Array 1 236914-234893 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOV01000002.1 Lapidilactobacillus achengensis strain 247-4 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 236913 33 100.0 34 ................................. TGGAAATTGTTAGAAATGGAATTGACCACGAAGC 236846 33 100.0 35 ................................. CAATAGCAATTTGCGACAGGCTGATTTTACAGGGA 236778 33 100.0 33 ................................. CGTGCACACCGCGATGACCGTCCAAAGTTGATC 236712 33 100.0 33 ................................. AGGCAAGTTGGTTTCTGGAACATCAGTTTGGGT 236646 33 100.0 33 ................................. AACGTCTAAATCACCATACCACTCATAAACACC 236580 33 100.0 33 ................................. TTAAGCCGCTAACGGAAAACGGCTACGAATTGC 236514 33 100.0 34 ................................. TGGAAATTGTTAGAAATGGAATTGACCACGAAGC 236447 33 100.0 35 ................................. ATTCTTGTTGAAACTGAAAACGGGCTGGAACGATT 236379 33 100.0 33 ................................. CGGCGATGCTTCGCGACCTTGTCGAGCCGCACA 236313 33 100.0 33 ................................. AGCGACGCCGATGCCGCCATCGCAAATTTTGAA 236247 33 100.0 35 ................................. CAATAGCAATTTGCGACAGGCTGATTTTACAGGGA 236179 33 100.0 33 ................................. GTCGATGTGGAAGTTGACCCGCGGCGGCAAACG 236113 33 100.0 33 ................................. CATGACCCGGAAATTTTAACTAATGCCAATTTG 236047 33 97.0 33 A................................ ACATCTCAAACACTCCTCGCATAAAGGACTCTT 235981 33 100.0 33 ................................. CACTCGATTTGCTTCATTGGCTGCGGCTTTTTT 235915 33 100.0 33 ................................. TGATGGTTTGGTTTTTTAATTGCGTTCTCCACT 235849 33 100.0 33 ................................. AGTTAGGCCCAAAAAGAAGCAAAAAATCAGGTA 235783 33 100.0 34 ................................. AAGCGCCGGATATATTGGGCTTATGTTTGATTTA 235716 33 100.0 33 ................................. GAGTAGTCGATTTCGTAGTCGTAGCCGGTCAAA 235650 33 100.0 34 ................................. CTGTAAATCGTCCCACGTGTTAAAAATTTCACGT 235583 33 100.0 33 ................................. ACTGCTATATCCCACCAATTTACTCGCAATTTG 235517 33 100.0 32 ................................. GTTGAGCTAGCTGAATATAACCTTTGTAGCCA 235452 33 100.0 34 ................................. TTGCTGGTCATTGAATGCATTATTCTTGTATAAT 235385 33 100.0 32 ................................. CGCCGGTGTGTTAACTAAATTACAAAATCAAA 235320 33 100.0 32 ................................. CGCACGACCGTCGGCAGTGATCGGCACCCTGA 235255 33 100.0 33 ................................. TGCTCAATTCTTTCCCACCTTTTTGCCCACGAT 235189 33 100.0 33 ................................. AGTTTTATCTGATGCCGTCTCATCATCGCCTTT 235123 33 100.0 34 ................................. ACCGTTGCGTGCCAGAATCGTCTGCTGCTCGGCA 235056 33 100.0 32 ................................. CTACCACCGCTCATCATCCGCCCACTGATTAC 234991 33 100.0 33 ................................. ACTCGAGCCGCACTGTCGTTAGCCGCAAGCGAA 234925 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 31 33 99.9 33 GTCGCACCTCGTTTGAGGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTTAAGCCGCTAACGGAAAACGGCTACGAATTG # Right flank : CGGATGCACTAAAGGAGCCAATCTCGGCCAGTGGTCGCACCTCCTACAAACCAGGATAGGTTGTAGGCAACCCGATCGTGGTGTATACTAAGGGAAGTCCTTTTCAACTCTTGGACTACCTTACAGCCGACAGAAATGTCGGTTTTTTATTTGCAAATTTATTTTATAAACTCAGTATTCCCCGCGTATGCGGGGGTTGATCCTGAAGCAGCCAAATTTTGCAACGATACGACTTGGTATTACCTGCACCTCGTTTGAGGTGCGTGGATTGAAACGAAATGATACTATTAATAAAGTTACTTGCTACACCTCTCCGTCTCGTCTGCGCTTCGTCTATGCTGAACCCCCTTAGTGTTGGCATGGTGCTAATCGAAATCCGGTCGCGCTTCCTTAGAGCAGTTAGCGTCGAGATTTGTCACGAAGCCCCTGTGCCTGTCGGAGCTAGGGTAGCGCTCTTCAGATTTTGTGACCGAAGTGAGCCGGGTGCATGGACCATAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTTTGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 11833-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOV01000031.1 Lapidilactobacillus achengensis strain 247-4 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 11832 33 100.0 34 ................................. TTTTTGCCCGCAGTATCAGAGATCTTGCCCGCAT 11765 33 100.0 33 ................................. ATCGACGTATTTGGTGGCGGTGGGAGTATTAGT 11699 33 100.0 33 ................................. AGTCTGATAATTCATTATACCACAAAAGGCTTT 11633 33 100.0 32 ................................. TTTGTGTCCTAATTCTTCTGCCATTTATTTCC 11568 33 100.0 33 ................................. GCCAAACTCTTTATTAAATCGTTCAATTGATGG 11502 33 100.0 33 ................................. TGAACCGTTCCGTACGCTGCTCTGCCGTCTGTA 11436 33 100.0 34 ................................. AAAAGTGGTTGCAATTAGTTGCATATGTGGTATT 11369 33 100.0 34 ................................. CTTCACCTTCATGCGTTCGACCATTACACGCTCA 11302 33 100.0 35 ................................. GCCCGTTGCCTGGATCGCCTTGGCGGTGGCAGCGT 11234 33 100.0 32 ................................. CATTTGTTGGCGGCGGTGAAATTAAAATATCT 11169 33 100.0 33 ................................. CGCAGTCATGAGTCCTGGCTACATCTCAGCCAG 11103 33 100.0 32 ................................. AATTTCGTCCGTGATGGTCTCTTCTGTCTCTA 11038 33 100.0 32 ................................. GTATCCGTACTGAGGCAGCGTCAATAGACGAA 10973 33 100.0 33 ................................. AAACACGCAGCGACACGTTGGCTGAACTTGACC 10907 33 100.0 33 ................................. AATCGACACAAGCATGGGCGATAGCAAACCATT 10841 33 100.0 33 ................................. AGCTCAGATGGTACTAAAATTTGGCAAAAGACG 10775 33 100.0 34 ................................. TTGAGACTTAGCTCGTTCCAAACGCCAGCCTTTA 10708 33 100.0 32 ................................. AGTTAGACCGACCGCATCGGTATTTAACGCTT 10643 33 100.0 32 ................................. AGTTGTTCGCTGGTCGCGTGCAGCCGAATATA 10578 33 100.0 33 ................................. GATCGGAAAGATTAGAGATTCCGCAAGTAAAAA 10512 33 100.0 33 ................................. AGACGCGTTAAATGACAGCGATAATTATTGGTA 10446 33 100.0 34 ................................. GCCCGTGCATGGGTGCTAGGTGTCTGGCGTGTTG 10379 33 100.0 33 ................................. TCGAGATAGAGTGTGACGACTGACTTTGTCAGG 10313 33 100.0 33 ................................. TTGCGTAAAAGTACGTCCAACCTTGCTTATACC 10247 33 100.0 32 ................................. ATATATTTTTGGCCTCCAATTTAATAAACAAA 10182 33 100.0 32 ................................. TTTGCGGCCAAGAAGGCGAAAATTGATTCCAA 10117 33 100.0 32 ................................. TGAAATACCAGATGATACGGCCAAGTAAGGGC 10052 33 100.0 33 ................................. ACCGCTGTGGACTTCAAGGAGAAGAAGCACACG 9986 33 100.0 33 ................................. GCGTTATTGTCTGATCACTTTAACTATGTTTTT 9920 33 100.0 33 ................................. AAACTTCGTACAAAAGTTCAAAGCTCCAGCAGC 9854 33 100.0 34 ................................. AAAAAAAGGTATCCGCCAGATTGATATTGGGTAT 9787 33 100.0 32 ................................. TTTTACTTCTGCGTAACTGTTTAAATCCTGTG 9722 33 100.0 32 ................................. TGGCGGTGTGGTGCCCTTGAGCTCCAGCCCTG 9657 33 100.0 33 ................................. ATATAAAGGCGGCCTGCAAGATCCGCGCCACTT 9591 33 100.0 33 ................................. AAATCAATTACATCTTGACGTTTAAGTAAATCG 9525 33 100.0 35 ................................. GAATGACTGCGATAACGTATTGATGACTTGATATC 9457 33 100.0 33 ................................. ACGTTGAAAAGAAACCATCGAAGAGAATGATCC 9391 33 100.0 32 ................................. TGGATCAAAGGTATTGATTTAAACGACTATAA 9326 33 100.0 33 ................................. AATGCGCGCAAGTCGTTTTCTATGGCAAAGAGT 9260 33 100.0 33 ................................. AACGCCTTGGGCTAGTGTGTCCCCAACAATGGC 9194 33 100.0 32 ................................. AACCCGTCCGCCGTCTAGTCCGGCCTTTAACT 9129 33 100.0 33 ................................. AAAGATGGTCGCGGGGGAGATGGACTTGACATT 9063 33 100.0 32 ................................. TCCCTATTATAGGCGTTTATTTTTTTGCTAGT 8998 33 100.0 32 ................................. ATCAAGAACTTTATGAATCCTAGAATGGCTAG 8933 33 100.0 32 ................................. AGTTGTGGTGTCGGCAAATTTGAACTGTTTAT 8868 33 100.0 35 ................................. TGCTAGTCATTGATGGTCATCTGGAGGGCCGGCTG 8800 33 100.0 34 ................................. ATGACTCAGCTGCAATACTTGGCGACAAAAGGCA 8733 33 100.0 33 ................................. CAAACCATGAAAATTCTCTGTCATCGGATCCGT 8667 33 100.0 33 ................................. ATTAAATTTAAATTGTATTCCGTTATGTCGTCG 8601 33 100.0 34 ................................. ATAATAACCCATATCGCTTAGTGCTTCTACAATC 8534 33 100.0 33 ................................. TTGGCGTGATTACGTCGGTGTCTAGCGCTGCAT 8468 33 100.0 33 ................................. CTCCAAGGAAAAGAGAATAATTCTCGAAGCGTT 8402 33 100.0 32 ................................. ACTACTCAAGAAGCAATGGGTATTGATCCTAT 8337 33 100.0 33 ................................. AAATCCGTTTAGTGCGATGGTTGTCCTATCTTG 8271 33 100.0 33 ................................. ACCTCACTAATATAAAATAATAACCGGCTTTGC 8205 33 100.0 35 ................................. AGGCAATTGGCAGACTTGATTCTTGGCTTGGTAGA 8137 33 100.0 33 ................................. TACAAGCCGGCCCTCTGCTGGAGTTTGCTATCA 8071 33 100.0 32 ................................. ATCTAGCGTAAAGCCTTCGCGCTTGTTGCCGT 8006 33 100.0 32 ................................. TAACGTTGACCCCGTCCGCCCGCTTGTTTTCC 7941 33 100.0 33 ................................. ATTTTAACGCGCCTCCACAATCTCGGCTTGATC 7875 33 100.0 33 ................................. TATTCTCATTCTATCGTACGCGCGTTCGTTGTA 7809 33 100.0 34 ................................. TCTTCAATTGCATCATCAATGCTGTCTAAAGTAT 7742 33 100.0 34 ................................. CTATGTAAAGCCGCCTCGATTCGCAAGATAATTT 7675 33 100.0 35 ................................. TTAACACGAGTAATGGCGCTAACTAGTGGAGAAGT 7607 33 100.0 33 ................................. GCGGCTGTCGTAGCATTGGTTGCATCGGTTGCT 7541 33 100.0 32 ................................. ATTTTTTGCAGAGTCAGTTTTCTTCTGCCATA 7476 33 100.0 33 ................................. CTTATTATATGCAGCACTAGACACCGAAGTGAT 7410 33 100.0 34 ................................. TGTTGTGGTTTCCTTACCGGTTCTAGTGTTGGTA 7343 33 100.0 33 ................................. CGCTTGAACGAATAACGCCATTTGAGCCTTTGT 7277 33 100.0 34 ................................. AACCCGCGCTGGATAAGCAGGTTGTCCAGACGGC 7210 33 100.0 32 ................................. TTAGTGAATTGTTTAACAAGCAAGTACCGGAC 7145 33 100.0 34 ................................. AACGTTGCCGGCGAAATGGATCAGATCCTAAAAG 7078 33 100.0 33 ................................. TGGCACGATCAAAACCGTTTTCAACGCGATCAA 7012 33 100.0 32 ................................. TGGGATCTAGCAAAATCCCCACAGCTGACGAC 6947 33 100.0 36 ................................. TTAAGATGCTTGATCCCTGCTTGACCAGTGCCAGGC 6878 33 100.0 33 ................................. AGTGTAACCCATTTGTGCGAGCTCCCCGGCGTT 6812 33 100.0 33 ................................. ACAATGTTATGAGCGGCATTTATTACAATTGAC 6746 33 100.0 34 ................................. AACTAATAGATCCATTTACTACCCTCCAATCGGC 6679 33 100.0 32 ................................. AGCACAGGCACGACCAGTTCGTGGACGCTTTT 6614 33 100.0 33 ................................. AATCATTCTGCAGGAGCCTTTGCCTATGCGGAT 6548 33 100.0 33 ................................. AAGAATGGAAGGACGTGACAATCGCCGACAACT 6482 33 100.0 32 ................................. CGTCATCTGGGTCATTGACATCACTCGCAATC 6417 33 100.0 33 ................................. AATCAGATAGCTACCTACTGGTAATTGCGCCAA 6351 33 100.0 33 ................................. ATTCTCCATCCGCGTTTTGCCGGCAAAGGGGTC 6285 33 100.0 33 ................................. ATCTGCCATGTCTAGCAGCCACTTATCGTAATC 6219 33 100.0 34 ................................. CACGACAGAATCGACCAAGGCAACGCAAAACGCC 6152 33 100.0 32 ................................. CATAAACTTGCTTGCCATCGCTAAACACCTTT 6087 33 100.0 32 ................................. AGCTCGATATAGCTGTAGCCATGGTAATTATT 6022 33 100.0 32 ................................. ACCTATATTGCCGACTTAAGCGGTTCACAAGG 5957 33 100.0 32 ................................. AAATCCGTTTAGTGCGGTGGTTGTCCTATCTT 5892 33 100.0 32 ................................. ATGGCTCCTCCTATTGGGCATCTCACCCAAGC 5827 33 100.0 33 ................................. GTTGTAGCCGGTATGGTTGCGGCAATACTTGCT 5761 33 100.0 33 ................................. ACGAACATTATTCTCGAAATCATCAATCAAAGC 5695 33 100.0 33 ................................. CAGAATCTGGGCCCAGTCTGTGATTGGGCCCGT 5629 33 100.0 33 ................................. TCGTGGCTTATAACGCTCCAACGTCAGTTTCAA 5563 33 100.0 31 ................................. CACATCACCATACACCTCCCCCACAGTCGCC 5499 33 100.0 33 ................................. ATGTATATTACTTTGTTTGTGTCCATCATGATG 5433 33 100.0 32 ................................. CCACGCAACCAAGACTTTGACGGCGTCCTGGA 5368 33 100.0 32 ................................. CAGGCATCCACGTTTTTGCGCTTGAGATCACC 5303 33 100.0 34 ................................. ATGAGATCCCTGGCGACCGGTGGCCAAGGGAAAA 5236 33 100.0 32 ................................. TTTTAGCCCCTATCAGTGCAATCTTTTACACT 5171 33 100.0 32 ................................. GTCCAAATCGGTACAGATATGCTTGTCAAATT 5106 33 100.0 33 ................................. CCATCGGCACTATATTTCGCTAACAAACGTCCC 5040 33 100.0 31 ................................. ACCAATTTATCAGCATCAGTTTCTGATTTTG 4976 33 100.0 34 ................................. ATACTAATCTGTTATAGTCCATTAAAAAAAGCCA 4909 33 100.0 32 ................................. TACGCCTAGCAACAACGACGAGCTCATGACTG 4844 33 100.0 33 ................................. AAGACGAGATTGGCAATGACATTATTGATTTCA 4778 33 100.0 33 ................................. ATAAAGAAACCGCGGTGATCAATATTCGTTCGA 4712 33 100.0 32 ................................. CCACAGCAATTTGCGGCACGCGAGTTTTGCTG 4647 33 100.0 34 ................................. TTTGGTCAAATTTTGGTCAAATTTAGTCAGCCGG 4580 33 100.0 33 ................................. ATAGGATTGGCGCCCGTTGATTTTAGCGGTACT 4514 33 100.0 32 ................................. CAGCCGCGCGTGGGCTTGATCGATTAAATCAC 4449 33 100.0 34 ................................. ATTCCCTCCGTTTCGAGATCCCGTTTTGCAAGTG 4382 33 100.0 34 ................................. TCGGAGTTGATTTAAGAACCCATTCTTGCGCCGG 4315 33 100.0 33 ................................. CGAAAATTGAGATCCTGGGTAAAGGTGGCGGCA 4249 33 100.0 34 ................................. AAACGATCAGCAATTGCACTTTTGACAAACGAAT 4182 33 100.0 33 ................................. TACGGCTTGATTTGCCGCGGTCGTCGCATTGGT 4116 33 100.0 34 ................................. AGCGATGGCAATCACCAGCTCGATTAGCGCAAAG 4049 33 100.0 33 ................................. TTGGCCACTTCGTCAGTCGAGGCGATCAGACTG 3983 33 100.0 33 ................................. TAAAAGGTAATTCCACAGCCCCAGCATTACGTT 3917 33 100.0 33 ................................. ATATATTTCTCAATCACCTTTGAGGAACGGAAT 3851 33 100.0 33 ................................. AAAATCGCGAAAAATTAACACCTTATAAAATTG 3785 33 100.0 33 ................................. AAGATCAGCGAGGCTTTGCCGGCGTTTTCGATT 3719 33 100.0 34 ................................. AACACGGCAATTACTAATCTAGATTTGAATAAGT 3652 33 100.0 34 ................................. AATCACTTTTGCAAAAACGATCGTCTTGCCTGTT 3585 33 100.0 33 ................................. ACGAACTGATCTATTGACCTGGTTCGCTAAAAA 3519 33 100.0 33 ................................. ATTCATGTTTATTTTAGTGTACCCTAACAACTC 3453 33 100.0 33 ................................. AACTCGCAGGCTTTTGACGACCTGAACTAACGA 3387 33 100.0 32 ................................. CAAATAACCGCCGCGAATGTTGAATTGCGTGT 3322 33 100.0 34 ................................. ACCGCGACGGCAAGTGGGAGCCAGCCTTCCCGAA 3255 33 100.0 33 ................................. TTTTTTCCGCTCCTCATATAGCTCGTGGAGCTC 3189 33 100.0 32 ................................. AAGCGTCTTAAGCTTGCTACTACTTGCTATAA 3124 33 100.0 34 ................................. TGGCTGGTCGTAAGGCGTTAGGGTTTAAAAACAC 3057 33 100.0 33 ................................. TGACAGCCTACAAAAGTTTACTCAAACAATGGG 2991 33 100.0 33 ................................. CTGGTCTTATATTGTGATAATAAACTCAATATC 2925 33 100.0 33 ................................. TTTATAAACTCAACAAAATGTATTTAAACTTAA 2859 33 100.0 33 ................................. TCTGCTGAGTTATCAATCGTAAAATATTGACAT 2793 33 100.0 34 ................................. TAACCGCTTCCGCCGCCTTGTTAGGGTCTGAACC 2726 33 100.0 32 ................................. ATTTTTAGCGCCCCCTAAAATTTTTGTCTGAA 2661 33 100.0 32 ................................. AAGCATTCTTAGGCTTGCTACTGCTAACTAAC 2596 33 100.0 34 ................................. ACAAGGTGCAAGAATTAACACCTGATGATAAAGG 2529 33 100.0 34 ................................. AGATCATCGATCTCTAGGCGGTGACAGGCAGGGC 2462 33 100.0 33 ................................. CAGCTGGAACTAGCGGCGTCAATTTTTTAATAA 2396 33 100.0 32 ................................. ACACAAAATTTGGTTACTCGCTACCACGCCGA 2331 33 100.0 33 ................................. AAACCGTTTGCCAGTGGTACGGGCACAATATGG 2265 33 100.0 33 ................................. CGCTACTATGCAAGCCGTTGATGATGACGGGTT 2199 33 100.0 34 ................................. AAGAATGGTATGAGTTTAATATGGTAACCTATTC 2132 33 100.0 34 ................................. TCAACCGAGAAATGGGACAGCTTACCCAGTGCCT 2065 33 100.0 33 ................................. CACCACTCAAATCCGATCGGCGCGGCAGTTTTT 1999 33 100.0 34 ................................. ACATCTCAAACACTCCTCGCATAAAGGACTCTTG 1932 33 100.0 32 ................................. TCGGCCCAGCCTGCGAAGGCCGCCGGGCCGCC 1867 33 100.0 32 ................................. ATGTCCACTGTCAAGATATTGGTTAAGTTCAT 1802 33 100.0 33 ................................. ATGGAGCGGCTACGCTCCGAACTAGGTTGGTGA 1736 33 100.0 34 ................................. CCAGTCTGCCAGGCTTTTAGAGCTAACACCTAGC 1669 33 100.0 32 ................................. GAAAGTCCATAGCCGCCCCGCCCTTGTAACTC 1604 33 100.0 34 ................................. ACAAAAACGAAGACTGGGCAAAAATTGTGGTCAC 1537 33 100.0 34 ................................. CGAAGGATTTCTCGAATGGCTATCTGGCATTGAC 1470 33 100.0 33 ................................. TTTGGCGCAATTAGGGCTAATCAGATACGTGAA 1404 33 100.0 34 ................................. GGTCAAAAGATTCTTTGACGATCGGCGATCAAAA 1337 33 100.0 33 ................................. CACATTCGCAAATAAATATGCCAGCCTGTTTCT 1271 33 100.0 34 ................................. AAAGTGATCAAACAAATCACGGTCGGCGCTTTGA 1204 33 100.0 32 ................................. CAACCCAGATAATCGATCCTTAGCTACCCGCA 1139 33 100.0 34 ................................. TGTTGAGCTAGAAGGTGAAAAATACCGTCTTAAC 1072 33 100.0 32 ................................. GCCGACTCAAGCCAGATTGTGGCTTTGTCCTG 1007 33 100.0 34 ................................. ATCGTCAAAAAGATGGAGCGCACACGCTACCAGC 940 33 100.0 33 ................................. TTGGGGTCACCGCGACGCCGGATCGTGGCGATA 874 33 100.0 33 ................................. CGGCTGTCTGTGTTAGCACCATAGAAACACTGG 808 33 100.0 33 ................................. GTACAAGCCGGGGAAATCGAACCGACTTACACA 742 33 100.0 33 ................................. TTAAACCTTGGGTCGTCGTCGGGCGCATCGAGT 676 33 100.0 33 ................................. ACAATTCACCGCCAAGCAGATCGCCGCTGTCAG 610 33 100.0 33 ................................. CAGATGACCATCAACCATCAGACAGCCGCCCCT 544 33 100.0 32 ................................. CCATGACTGTAATAATATAGTCGTCGTACGCA 479 33 97.0 33 .......A......................... CGGCTCTCAACGATATGTTAGTACCGGTTGCGG 413 33 100.0 33 ................................. CTTGACAATTGAACATTACATACCAGCCCTAAG 347 33 100.0 35 ................................. CAATAGCAATTTGCGACAGGCTGATTTTACAGGGA 279 33 100.0 32 ................................. GCTGGTTTGAAATATGCGAAGCGTCTTTTGCA 214 33 100.0 32 ................................. ACCCAGAAGTCAGTTGACTTGTTACAAGTAGA 149 33 100.0 33 ................................. AACGTCTAAATCACCATACCACTCATAAACACC 83 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 179 33 100.0 33 GTCGCACCTCGTTTGAGGTGCGTGGATTGAAAT # Left flank : TCAATATCCACCATTCCTGTGGAAGTGAATAGATGTTAGTTGTTGTTGCTTATGATGTATCATTGGCCGATAAGAATGGTGTGCGCCGGTTAAGACGGGTCGCCAAGAAGTGTGAGGCTTACGGTCAACGGGTGCAGAATTCAGTCTTTGAATGTTACTTGGATTATGACAATTATGTTAAACTAAAGGTGGAATTATTAGCGTTGATTGATCAGAAAGTTGATAGCCTGAAGTTTTATCAACTGGGTAAGAATTATGCGAATAAAATTGAGACCTTTGGGGCTAAGCAAGTATTTGATCTGCATAAAGATACACTGATCTTTTAAGTTGCGGGTGCGAGCTAGAGGCAAACATAATCGGCCTAGTGGGTTCGCACAACAAATAATGATAAATGTGCCTAATAATTAGAATTTCATCTCATCGTTTATCGTTGAGTATCGTCAAATTACCTGTTTTTTATTATTATCAGAATTTTTCGGCGATTTTTGTATAAAATCGCG # Right flank : TTTAAGCCGCTAACGGAAAACGGCTACGAATTGCGTCGCACCTCGTTTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTTTGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //