Array 1 36558-37365 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBEJ01000027.1 Pseudomonas aeruginosa strain HIAE_PA13 27c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36558 28 100.0 32 ............................ ACCACGGGCTGATCATCCAGAGTGTCTAGCAC 36618 28 100.0 32 ............................ ATGCGGCCAATGTGCGCTGGCACTCCGTATTG 36678 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36738 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36798 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36858 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 36918 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 36978 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37038 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37098 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37158 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37218 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37278 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37338 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48318-45890 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBEJ01000027.1 Pseudomonas aeruginosa strain HIAE_PA13 27c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48317 28 100.0 32 ............................ TACAAGCATGAGGGTGAGGTAGAGGCATGCGC 48257 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 48197 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48137 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48077 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48017 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47957 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47897 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47837 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47777 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47717 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47657 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47597 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47537 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47477 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47417 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47357 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47297 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47237 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47177 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47117 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47057 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 46997 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 46937 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 46877 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46817 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46757 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46697 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46637 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46577 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46517 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46457 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46397 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46337 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46277 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46217 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46157 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46097 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46037 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 45977 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 45917 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //