Array 1 46166-44744 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDP01000008.1 Neisseria meningitidis strain M38773 M38773_S13_cleaned_ctg_9636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46165 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 46099 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 46033 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 45967 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 45901 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 45835 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 45769 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 45703 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 45637 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 45571 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 45505 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 45439 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 45373 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 45307 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 45241 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 45175 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 45109 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 45043 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 44977 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 44911 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 44845 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 44779 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //