Array 1 397780-400007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085633.1 Pectobacterium brasiliense strain TS20HJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 397780 29 100.0 32 ............................. CCCATACGTTTCAGCGCATCCCACATACCGGT 397841 29 100.0 32 ............................. GTTTCGGAATTCACCAGCGCGTCAGATGTTGG 397902 29 100.0 32 ............................. GGGTGAGAGGTGGGATTAGACATATCAGCTTA 397963 29 100.0 32 ............................. CGTCCCGCGCCTCTGCGTCACATGGGAATTGA 398024 29 100.0 32 ............................. AGAAAATGGATGGATTAGTAGTCATAGTGATC 398085 29 100.0 32 ............................. CTGTAGCTTACTCATAGCGCTTCACTTAACAC 398146 29 100.0 32 ............................. TTAATGAGCGTAATAACAAATCGTTCATCGGT 398207 29 100.0 32 ............................. AATGTAATCTACAAAGGCACTGAATACCCATC 398268 29 100.0 32 ............................. TTCTCAACAAGGCCACGTGTACGGTTTGTGGT 398329 29 100.0 32 ............................. TCGCCGCCGGTTTTTTTTTCTTTTGCAGTCAG 398390 29 100.0 32 ............................. GCGCATCATCACTTCGATGTCTGCCTCAATTT 398451 29 100.0 32 ............................. CAAAAAAAATCCCGCCGTAGCGAGATTAGTAA 398512 29 100.0 32 ............................. CGCTCGAAGACATGACCGAGGCCGAGCTCCGT 398573 29 100.0 32 ............................. GACGAGAATAGCGAGCTGATGGATCTCATGCA 398634 29 100.0 32 ............................. GATTTATTTTTAATAACAACGAAAATACACGA 398695 29 100.0 32 ............................. GGATTGGCGTTGGCGCCCGTGCTGCGAATGAT 398756 29 100.0 32 ............................. ACGCTGCCGAATCCGACGGTCTGTTGTCTTTG 398817 29 100.0 32 ............................. GTCTGTTTGTTGGAACCTTTTGAGGCGCAAAA 398878 29 96.6 32 ............T................ ATGGGCGTCAATATCGATGGCAAATTTTATGA 398939 29 93.1 32 .A...........G............... AACTGTTCGAGCGTCGCGGTTTCGCTATACAT 399000 29 100.0 32 ............................. ACGATAGGACGGGGGATTTTTAGGGCATTTTC 399061 29 96.6 33 ........T.................... TTAGCGGCCAACACCGGTCTGATCTCTATTGAA 399123 29 100.0 32 ............................. ACAGCTTACCCGTGAGGAATGGACTCAGGGGC 399184 29 93.1 32 ............TT............... TATTTATGCATGGCTCCGTACGAGATACCAGT 399245 29 96.6 32 ............T................ CCGAAAAATCTGGCACGTATCGCGAATGACCG 399306 29 93.1 32 .A........T.................. GTAATCGGTTTGTCCGGTACTCCGTTCGCTAA 399367 29 100.0 32 ............................. TAATGATTGTTGACCTGATCTCGGAAGCCGGA 399428 29 93.1 32 ...............A............A GATTCAGGAATACTTAGATGGTCAGCAGCAAC 399489 29 96.6 32 ............T................ AGCGCGACATCATGTCGTTGTTGCTTAGCGTC 399550 29 96.6 33 ............A................ GACTGCCAGTCTGACGATCCTCCGAGCCCAGCA 399612 29 100.0 32 ............................. ATTCGATAGCCTGTCTGCTGCATCTGATTGAC 399673 29 100.0 32 ............................. TCGGCAACGATGTGCGCGATGTTATCGCAGGT 399734 29 96.6 32 ............T................ TGCGGCGTGATCTGGGGTTGTCTCCGTGGCCT 399795 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 399857 29 96.6 32 ........T.................... CCTCCTACGGTGCCGCCCGTACCTCTATGCGT 399918 29 96.6 32 ............T................ CAAAGTTCATTCACTGATGGTTCATCTCCACC 399979 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACCCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3837666-3838956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085633.1 Pectobacterium brasiliense strain TS20HJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3837666 28 100.0 32 ............................ ACCATTTATAACAAGTGATCCGCTGGTTGTAT 3837726 28 100.0 32 ............................ GGAAAAGCAAACCAGACCCGGACCCATTAACG 3837786 28 100.0 32 ............................ GACCACATCGCCACGGTCACCGAATGCTGTGT 3837846 28 100.0 32 ............................ ATTTCTGCTGTGCGCGCCTGAGGAAGAATATC 3837906 28 100.0 32 ............................ CAGTTGAGACGGACGCAACCGGCATTCTGCAA 3837966 28 100.0 32 ............................ TGTACGCCGGCACCGGTTGAGCAATGCGGCGT 3838026 28 100.0 32 ............................ CATTTTTCAGATGAACAGACCCAGACCGAACC 3838086 28 100.0 32 ............................ CACGATGGCAGGCAGTTTGCCCGCCGCCGTAC 3838146 28 100.0 32 ............................ TGGTCGGCGTCAATATGGTACTGGAGCTGAAC 3838206 28 100.0 32 ............................ GTAAAAAAACCTATCACCAGTTAGGTAATGCC 3838266 28 100.0 32 ............................ AACGATGGGATTAGCTATCGCGGGCGCACCCA 3838326 28 100.0 32 ............................ GCCGCCGCCGCCGTGTTCCCGCTGCCTGAATT 3838386 28 100.0 32 ............................ TTGATGACTTCGGCCTGTTTTTCAAATGTCAT 3838446 28 100.0 32 ............................ ATAGCAGCACTCGCAACGTGACGGCAATTCAA 3838506 28 96.4 32 ................A........... CCCTGCGGTTAATCACACCCACAATGCCGTTT 3838566 28 100.0 32 ............................ GCTGGAGTTCGCCACTGAGTGGGAGGCCGAGA 3838626 28 100.0 32 ............................ TGCTCGTCCTGAGATGCCGCAAGACGCGATTC 3838686 28 100.0 32 ............................ GTGGCGAGTCCTAACGTCGAGTTTTACGAAAT 3838746 28 92.9 33 ...........C.....T.......... GCCAAGCGGTGGCGATGAGCCGTTTGTGAACAT 3838807 28 100.0 32 ............................ ATAATTGGTGGTATTGGACGGATATGATGGCA GT [3838817] 3838869 28 100.0 32 ............................ TAGGACCTATTGACTCTTAATCAATTGGTCGC 3838929 28 82.1 0 ...........A.C.A....T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTCAGTATAGATATTAATCACTCGGTTGTATATCCACAGCATATGCAGATACCTGACATAGGCCTATAGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCTTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAATGCTGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCACTAGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCAGTCGGGCTAGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3846031-3844861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085633.1 Pectobacterium brasiliense strain TS20HJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3846030 28 100.0 32 ............................ TCCCGCCGTTCCAGGCGGCAAATTCCGCGTGA 3845970 28 100.0 32 ............................ ATCCATGATTTCTCTCTCGCCGATTTGATCGC 3845910 28 100.0 32 ............................ GGACGACGAACTCGCCAGTAAACGCCGAGTCA 3845850 28 100.0 32 ............................ AACAAGCCACGCAACAGGCTCTTTCGCCGCCT 3845790 28 100.0 32 ............................ CAAAACGCGGAACATGGCGGCGGCGAATACAA 3845730 28 100.0 32 ............................ CGTTGCACCAGCCGCTCTGGGACGGGCGTTTG 3845670 28 100.0 32 ............................ AACCGCTGAAACTAAAGCACACCCACGCCAAG 3845610 28 100.0 32 ............................ ACGTAGGCAGTAGCGCTGCCTTTTTTGGGATC 3845550 28 100.0 33 ............................ GTGCGCATCGCGTATGAGGATGCCGACGAGCAA 3845489 28 100.0 32 ............................ ATTTACCCAATCAGTAGCGAGAGTAGCAGCGG 3845429 28 96.4 32 ...........T................ AAGATGCAGGTTGATGCTGCATACCGTGAGGC 3845369 28 96.4 32 ...........T................ CCAATCTGGCGCGATTTCAGGATATTGCGGAT 3845309 28 96.4 32 ...........T................ AGTGAGAGAAATAGTTTCACTGAGTCAACTCG 3845249 28 96.4 32 ...........T................ TGATGCCATCCGATTCACAGCAAACGGGAAAA 3845189 28 96.4 32 ...........T................ GGAGGGAAAAGCGTTCCACCAGCTCCAGTGGG 3845129 28 96.4 33 ...........T................ ATCTGGACTATCTCCGTATGTTCCGTGATCGAA 3845068 28 96.4 32 ...........T................ GCGCAGCCGGTATAACTGTGAGGGATGAGTGA 3845008 28 96.4 32 ...........T................ TCCTTGAAGCATTCCCCCACAATAGCCTCATA 3844948 28 96.4 32 ...........T................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 3844888 28 75.0 0 ...........T.C......T...TCCT | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTATAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAATTTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAACACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGAACGTTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCATTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3854975-3855722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085633.1 Pectobacterium brasiliense strain TS20HJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3854975 28 100.0 32 ............................ AACAGGCATGGTCTGAATTCGAACTTGAGCAC 3855035 28 100.0 32 ............................ CTCCCCGCTAAAACTGATTCTGTGAAATCTAA 3855095 28 100.0 32 ............................ CTGCCCATACGTGCTACGTCGAGCCATTTTGC 3855155 28 100.0 32 ............................ CGTGGTCACCACCTGACCGGTTACCTGATTAA 3855215 28 96.4 32 ...........C................ TGCTAAACCACCATCTTTTTTACTGACTGCAT 3855275 28 96.4 32 ...........C................ ACAGGACTAACCATGATCGCAACCTACATCAC 3855335 28 96.4 32 .................A.......... TGATTCAGCGCTGCTTTTTGCGGCGTGATGTT 3855395 28 100.0 32 ............................ TCGCTATGCAACTAACTGCTGAGTAACTGGCA 3855455 28 92.9 32 ............G....T.......... GCAACGGCGGCAGGCACCGCACTTAAGGCTTG 3855515 28 96.4 32 .............C.............. GTCATCACGCTGGCGTAGGGAATCAATCCAGC 3855575 28 100.0 32 ............................ ATGCCAACCGGTTTGTTGTTGCAAATCAATGA 3855635 28 89.3 32 ...........C.C......A....... ATAAAAAAGCCCGCAGCGATTATCAGCGGGCT 3855695 28 82.1 0 ............GC.........G.T.C | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGTTTTTTCGCAATAAAATGAATATTCTCTTTAACAATCTGGTGGTTAGCGAAAAAAAGGAACA # Right flank : CTATCGAGATGCGTCGCTGGCGCGACGCATCTCGTGGGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCCGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTCAGGCTGTTGCCCAGCAGGCTGCCTTTCAGATGCGCGGGCATGTCGTCACTACCTTCATAAGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTTTCAAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCACCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //