Array 1 53454-54274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMK01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51246 N51246_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53454 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 53515 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 53576 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 53637 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 53698 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 53759 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 53820 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 53881 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 53942 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 54003 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 54064 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 54125 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 54186 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 54247 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70533-72196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMK01000038.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51246 N51246_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 70533 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 70594 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 70655 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 70716 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 70783 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 70844 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 70905 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 70966 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 71027 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 71088 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 71149 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 71210 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 71271 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 71332 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 71393 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 71454 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 71515 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 71576 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 71637 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 71740 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 71801 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 71862 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 71923 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 71984 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 72045 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 72106 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 72167 29 96.6 0 A............................ | A [72193] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //