Array 1 154303-153419 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MEKC01000062.1 Salmonella enterica subsp. houtenae strain CFSAN039533 scaffold_9, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    154302	    29	 100.0	    32	.............................	GCTTGATGATTTAGCGGAAAAAGCGTTAAATA 	
    154241	    29	 100.0	    32	.............................	CGTTAATTTTTCAGCGGTTTCATAATCCTCAT 	
    154180	    29	 100.0	    33	.............................	CCGGGTTATTCGGGATTTGTTAGCCTTAAAAAC	
    154118	    29	 100.0	    32	.............................	CACTCCAACGATGCGCCCGGATGGTGAGAGCG 	
    154057	    29	 100.0	    32	.............................	TTGGCGCAATTTATCATGTTGACCCAACATTA 	
    153996	    29	 100.0	    32	.............................	ATGGTCATTTAGCGGCGACCAATAACCCGGAA 	
    153935	    29	 100.0	    32	.............................	CACAGATTTTCATTTGATTGCAAACATTTCGC 	
    153874	    29	 100.0	    32	.............................	TTTTTATGGGTCAGGCGATTATATTCGCGTGG 	
    153813	    29	 100.0	    32	.............................	CCTATTTAATGGCGCTGTGAATACTATCTCAC 	
    153752	    29	 100.0	    32	.............................	TTGGGCGTGATATTATTTTAGTGGATTTTTCA 	
    153691	    29	 100.0	    32	.............................	TCACCGCCGTTTCTTGAACCGTTTCTTGAGGT 	
    153630	    29	 100.0	    32	.............................	CAAATACATATTTATCAAATATGGGATATACG 	
    153569	    29	 100.0	    32	.............................	GATCTGTCCGGTATGGTTATTGTCTGCGGATA 	
    153508	    29	  93.1	    32	................T...........A	GAATGGCGCTAGTTCGTCATATCAATGTGAAT 	
    153447	    29	  89.7	     0	............T..............GT	|                                	
==========	======	======	======	=============================	=================================	==================
        15	    29	  98.9	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA
# Right flank :  TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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