Array 1 20321-21679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTUW01000039.1 Enterococcus faecium strain CVM N60001F N60001F_S28_L001_R1_001_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20321 36 100.0 30 .................................... CAAGAGATTTAGTGACGAAATGACAATTTT 20387 36 100.0 30 .................................... TTTAAAAATCGCTGTATCCCTTGATACTCT 20453 36 100.0 30 .................................... CTTGCCTTGTGCTAAGCATACCTCACATAG 20519 36 100.0 30 .................................... TTGAATATTATCCATGATTCTTCCCCAGTC 20585 36 100.0 30 .................................... CACTCCTATTCATTTATCACCTCGTTTCCT 20651 36 100.0 30 .................................... ACCAACCAACAATGCCGTCCCACCAATTAC 20717 36 100.0 30 .................................... AATACCGCCAGCTGTCGCAGTTACTAACGC 20783 36 100.0 30 .................................... GTCAGACCTGTTGTATACTCAGCTTCTTCA 20849 36 100.0 30 .................................... CTGTTGCTTTGTCTCACCACTAAATTTTTG 20915 36 100.0 30 .................................... GAACAGCATTGCGGATAAAGCTAATGGCGA 20981 36 100.0 30 .................................... TTCCAATGTTTCTCTGGTTACTTTATCTGT 21047 36 100.0 30 .................................... ATACCAGCTTTATAAATGGCTTGATCCACT 21113 36 100.0 30 .................................... TAATGAGGCTGACGTAAACAAATTATTAGA 21179 36 100.0 30 .................................... TGCAATGTTACACGAACTAAAAGAAGAAAC 21245 36 100.0 30 .................................... GTTTGATGATACTATTGTACGTGACAGTGA 21311 36 100.0 30 .................................... TTTTGACGAATCAACAACCGCTCTAGTTTT 21377 36 100.0 30 .................................... AATAGTTTTCGGTGGAGTTCGACGCTTGGC 21443 36 100.0 30 .................................... CGATAAAATCAAGTTAAATTTACACGTTTT 21509 36 100.0 30 .................................... AGAAATTTATTGGAAAAGTGTTCTAAGGTT 21575 36 100.0 30 .................................... CCATTTCCTACGAAGCTTTTTTCTAGCTTC 21641 36 91.7 0 .........................A....T....A | AC,G [21669,21675] ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Left flank : GCCAGCTCAATGAAAAAGTAGAAGTGAAATCAATGATTGATAAACTGACAGCGACAATCAGTGAGCTGATTGGGTACGAGTTGTTGGATCACGAACTCGATTTAGAAGGAGACGAGATCACGGTCTTGGAATTATTCAAAGCATTGGGTATCAAGATCGAGACAAGAAGTGATACTATTTTTGAGAAATTACTTGAGTTGCTTCAGGTTTATAAATACTTGTCTAAGAAAAAATTATTGGTTTTGATCAATGTGTGTTCCTATCTCACGGAAGAAGAAATAAGCGAAGTGCAAGATTATATTTCGTTATATCATATGGAAGTGCTATTTGTAGAGCCGCGTTCGATCAAAGGGATAAAACAATTTGTCTTGGATAAAGACTATTTCTTGAACTTGGAAAACATGGTATAATGGTAAAAAAGAGAAGCGTTCAAAGCTGAAGTTTTGCTATGAACGAGTAGCGTGATTATGAAACATTGACGGAAAAATTTTTTCTGCGAG # Right flank : AACAGCCTTGCACTTATCGAAAGAGGATTAGTGTCAAGGGTGTTTTTCATATGAGTGGACGGAATTATCTGTTTTCTTTTACAATTGATAATAGATACTTTGCTGTATAGTCAGTAGCTGATATAAAAGTATCGGCTCTTAAATGGAAAAAAGATAGGTGGCGACGCAATGTTTAACACACAATTGATCGGTTATTTAGAATGGATCATTGCTATTTTAAATATTTGTTCTATCGGTATCTTAATTGCTGGGATCGTTCTTGTTCTATTCAAACTTTTTGATTGGTCTCATGTCAAGAAAAACTATGCAGAACGTAATGCTCGTAATGCAGATACAAGAAAACTGTTAGCAAGTTATATTTTGTTAAGCTTGGAAGTACTAGTCGTTGCTGATATCATCGAGTCAGTTATCAAGCCGACTTGGACAGATATTTTGAAGCTTGCACTTATTATTATCATTCGAACAGTCATTTCTTATTTCTTGAATCAGGAAATAGAAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //