer_ctg21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 48689 30 100.0 38 .............................. TAATTTGTATCTGAGTTTGAAAGAAGGTGTAAGGTGGT 48621 30 100.0 38 .............................. AGAAGAAAAATGACAAAGTCAAAGATGTTGTAATGATA 48553 30 100.0 37 .............................. AAAGTGTATCCTGTTTTAAAAAGTGATGATGAGAAGG 48486 30 100.0 38 .............................. AAACAAAAGCAAAAACATAAACCATAAATTTTATAATG 48418 30 100.0 39 .............................. AAAATGACTCAGGATGAATATACATTTCCCCATCTATGT 48349 30 100.0 37 .............................. CTTCACAAAAACTGTTTACTAATCGCAAGTAATCGGC 48282 30 100.0 35 .............................. AGGCAAAAGCGGCCCAGATTTGGCAGGGAATAAAG 48217 30 100.0 37 .............................. GCAACCAAAGAAATAATATATCCAACACCAGAAGCCA 48150 30 100.0 36 .............................. TGCCTCACCTACAAAACGCAAGCCAGCTATTCTATT 48084 30 100.0 35 .............................. CTGATCCAAATGATTTATTAGTAAATTTATATATT 48019 30 100.0 37 .............................. ACTATTTCCGCTACTTCATCCGTAAACCTTATTGACT 47952 30 100.0 37 .............................. CATTTTTATCTAGTAGGTATCTGTCGCGTTTTCTTTA 47885 30 100.0 39 .............................. GCATATAAACCTGTTGGAGGTGTAGGAACAGTTAAGTCA 47816 30 100.0 37 .............................. GGTTTAGGAAATTATGCAATATTTTAATAGATTGTCA 47749 30 100.0 38 .............................. TGATGAATAGGTGTTTGAGTTGTGCAAAAATGGACAGC 47681 30 100.0 38 .............................. ATTTGTCAGACGGCAAGTTATTAAGCGCCACATATGCC 47613 30 100.0 37 .............................. TAAATCTGTTTAGCCGTAAACACTGTAGCCAAAAGTA 47546 30 96.7 37 T............................. GTAATGGAAAACAAGTAAGTTTAATGTTGAAGGTACA 47479 30 100.0 38 .............................. ACTGTAATTGGTCTTTTAGCATCAGTGTCTTCGGCTTT 47411 30 100.0 38 .............................. TAACGGCAAAGTGACAATTCAATATTCCAATGTGCCTG 47343 30 100.0 35 .............................. CCAAACAGAACCAGAACAAATTAAAAAGAATATAG 47278 30 100.0 37 .............................. AAGTTGGGTTCCAAAGGCGAAGCGGTCAAAGAGTTGC 47211 30 100.0 38 .............................. TTTTCTCTGCTGAGTTATCTCAGACAACAAGGCCTCGG 47143 30 100.0 36 .............................. CCGATTTGAAGGAACAACTGGACGAAGCCAAAGAGC 47077 30 100.0 38 .............................. CCTTTTTGCCGGAGTAGACTGCCCTTGTCAATTGTCTC 47009 30 100.0 37 .............................. TGATGAAAGGAAACTCGAGATAGTAGAACCTAAAGTT 46942 30 100.0 37 .............................. CAAATCATGAAATGCGCTGTGAAACTTAACGTAGGGA 46875 30 100.0 37 .............................. AACAAAACTGCTCAAATGCTTGGTGTTGGTGGTTTTG 46808 30 100.0 37 .............................. ACTAATTTGGGCCGTAATCTGCAGGCCAAAGCTCAGA 46741 30 100.0 35 .............................. GCCCATTAAGTTGTTAATCTGTTTTTGTACTCCGA 46676 30 100.0 37 .............................. AATGGTCCGGTTTATTTTATCTGCAACCTCTTTATCC 46609 30 100.0 38 .............................. CAATTTTTTGATTTTGCATTTTATCATCCTCCTTGTGT 46541 30 100.0 37 .............................. AAATGAGCAGAAACATGTTTCCCACTCGCTTTATGCA 46474 30 100.0 36 .............................. TTGGCAAACCAGTATGGTCCAGTTATGGCACGATAA 46408 30 100.0 36 .............................. AGCAGGGAAGCTGACCGTTCTTGTTGGTGCTAGTCG 46342 30 100.0 37 .............................. TCAATTGTTTTGCCATTGTTATTCCCCCTCTTGGTCC 46275 30 100.0 38 .............................. CTTCCTCTTTGTCCTCTCTCGGACAACTTTCTTCTTGT 46207 30 100.0 37 .............................. ATAAGTAAAGCATTAGAAATTTGGCATCATTTGATAA 46140 30 100.0 36 .............................. TTCCACCGGCAACTGTTTCCGTACCAAAGAAGAAGC 46074 30 100.0 38 .............................. ACAGAAATTCTCACAAGGAAACAAGAAGAGAATATCCT 46006 30 100.0 40 .............................. CACTAACTGGGCCCCGTCGACATTCCATTTTTTGTCCATG 45936 30 100.0 40 .............................. AGTCAATCACGAACAACTCAGCCAGATAGATTTTTACTCC 45866 30 100.0 38 .............................. ACACCGCCTATTACGAAATTTCCGCCGATAGCCCCGCG 45798 30 100.0 36 .............................. CCGAGATAGAAAAAAAAAGACCCGCTATTTCAGCGA 45732 30 100.0 38 .............................. CTGAATTTTCTCTCGCACACGAAATGGCGCATGTACTT 45664 30 100.0 35 .............................. GACAATAAAAAGTTTATTCCACTTCCCAAAAAGGA 45599 30 100.0 39 .............................. AGGGACAAGCTAGCCGAATGTGGGAAATATGTTATTTCG 45530 30 96.7 38 .................A............ ACTTCATCTACTTTTGTCTCAACAATACTCATGCGTTC 45462 30 96.7 125 .................A............ AGATGACTGTAAATGTCAAAAACCATATCCCATCGTCCTGTTGACATATGTAATGGTATTTGATGAAAATAAAAACCATTTGTTTGGGATATGCCCTCTCTGCGGAACGACTCATACTACTAAAG 45307 30 80.0 236 ..C..A...G.......A...A.......A TCAAAAGGGGTTGAGGAAATGAATGACGATGTAAAGGAAAGGCTCATGAAAACCAAAAACACAGAAGAATTTTGGCAGATTATAAAAGAAGAATACCCGGGAGACAAATTGTCGATGTATTTTTTATGGGAGGAACTGGGCAAGGATGTATTTGGACATCTTACTAAGTTGATATTCCGTTATAACCCGGAATGAAGTTCATCCAATTTATCAGAAGTAGCTAGGGCAGGATTTGG G [45291] 45040 30 80.0 0 ...........GT..GC.........T..T | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================================ ================== 51 30 99.0 43 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : CTTGAATAAAAATCCTGCCTCGCTCCAATAAGTTAATAATAATAAATATTTAAGCGTAATTTTTCACGGCGAACAAGGCGGTCAAAAAAACCCTTACCATCCCCAAATGGTTAAATGATTTAGCCGATATACTTGTACCCGGCATGGGGGGATAACAAGCTCAAGACTTCTACTAAACACCGGGATACTGGCAGGGAAGTTTCATAAAGACGGTTAATCAGACTGGAACTGTGTAAACTGGAAAAGTACCAGATGGGCGTAAGCCCTGAATTATTAACTTCAAAGCCGAAACCGGTCAGACGGAAAATTTGTCGTCGACCTCCGGTAGCGCAAAAACCCCGGGGGATCGACGACAAAGCCAAAACAGGGCGCAGGCCTAGAAAAATAAGAAAATACTGCAAAACAGGCCTTTAAAAAAGAGCATTTTTATGGTAAAATGCTGAAAGGTACAGAAAACCAAAAAGCCTTGCTGTACCTGATTTTTTGCGCCGCCCGAACGG # Right flank : ATTGCAGGGAACGCCTCACATATAAGACGTTCGGGGACATCAATCAAATGGTTGTAGGTCATAAATGATTCAGCCGAAAAAATTGTCGCCCCGTCTACAAGGCGGGGCTTTTATGGTGCGAAAGGTTTATTTTTCTTACCCGGGCCAAAAGTGCCCTAAATGCCGGAAAACCGGTGACAGGATCAAGAACGGTATCATCGGTTAAAAGGTTTACATTGGCCTCGGCCCAGCCATGGGGAACATAGATCACTTGAGGATGTAGCTCCTCTGTTAACTTTGCCTTGAGCTCAATTCTTCCTCTCAGGGACTCAACGGCAATCAACTCTCCGTCTTTTATCTTTAGCTTTTCGGCTGTTTTTCTGTTCATTTCAACTAAGGGCTCATACGCCCGTTTACGGAATGAAGGCAGGTTACGGTAGCGGGAATGGATATAACTGAGAGCCCTCGCCCCGGTGCTGAGAATAAACGGATAATCTCTGGCAATTTCGGGCGTGGACCAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //