Array 1 28789-27294 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDW02000036.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0031 NODE_36_length_51356_cov_18.416776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28788 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 28727 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 28665 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 28604 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 28543 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 28482 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 28421 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 28360 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 28299 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 28238 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 28177 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 28116 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 28055 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 27994 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 27933 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 27872 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 27811 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 27750 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 27689 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 27628 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 27567 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 27506 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 27445 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 27384 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 27323 29 93.1 0 A...........T................ | A [27296] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46067-45429 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDDW02000036.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0031 NODE_36_length_51356_cov_18.416776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46066 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 46005 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 45944 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 45883 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 45822 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 45761 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 45700 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 45639 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 45578 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 45517 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 45456 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //