Array 1 67274-65353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYS010000002.1 Salmonella enterica subsp. enterica serovar Rissen strain S102 NODE_2_length_386902_cov_319.759744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67273 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 67212 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 67151 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 67090 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 67029 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 66968 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 66907 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 66846 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 66785 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 66724 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 66663 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 66602 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 66541 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 66480 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 66419 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 66358 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 66297 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 66236 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 66175 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 66114 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 66053 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 65992 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 65931 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 65870 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 65809 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 65748 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 65687 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 65626 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 65565 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 65504 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 65443 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 65382 29 93.1 0 A...........T................ | A [65355] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84767-83885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGYS010000002.1 Salmonella enterica subsp. enterica serovar Rissen strain S102 NODE_2_length_386902_cov_319.759744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84766 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 84705 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 84644 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 84583 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 84522 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 84461 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 84400 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 84339 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 84278 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 84217 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 84156 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 84095 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 84034 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 83973 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 83912 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //