Array 1 97789-99769 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYD01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3717 BCW_7510_1__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97789 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97850 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97911 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 97972 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98033 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98094 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98155 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98216 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98277 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98338 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98399 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98460 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98521 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98582 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98643 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98704 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98765 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98826 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98887 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98948 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99009 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99070 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99131 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99192 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99254 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99315 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99376 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99437 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99498 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99559 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99620 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99681 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99742 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115902-117378 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYD01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM3717 BCW_7510_1__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 115902 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 115963 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116024 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116085 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116147 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116208 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116269 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116330 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116391 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116452 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116513 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116574 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116635 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116696 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116757 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116818 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116880 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116983 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117044 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117105 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117166 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117227 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117288 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117349 29 96.6 0 A............................ | A [117375] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //