Array 1 3742464-3740800 **** Predicted by CRISPRDetect 2.4 *** >NC_017623.1 Salmonella enterica subsp. enterica serovar Heidelberg str. B182, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3742463 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3742402 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3742341 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3742280 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3742213 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3742152 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3742091 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3742030 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3741969 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3741908 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3741847 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3741786 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3741725 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3741664 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3741603 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3741542 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3741481 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3741420 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3741359 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3741256 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3741195 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3741134 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3741073 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3741012 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3740951 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3740890 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3740829 29 96.6 0 A............................ | A [3740802] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3759848-3758722 **** Predicted by CRISPRDetect 2.4 *** >NC_017623.1 Salmonella enterica subsp. enterica serovar Heidelberg str. B182, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3759847 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3759786 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3759725 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3759664 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3759603 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3759542 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3759481 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3759420 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3759359 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3759298 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3759237 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3759176 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3759115 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3759054 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3758993 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3758932 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3758871 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3758810 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3758749 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //