Array 1 12627-11255 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZH01000001.1 Salmonella enterica subsp. enterica serovar Tarshyne strain BCW_2789 NODE_1_length_446688_cov_5.05969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12626 29 100.0 32 ............................. ATATCTGTACGCCCGGACATCAAATCATTGAG 12565 29 100.0 32 ............................. GAAACGGCAGTATTGCCACATGGAAACGGCAA 12504 29 100.0 32 ............................. CCACGAGTTCGACCAGAAGAGGGATATGGCCA 12443 29 100.0 32 ............................. CGGTCCTAACCCATACGGCAACGTTAATTGAT 12382 29 100.0 32 ............................. ATTGTTTCCGTGGGCAGGCACTGAGCGAGCCA 12321 29 100.0 32 ............................. GAATTATTTATAAAATACACTCTAATATGTTT 12260 29 100.0 32 ............................. TCGCGTTGATAGTTGGCTGCGCGGTAAAGCAG 12199 29 100.0 32 ............................. TTGCAGTTGCGAATACTGATACGAGATTAAAC 12138 29 100.0 32 ............................. ATTTTGGGGGCAAATTTGGGGGCAAAAATGCA 12077 29 100.0 32 ............................. GGCAGATTTACGACAATAACCCGGCAGCGGTG 12016 29 100.0 32 ............................. CACATGCAGAACGTCGCATATAATAGCCAAAA 11955 29 100.0 32 ............................. CTTCCGGGGTTTTTATTCGAATACGCGCCCGC 11894 29 100.0 32 ............................. GCCTGCCTGTAATCGATGATCACCAGTGCCGA 11833 29 100.0 32 ............................. AACGTTTATACCGCGCCAACTATCCACCACAT 11772 29 100.0 32 ............................. CGTGCGCGCCGAGTGGGCTGGTCGGGCAGATC 11711 29 100.0 32 ............................. GCGGCGAGACCACGAAAGAGGGAATATCGACA 11650 29 100.0 32 ............................. TAATTGACATACGCCACCCAAATATTAACTAA 11589 29 100.0 32 ............................. GCCGGGTACAATGGATTTTCGATAACGCCGCA 11528 29 100.0 32 ............................. TCGATCTACTTCTGCGTATCGCAAACCGCGCT 11467 29 100.0 32 ............................. GTGATGAAGGGGACGCCTGTAGCGCACTACTA 11406 29 100.0 32 ............................. GGCGACGGCACAAAACGTTCAAAACTCATAAC 11345 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11284 29 93.1 0 A...........T................ | A [11257] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGCCCCGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30073-28885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZH01000001.1 Salmonella enterica subsp. enterica serovar Tarshyne strain BCW_2789 NODE_1_length_446688_cov_5.05969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30072 29 100.0 32 ............................. GCTGTATGCTCCAGTAGCGGTTGCATATTTAG 30011 29 100.0 32 ............................. GGGTATCGCGTCTGTTTTGAGTGCTGTGTTGC 29950 29 100.0 32 ............................. CATACCACGTTACAGTCCCGCTGACGCCTCCG 29889 29 100.0 32 ............................. CCCTATGACGTTCTGCTGCGCAAGGTACTGAA 29828 29 100.0 33 ............................. ATAATGATTGCGACAATAGCCAGCACAGCGAGC 29766 29 100.0 32 ............................. GTTATCGGCAGTACCGGCACAGGTAAATCAAC 29705 29 100.0 32 ............................. TACAGTGAAATACCCCACCAACCCAGCAATGG 29644 29 100.0 32 ............................. CGGTCGGACAAAGCCGTCACCTTTGACCAGCA 29583 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 29522 29 100.0 32 ............................. ACTAATTTCAGAAAATAAATTTTCGTACTGCT 29461 29 100.0 32 ............................. TTTTCATACGCCTCGTAATTGTTTGCGGGGAT 29400 29 100.0 32 ............................. CCAGTAGAGATGCCCACGCATATCTGTAAGCA 29339 29 100.0 32 ............................. ATTTTCGGCGTTCCTGTAATTCTGCCCGCTCA 29278 29 100.0 32 ............................. CGCCTTGTAACTGGCTTTGATGAGTGCTTGGA 29217 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 29156 29 100.0 32 ............................. GCGTTGGCGGAGACGGATTTGCAGCCCGGCAG 29095 29 100.0 32 ............................. AGGAAAAGGCCTGGTTCTCTGAATCTGCAACG 29034 29 100.0 32 ............................. TCCGGGTTAATCTCTTGCGGCATCATGTATTC 28973 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 28912 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATAAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //