Array 1 81332-81954 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024302.1 Thermus thermophilus strain HB5002 plasmid pHB5002b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 81332 36 97.3 37 ..-.................................. AGGTGCCGTGAAGGACCTGGTTCTGCAACCCACGATT 81405 37 100.0 37 ..................................... GGCGGGCGCCCGTGCCGTAGGGGTTGCCCAGCCAGGA 81479 37 100.0 36 ..................................... GTCCAGGGTGGCCCGCACGGGCCTCCCCACCCGGAT 81552 37 100.0 35 ..................................... CCCGGGCTCTGGATCTACGCCGCCCTGCAGGAAGT 81624 37 100.0 37 ..................................... TCGGTGAGCTGGACCGCGCCGTCGTTGGTGAGGCTGA 81698 37 100.0 37 ..................................... GCGTAGTTGAGGAGAGCGCTGGTCTCGATCTGCCCCA 81772 37 100.0 37 ..................................... TGTCGGCGTCCTTTAGCTCCTCAACGAGCTGGGCGCC 81846 37 100.0 35 ..................................... TTGTATCCACCCCTGGTAGGAGGAGCCTAGCTCTA 81918 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 99.7 36 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Left flank : CGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCGGGGGGAGGCCTCCTCCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGAGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTAACGTGTATGGGTCCTGGGTCCTCAGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTGGCCTGCCTTCCTGG # Right flank : CTCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGGAAACCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACGTAGACGGGGTAGGGGTCCTTCTGCCGCTTGGGGTGGCCCAGGCGGGGCGACCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGGAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCTGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCGGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAGGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 890239-890423 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024301.1 Thermus thermophilus strain HB5002 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 890239 36 100.0 40 .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 890315 36 100.0 37 .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG 890388 36 88.9 0 ...............................A.TGT | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 96.3 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAGGAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCGCCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTCCGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCCTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : TCTTGCCCATCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCCCTGGTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1054394-1054753 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024301.1 Thermus thermophilus strain HB5002 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1054394 30 100.0 32 .............................. CCGGCTCGTCCCTAACTGGAAGTTGGGATCCA 1054456 30 100.0 38 .............................. CAAAGAATCATCATCTTGCAACTAACCCCCTTTCTTCA 1054524 30 100.0 36 .............................. GTGTAGAGATGATCTTCTCGGCAGGTGTTCCACTCT 1054590 30 100.0 39 .............................. TGGCGTTCAACGCGTACCAGCTTGCCCAGATTTCGTCTC 1054659 30 100.0 35 .............................. AAGTCCCGGCGGTGGTGGCCCGCCTGGACAACATG 1054724 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.9 36 CTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : CTCTTTATGTGGGTCCGCCTGGTGGAGCTGGGGGGCAAGTTGCTCGTCCTCAACCTGGCTCCCCATCACGAGACCGCGGTGCGCCTTCTGGGGGCCGGGCGATATTACCTGCTGGAGTGAAGGGGGTGCGGAATGTGGGCTTTCTGTCCATTGTGTCCACGACAGTTATGAAGTAATCCCAAATCACGTGCCTTCCTCCCGCTGGAGTAGTCGTTTAAGAATTTGCTCCCCTTTTAGGAATTCGGACTCTGGGTTGAAAGATTCCCACACCCCGTCTGGCTGCCTGCCGTTTCCGCCATCTTTCAGGGTTTTGAGTTTGTTGAGAATCTGTGAGAAATTCTGTTCGTTTTTCACAAAGCCAAATGTTCGTCTTGCGTTTTTAGGTTCTTTAAAGCTGAACACTTTTTTGCTCTCTGGCTTTTCCTCGTGTCCCCGAGGGCGTCTTCCAGCCAGCCAGGAATCACCCTGTGAGGATTGGTTTTTTTTAGGTTCCGGACGAT # Right flank : GAAGTGCTGCCCCGAATTTGGACCACCCCAAGAGAGAGGCCAAGGGGTGTAGTCTGAAGGGGTAGCGAGATGCGCAGGTGGTCAGCGAAGGAAAAGGCAAAAATTGTGTTGGAGGTCTTGTCGGGTCAAAGGACCGTGGCCGAAGCCTGCCGGGCTTATGGGGTGGCGGAGTCCCTCCTTTACCGCTGGCAGCGGGAGTTCCTGGAGAACGCCCACGCCGCTTTCACCTCCGGCTGCGCGGAGCAGGAGGCCCGCATCCGCGAGCTGGAACGCTTGGTCGGCCAGATGGCCCTGGAGCTGGAGGTCCTAAAAAAAGCCTCGGGGCTCTACCGGCAAAGGAAAGGCGGGAGCTGGTGAAGGCCCTCAAGGGAGCCTACCCCCTCCGCCTGCTTTCCCGGGTCCTCGGGGTGCCCCGGAGCACCCTCTACTACCGGCCCCAGGACCCCCCTCCCGAGGAGGCGGCCCTCCGGGAACGCTTGCGGGCCCTGGCGGCGGCCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1076376-1075971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024301.1 Thermus thermophilus strain HB5002 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1076375 36 100.0 38 .................................... AAGAAACCGGCGGAACAGGTCCACCCCCTCCTCCAGGG 1076301 36 100.0 35 .................................... GCCCTGGCCATTGTCCTGAGCTACCTGGGGCATCT 1076230 36 100.0 39 .................................... CACTTTTGCCTCCTCATGGCCTGCTCGTAGGCTCTACGC 1076155 36 100.0 40 .................................... GTGGGCTATGGATCCTCCCCCGACTACGGCGTGGCCGTGG 1076079 36 100.0 37 .................................... ACCTACGTTCTCGCCATGCTCACGGGGCTCGCCGTCC 1076006 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 99.5 38 GTTGCAAACCTCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : CCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGCTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCAGGAAAGGGCTTTTTCCCCGGTTTCACGGGTGAGGCGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCCAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCTCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACAGCCAAAAGCGCCTGCTTTTTTCTCTTCCCTCGGGAGAGCAAACGGTGGTAGAAGGCCCGCATCTCTGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGGAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGCCGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 4 1087245-1088155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024301.1 Thermus thermophilus strain HB5002 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1087245 36 100.0 36 .................................... GTAGAGCTCGTCCTCGTACAGCCTCATAGCACCTCC 1087317 36 100.0 39 .................................... CCAGACGTCCAGCCGGGGCCAGAGGAGGCCGTCCTCTTC 1087392 36 100.0 36 .................................... ATTCGGGACCTCCGGGGAGTGATGAGGAGGTGATGG 1087464 36 100.0 35 .................................... CCCCATGTCCCAGACGATTTCCAGGGCCCTGGAGC 1087535 36 100.0 38 .................................... CGCTTTACCCAGGACGCGGCCCGGGTGGGGGTGGCCTT 1087609 36 100.0 37 .................................... CTCCTTCACGACTCTAGGGGTCAAGAGGCTCCCATAC 1087682 36 100.0 38 .................................... GAGGTAGATGCCAATCTCCTCCAGGGGCGCGGTGGGGT 1087756 36 100.0 37 .................................... AGCTGGTCCCCCACGCGCCCGATGTAGCGCTTGAGCC 1087829 36 100.0 37 .................................... GCGGCCATTGACGAGCGTGGCGTGGAGTCCATCCCCT 1087902 36 100.0 38 .................................... AATCCCAAGGCGGAGATGGCCTATCGCCTGGTCCGGGC 1087976 36 100.0 35 .................................... CTTAGTGGGGAGAGCCCGGAGCATGGCCTGCAGGA 1088047 36 100.0 37 .................................... CCATAACACGGCCATATCGTCGGTCAAGGTCTTCCAG 1088120 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.8 37 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAACAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTCTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGGAGCCCCTTCACGCACGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 5 1664086-1664570 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024301.1 Thermus thermophilus strain HB5002 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1664086 36 100.0 37 .................................... TCGTAGACAAAGTAGGCAACGGAGCCGCCCAAGTCCC 1664159 36 100.0 37 .................................... CCCACGTCCACTCCATCCGCCGAGTCCACCACCACCA 1664232 36 100.0 39 .................................... TCTCCCTGGGGCGGATGCGGTGCCCCCTCCGGTCTCCCA 1664307 36 100.0 41 .................................... CTCAAGCGCCATGAACCGCTCCCCCAGGTTGTATTTGACGA 1664384 36 100.0 40 .................................... ACGGAGCCGCCAAAGCGTCCAGCACCTCACGCAAACGCTC 1664460 36 100.0 39 .................................... CGCCACCGGAGAGCGGTCCCGGATCTCCCACGAAGCCCC 1664535 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.2 39 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : ACCTATCTGCGCGAAACTGATCTTTCACGAAGGAAGAAGCCCCTGAGGGCTTTTGAAGCCGCCATAGGGACGGGGTCACCTGGTGGGGCAAAGAAGGGTTGCGGGGCGAGGTGAGGGCAAGCCCCTTCGCTTTCATAGGCGCCAGCAACTACAGCTATTCGCTAAAATGCGGGGCGAAGGCACGCTAATCGCTTTCTCATTTACTAGTTTCCTTTTTCAAGGTCTTTTCCGCTCCAAAATAAACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGACCTTGAAAGCCAGTTTTCCCCTTGCCGAAGGCGAATATGCGCTTTCCCCTTCTCATCGCCCCTTCCTCCTGTGGCTTTTCATCGGCACAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGG # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGGAGCCCCTTCACGCACGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //