Array 1 14-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPZ01000009.1 Salmonella enterica strain BCW_4847 NODE_9_length_179555_cov_4.00247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 75 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 136 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 197 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 320 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 381 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 442 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 503 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 564 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 625 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 686 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 747 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCGCGCTTAATA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16907-17711 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPZ01000009.1 Salmonella enterica strain BCW_4847 NODE_9_length_179555_cov_4.00247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16907 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 16968 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 17029 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17090 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17151 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17213 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 17274 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [17316] 17316 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17377 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17438 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17499 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17560 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17621 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17682 29 96.6 0 A............................ | A [17708] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98009-99318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPZ01000019.1 Salmonella enterica strain BCW_4847 NODE_19_length_99318_cov_3.94188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98009 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98070 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98131 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98192 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98253 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98314 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98375 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98436 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98497 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98558 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98619 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98680 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98741 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98802 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98863 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98924 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98985 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99046 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99107 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99168 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99229 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99290 29 93.1 0 A............T............... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //