Array 1 42895-44204 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUD01000006.1 Escherichia coli strain MOD1-EC5046 MOD1-EC5046_6_length_196591_cov_67.9551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42895 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 42956 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 43017 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 43078 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43139 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43200 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43261 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43322 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43383 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43444 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43505 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43566 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43627 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43688 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43749 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 43810 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 43871 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 43932 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43993 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44054 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44115 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44176 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69904-70724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUD01000006.1 Escherichia coli strain MOD1-EC5046 MOD1-EC5046_6_length_196591_cov_67.9551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69904 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 69965 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 70026 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 70087 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 70148 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 70209 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 70270 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 70331 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 70392 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 70452 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 70513 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 70574 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 70635 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 70696 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //