Array 1 9655-11168 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIB01000028.1 Natronococcus amylolyticus DSM 10524 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================= ================== 9655 30 100.0 35 .............................. GCAGCGATTCGAAGACAGTCGGTGAGTCCTCGCCG 9720 30 100.0 37 .............................. TGATGATCACATAAGCGCCGTGCTCTTCGATGTACTC 9787 30 100.0 35 .............................. ATCCAACACTACGGCGCCCTGCCGGGGAGTGACCG 9852 30 100.0 35 .............................. TCGTGTCCTCGCGATCAAGCGCAGTGAGATGACGT 9917 30 100.0 36 .............................. AAGTCGGCCAGCGAAACGTCGTCCACCCCGAAGAGG 9983 30 96.7 36 ..............G............... AAGTCGGCCAGCGAAACGTCGTCCACCCCGAAGAGG 10049 30 96.7 37 ..............G............... AAACACCGGAAGCTACTGAAAGACCTCTACGACCCGT 10116 30 100.0 36 .............................. AGTTTGAACGCGACCTTCAGGCAGCGTTCCTTGAGC 10182 30 100.0 36 .............................. TCGAACGTCTCATGCACCTCGATACGGGCGCCGCTC 10248 30 100.0 37 .............................. TTTGATATGGATGGTATCACAGAGCGATTTGGAGAAG 10315 30 100.0 37 .............................. TACTCTTCAGGTGGCTTCGACAGTCCACTGCGCTCAC 10382 30 100.0 37 .............................. TAATCACGGAGTCGGAACTCGACGATCGGCACGGCGT 10449 30 100.0 35 .............................. GATGCAGCATCGCCAGTGTTCTCGACGATGGCCTC 10514 30 96.7 36 ..............G............... TTGACCCACGCCGCCACTCGAGAGTCGTACTCGCCG 10580 30 96.7 36 ..............G............... ATGTCACGCAGCGACTTGAACTCGTATAGGTGTGCG 10646 30 96.7 35 ..............G............... GAACTCGACTGTGACGAAATCATCAACGACCGCTA 10711 30 96.7 34 ..............G............... ACTTCGTAGTCCTCCCAGACTCCTACAACGACGC 10775 30 96.7 35 ..............G............... GTGTTATCCTCTTGGTCTTTCACAGAAACCGTCGG 10840 30 100.0 37 .............................. AGATGGACTTCGAGGAGTAACCGACTCATAAAGTGCA 10907 30 86.7 201 A.......T..........T....C..... ATGGGAGTCGCTCTTCTGAAGTAGATTGTTGGTAGCGATGTGGAACCAGTCCGGGGAATGAAAGAGTGGCCGCTCAGCAGTGAATACGATGTCCTGGCTGCTCCACGACCATGGTCACTGTAATCGGGAAATCGCAAGAGAGCTGTCCACCAACAATGTGCTTCTCAAGAGCGTATGGGCGTTTGGGATGTATTCGAAGAG T [10934] 11139 30 76.7 0 A....G......T.C..A..A........A | ========== ====== ====== ====== ============================== ========================================================================================================================================================================================================= ================== 21 30 97.2 44 GTCGTAATCGGACCTACGACGGATTGAAAG # Left flank : ATAGATAGTGAAGTAACTGAAGACGGTCTGCCTCTTGATACGTTGAAGACCGCTTTATTTCGCTAATTTCTATTGTCTGTTCATCTGGGTGTCGTATAAGATCGAATTTACTTGTGCCGACTGCAACATTGTCGTCTCGGCTGTACGCCGTTTCTGAGAGGATCTTTCCGAGTTTGACAAATTCATTTTCTTGTGCGTAGAGGATTCGATGATGATGATACCAAAGTTTTGTCGAACAGATTCCATAGTAATGATAGTGCTCTCCGGTAAGTGAGCGAGGCATAGCTCTATGCCAACGATCGAAGTATTAGTTATTCGGGTGCTGAGAGGGGGTTTATATTAGATAGCAGAATAGAGAGGTTGAACATTGAACCCAGTTTTTGTCGTGGTTACTAGATTTGGCGGTAGTCGATGGGAAACGTGCCTGGTACAGCGTAGACAGGGTGAGTCAGCGATTTCACGAATATTTATCCCTGTACGAGGTGTTTGGATAGATGTTG # Right flank : ATTCACGTTCAATACCTTACTGGCGAACTCAAGTAGGAGTCGTAATCGGGCCTAAGACGAACCTATCATAAATATAATATTATCTAACACCGCCTGTAAAAATCCCAAATTATATTCAGTAGTCCCGCTTTGAGGGGTCCGTCGTCGGGTCTTCCCGCGGATTCTGTATACCTTCCTCATATGAGTAGTCTAAATCGACTTCCGAAAGGAAAACTCGAGGGCAGTCGGGAAACACTTGAGACATACGACATGGAATGTCTTTTTCTAGAATCCAATATGCTGGAATGTCAATACTGTACTCGTCGATGGCCTCGCATAATGCCTCGTGGCACGAGGTATAATGGTCTACCTCTAGACCACATGTTCCGGTACATTCGTGAGCATCGAAAGTCTGCCAGAGTTCACTAAACGGGACCGATACACCCAAATTGTCATGTAGATCATACAAGCATGCGACAACTGAAAGTCGGTTATGTGTCTGGCTTCGAAACTCCATTCCC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.80, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATCGGACCTACGACGGATTGAAAG # Alternate repeat : GTCGTAATCGGACCGACGACGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 18620-18263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIB01000028.1 Natronococcus amylolyticus DSM 10524 contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18619 30 100.0 37 .............................. ATGCGAAACTGCGTGTTCCACTGCAAGTCTGGAAACT 18552 30 100.0 35 .............................. TAGAACTCTTTGAGGTCTTGTTCGGTCGCCCGCTC 18487 30 96.7 35 ...............C.............. ATGGAAAATCAGATGTGGGAAAGAGAAGGTTTCGA 18422 30 96.7 37 ......T....................... TTATCTCGGGCAACAGCCTTCGGGGCCAACTCCGCGA 18355 30 80.0 33 ............T..CA..T....C....C TGAGATCCCATTTCTCTTGTTCTCTGAGCCGCA 18292 30 83.3 0 ........T.......G......AAA.... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 92.8 36 GTCGTAATCGGACCGACGACGGATTGAAAG # Left flank : GTCTGCGCTTTCGTCGGTCTCAAGTGTAGCTTGATTTTCGGCAGGTTCACTCGGATCTGTCACTTCGGGTACGGACTTCCCTTGCTCGGCTAGGATTGAGCAGTCGAGTAAACTATACTGACTAAATCTCACTGAGACGTGGTTTTATACCCTCAAAATGCGTGCCGACTGTTTCGCAACTCATGAGCCAATGATCGGTCGAGCGTGCGTAATGGATCCAGTTCATAGCATGAAAATTTTCTGTTTATTACAACCCCCAGAGACTGCACCAACCGCTCGATAGAAAGATGCCAACTAAGAGGGTACTAAAATAGGCAGTATCGTGTGAGGGGGTTTATATTGGAATGCGAAAGAGGGGGTTGAATGCGAGTTCGCGTCTTTGCTGGGAATTTTTGGGTTTGGCAGTAATCGGTGGAAAGCGTGGTTGGTGAAACGTAAGTAGGGTGAGCCAACTATCTCACGAACCTTTATTTTGGTGTAAGGCATCCGGAAGGATGTTG # Right flank : AGAAGGGCTGATGACTTGGAATCATAGTCCTCAGCTAAAATATAGGTTCAGATACAAAACCAGACCACTAGATTGGTTTTCTAGGTAATCCTTCTGTTCCTCTCCTCAAGCCTTTTTTCAGGTCGAAAGAGATGGCATCTTACAAGTGAGTAAGCTAGCTTTATACTACTGTATTGCTGACATTGGTGTGTAGCACAGGAATGCGACTATACATTTACGCGGACAGCGGAACACAGCCCCGATTCCATATCCCGTGGAACTCACACCTGTCGTTCCAATCATTCGTCTATGAAGCGGTTAACGAGTACGCGCCAGAGTATGCAACAAGACTGCATCAAGACAAGCATGCACCACCGTTCAGTTTCAGCGAGTTCATCCAGACCGACTCCTACGACGTAACAGATGACGGTCTTCTCTGTGAAGGCGGCTACTGGATCATAAACTCGCCCGATAGTGAGCTTCTGACCGCATGCGCGAATTATGCGCAAGCACACGAAGAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATCGGACCGACGACGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //