Array 1 191433-188507 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIGT01000003.1 Klebsiella pneumoniae strain TUM14014 sequence003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 191432 29 100.0 33 ............................. GTCGGAGAAGCGCGTTTTGCGCGGATTTCCGGC 191370 29 100.0 32 ............................. CTTACGTGGGCTGGGATACCGACGTGGCGGCC 191309 29 100.0 32 ............................. AGTGTTGCCGCCATGGCCCTGGCTCGCTGGGA 191248 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 191187 29 100.0 32 ............................. GCGCACAGCAACTACGCTGGCGCGCTGGAGCA 191126 29 100.0 32 ............................. TCAACGCGCTGGTGCAGGCAAAAAAACTACAG 191065 29 100.0 32 ............................. CAATGGTGATGGACTATGACCGATAGCAGCGT 191004 29 100.0 32 ............................. CAATATATGGTGTGCTGACGGGCTGTAAAAAT 190943 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 190882 29 100.0 32 ............................. GTATTGATAACCTTTAGGATTTATAGAAATGG 190821 29 100.0 33 ............................. TGGTGCCGCTGAAATTAGCGCCGCTTACCAGGC 190759 29 100.0 32 ............................. CCCTGCGGTGCGCCAGTTCCCTTATTGGTGGC 190698 29 100.0 32 ............................. GCGCAACTTAAACTGTGGGTCTTCTCTGGACA 190637 29 100.0 32 ............................. ATCAACTGATTCGCTCAGCCTGGGAAGATGCA 190576 29 100.0 32 ............................. TGTTCGGTAATTAACCCATCAATTGATGGATG 190515 29 100.0 32 ............................. CGCCGTGGGGATTTCTTTTTTATTTTTTTTCC 190454 29 100.0 32 ............................. AATCTGGCACTCGCTTCCGGTGATATTCTCTA 190393 29 100.0 32 ............................. CAGAAAGTCACTTAGCATCGCCTTTCTCCTGT 190332 29 100.0 32 ............................. TCCTATCAGACCAGGATTAACCCGCCTTTCCT 190271 29 100.0 32 ............................. CTGGTGGAGCGCGCAGAACTGTATTCGACAAC 190210 29 100.0 32 ............................. GTGGCCTTTCATGACCGTTTCCGAGCATGGAC 190149 29 100.0 32 ............................. CACAGTCTGTTTTCCAGAATGTGCATGGTGCA 190088 29 100.0 32 ............................. TCATCCAGCAGGACAAAGCCAGAAAACTCTTC 190027 29 100.0 32 ............................. CAACTCCGCAGCGCCTGGGAGGGGTTTCGGAT 189966 29 100.0 32 ............................. CTGGTCCCTTTCTTGAATCCGCCGGATGCTGG 189905 29 100.0 0 ............................. - Deletion [189877] 189876 28 86.2 32 ...C.G.G-.................... TACACAAAAACGTTTTACAGTTGCGCAGCGCT A,G [189866,189873] 189814 29 100.0 32 ............................. TGCGCGGCAGAATCGTCGCCGTCCCGCCCGGT 189753 29 100.0 32 ............................. CAGGTCATGATGAAGACCTATCCGCTGGCCGA 189692 29 100.0 32 ............................. GGATTCACCTCGACCTGCTACGACGGACAGTA 189631 29 100.0 32 ............................. GCGACGGCGTGGATAGTCGGGATTTCACGCTA 189570 29 100.0 32 ............................. GCGACGGCGTGGATAGTCGGGATTTCACGCTA 189509 29 100.0 32 ............................. CCGGTTGACCGCACGGCGCCAGCGCGCCCCTT 189448 29 100.0 32 ............................. AACTGTCCGACGTGGTCGCCGGTCGTGATATG 189387 29 100.0 32 ............................. GGGATAATCTCAGAGTGTAAGTCATTGTCACA 189326 29 100.0 32 ............................. TCGACGGTAACCCGTGGAGCAAACTGGAGCCG 189265 29 100.0 32 ............................. GAGGCACTGGGTGAATTATATGTTGAGATTGA 189204 29 100.0 32 ............................. CAGGAAAAGGCGATACAAAAGGCAGTGAGCGA 189143 29 100.0 30 ............................. TGCGGCATCGCTCTTCATGACTGGCGATAT 189084 29 96.6 32 .....T....................... AGCTACTGGCCGCCAGCCACTGGATGACGTTG G [189080] 189022 29 100.0 32 ............................. CCGTGAGCCGTGCTCCTCGGTCGCCATCCCCA 188961 29 100.0 34 ............................. CGAACCAATAAGCGCCCCTTGCCGAGTGACTCCC 188898 29 100.0 32 ............................. GCTGACTGAGCCTCTTTATCCCATTGAGCCTT 188837 29 100.0 32 ............................. CGTTAATTTTTGCGGTGATATCGTCGTATGTC 188776 29 100.0 32 ............................. CGCGGCTTTGCCATTAGATGTAGTCCCCGTCT 188715 29 100.0 32 ............................. TTCACATAGTCCAGCTCATACGCCAGCGGGAT 188654 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 188593 29 100.0 29 ............................. GGGGTCACTTGGGGGAAACTGAACTAACT 188535 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================== ================== 49 29 99.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGTTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGGGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGACCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20303-21062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIGT01000031.1 Klebsiella pneumoniae strain TUM14014 sequence031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20303 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 20364 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 20425 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 20486 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 20547 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 20608 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 20669 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 20730 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 20791 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 20852 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 20913 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 20974 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 21035 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.2 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //