Array 1 40790-39541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDV01000046.1 Escherichia coli strain 65-L97-A entry46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40789 29 100.0 32 ............................. CGGGGTCATAACTGGTTTTAGCCTGCACTGCA 40728 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 40667 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 40606 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 40545 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40484 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40423 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40362 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40301 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40240 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40179 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40118 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40057 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39996 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39935 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39874 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39813 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39752 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39691 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39630 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39569 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67555-66489 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDV01000046.1 Escherichia coli strain 65-L97-A entry46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67554 29 96.6 32 ............................T TCATCTTCTTCCTCCCAGCGCTGCCGCTCCGC 67493 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 67432 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 67371 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 67310 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 67249 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 67188 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 67127 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 67066 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 67005 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 66944 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 66883 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 66822 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 66761 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 66700 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 66639 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 66578 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66517 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //