Array 1 13959-14556 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000132.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1133638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 13959 25 100.0 39 ......................... CAATCTGTCTATTATTTTATCAACACGGGTTACATAAGA 14023 25 100.0 37 ......................... CCTCATCTCGCCACCCTTGTCCTCACAATTTCCTTCA 14085 25 100.0 38 ......................... ACTATTTCCTCCAGTTCCTTTACTCTGGGCAGTATATC 14148 25 100.0 37 ......................... TTGTAAACAGGTATGCTAGGTCAAGGATCATCTGCAA 14210 25 100.0 38 ......................... AGCAAGATCATGCATTCCTCTTTTTTCCAAGTCATTTA 14273 25 100.0 40 ......................... TCACCTATTACTATTGGAACCCCTTTCTCAGCGAGCTTCT 14338 25 100.0 41 ......................... AGATAGCCAGAAGGGTTGGGAGGATAGAGGAGGCTAGGGGT 14404 25 100.0 39 ......................... GCGTTATCGGATAAACTTCCAAGGTGTTTGAGCCTATGG 14468 25 100.0 39 ......................... GGGTGTATCCTTTACTGCCCAGACAAACTTCACCGTCTT 14532 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 10 25 100.0 39 GTCTCAATGCAAAGAGGATTGAAAG # Left flank : CGGCTGAAGATGTGAGGAATCCCTATGGTAGAGATGTTGGGGTAGATCATAACCTATTCAGCCTTGAAGAGCTAGTAGAAATGGCTAAAGAGAAGAAGAAGGAATATAACACCGAAACGCTCAAAAACGCTATTTTAAAGCTCCTCAGCTCCCTCTAAACCTTTTTTCTTTTTGTTGAGCATTACTTTTATAATGTTAAGCCTATTCTGAATTTTTAAAGTGAAAGTTTTTATTTAGGACGGTCTCTAATCTCAGAGGGTGATCTGATGAATAAGAAGATATTTGTTGAAATACCGAAAGGAGGAAAAATAGAGACTGTCGATGTGGATCCGAGTCTAGAAGGCAGACTCTGGTTCGATAACTCTGGCGTAGTTCCAAAATTCATCGTAGACAGAGAAGAGCTTGCAAAATATGTCGCATATCATCTAAAGTGCTCTTTTGAGAGAGCATTAGAACTCATAGATGCATACTTTGAGCTATTGAAAGAGAACGAAGTCGCA # Right flank : CATCAGGCAGCTTAACCTCATAAACCTTGGGCATAATGTCTCAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 943-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000116.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1230527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 942 25 100.0 41 ......................... AATTGTTTAGAGAAGCTAAGAAGCTAGGAGATAGGCTAGGT 876 25 100.0 38 ......................... TTTTTGTTTTCAGTTTCCTCTCAGCCTCAAGTGCTACC 813 25 100.0 40 ......................... AGATAGTAGCTGAAGGATAGATCATGCTCATTTGCTATTC 748 25 100.0 39 ......................... GGCTGGATTTCCTCTGGTAGAGTCTCCTATGCAGTCTGC 684 25 100.0 38 ......................... TTGAACATTATATACCACTACCGAGTATAAATTTTTAT 621 25 100.0 39 ......................... GCACAATAGGTCTCCTCTTCTCTAGGCTTATCTCCCCAT 557 25 100.0 37 ......................... TGTATTTAAATATGCTCTGGATTATGTAGGTGAAGAG 495 25 100.0 39 ......................... GCTTGTCTCTGAAGTTGTCTATCTGTCTGAAAAAGGCGT 431 25 100.0 37 ......................... ACAGCAGAAGCAAGATCCAATGCGGAGAAAGTCCTGT 369 25 100.0 41 ......................... TCAACTTCATGATCTCGACCTCCTATATGGACATAGAACAC 303 25 100.0 40 ......................... ATAGATGAGACAATCCTAACCGATAAGAAGAAACAACTCA 238 25 100.0 40 ......................... TCAAGGAGAGGAATCCAAAGCTGAGCGAGTTTTGCAGGAA 173 25 100.0 38 ......................... TTGTGGGTTTAGCTGAGAGCAAGGATCTTACCAAATCA 110 25 100.0 39 ......................... GTCAGCACGTCCAGCCTCACCGGCCCGGAGGAGTTTCCC 46 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 15 25 100.0 39 TTCTCAATGCAAAGAGGATTGAAAG # Left flank : GTTCAGCACAGAGCAGAAGATAGCCCTCTACGATCTGGCTGACATATATCCCATGTTCTCACGAGGCGGGGGATTTGAAATGTGCTCATTAGAGGCTTTGGCTAGGAGGGCTGTTGTAATAGCTCCTGAAGGCGGTTCATGGGCTGAATACCTTCCAAAATTTTCGCTTGTTAAATCCTACAGATGCTCTTATGTCCTTCCTGATAATCCCATACATGTAGGTGGTGGAGTGGAGATAGATGTTGATAAAGCTGTGGATAAGGCTGTTGACATAGTGGATGACCTTCAGGAGTACAAGCAGAGAACATGGGAGTATGTTCAGCAGATAAAGAGCAAATACAACTGGGATAATGTGGCTTTCATGCTAAAATCAGTAATTGAGAAGACCTTTAAATTAGATTAAGCTGTGGCTCAGAACAGGAGATCCCGCTATATTTAATGCTCTGTTTCTTTTCTCCTCAAAATTAAGATCGGTTATCCACACATCCGTGTAATCCGCA # Right flank : GACGATCAACTGGCAGGCAGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCAATGCAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 44-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000051.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1108339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 44 24 100.0 42 ........................ GGATGTATCTCAAATAAAGGCTAATGCTAGGAGGAAATACAT 110 24 100.0 35 ........................ CATGAAACTCCCCGATGAGGCCTAGGCATGGCGTA 169 24 100.0 39 ........................ CAATATATGCAATAGCAGGTCTCATACTGGCAGTTGTAA 232 24 100.0 40 ........................ CCAACAGTAGCAGTTCCAGCACAGCCTACCCCCCCTCCAC 296 24 100.0 38 ........................ GTCAGAGTCTCACTTCCTAAACCTTGCTCAATGCTTAG 358 24 100.0 39 ........................ CTTAGCCCATATCTTCACCTTCACTCCTGATGGTATCCT 421 24 100.0 39 ........................ CAGCTGGACCCTTGAGCTTCTCCCAGAGCCTCTTCTTCC 484 24 100.0 39 ........................ ACCATAGAATTGAACACAGCTAATTGGCTGGACGACTAC 547 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 9 24 100.0 39 GAATCTCACAAAGAGAATTGAAAG # Left flank : AAAGTCTCAACAAACTCTATCAGTCCCTCAAGCCTAAGCTCCTG # Right flank : GAGTGCTTTAAGGTTATCTGCTAACTTGCACTCAAGATCTACCACCTCATCATCCCTTTCCTCCAGTATCTTGTCTATTCTCTCCTCCCTCTCCTCCTCTATTTCGTCAATTTTCTCCATAAGCTTCTCCTCATCTTTTATCTCCTCCTTAAGAGCTTCTATTCTTTCATCAGTTTTCTCCTCTACCTCGGCAATTTTCTTCGCAGCCCTGTCAAGTATCTCGCAGTACTTCTCTCCGAACTCCCTAAAAATATTCTCCAAAAGGGGTACCGGACTTTTCAACTCATTTTTGCTCTCCATACTTCTCCCTCCCAACGGGGCTCTCCCTTTTACGGAAAGAGCCCCGATCAAAAAAATAAAAAAGAGGGATATAAATTTACTTCTCCTCCTCTTCCTCAAGCTTCTCTGCGACATACAGCCATATCGATGCATATTCCCTCAGAAGTCTTGCAACTTCATGTGGATTTACCTTAGTTTTCCTCATTTCCCCTACGGTCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCACAAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 28382-16166 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000025.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1097382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 28381 24 100.0 39 ........................ GGTGTATTCCTTAGCCTTTTCTAACTGTCTGACCACTAC 28318 24 100.0 41 ........................ GTTCTCCTCAACACGGCATTCTTCTATGTTGAAGAAGGTCG 28253 24 100.0 40 ........................ GTAAGGGGATAACTCCCTTTTACTGGCTATTTCTCTTATT 28189 24 100.0 40 ........................ GTGGCTATTATCCCCTGAATTAGTGCAACTAATGCAATTA 28125 24 100.0 39 ........................ GATTGTTGAGGAAACACTTCCATTTACCTTGTCAGCTTC 28062 24 100.0 39 ........................ GGTATTGCATTACCGATCATGGAAGGCACATTTTGTATA 27999 24 100.0 40 ........................ GGTTAATGCATATTCTGTAACTTCTGCTACTGCTATCCCC 27935 24 100.0 40 ........................ GTTGAGGTGAAATCCACCTTCGGACTTTTAGGCTCGAAGG 27871 24 100.0 40 ........................ GGCCAGAACCCTCTCGGACACGGAATCCAGCAGGTCTCTC 27807 24 100.0 40 ........................ GTATCACGATACAATGGAAATAGCTAGGATGGTGGGTAGA 27743 24 100.0 40 ........................ GATGTCCTCAATTATCTCCTGCAAAATATCCTCTGGAGCA 27679 24 100.0 41 ........................ GAGCTTTATACCTCTTCTCTATCACCTTCTCTATGTCCCTG 27614 24 100.0 40 ........................ GGAGCAACAGATCCGTGAACATCCCTCTGTTCGCCAACAC 27550 24 100.0 39 ........................ GATATACTTTACCGAGATCTATATATTAGGCTCGCCTAA 27487 24 100.0 44 ........................ GTTATGTCCTCAACGCAGGCCGTTATGTTTTCCTTGCACCTCCC 27419 24 100.0 40 ........................ GGTGTCTGCTCTACCCATGCTGCGAATATGTGCTTTTCAG 27355 24 100.0 40 ........................ GCTTGCGGGGACGGGGGGAGTGTGAGAGAGGCATGAGTGA 27291 24 100.0 39 ........................ GAGCAGCTTCTTGTATATCTCATCAGGTAGCCAGATCGT 27228 24 100.0 41 ........................ GACGCCACCGAGTTTGGGCCGCCGGGCTCCACGGGCAGGGT 27163 24 100.0 40 ........................ GTGATGCCCTTCTCTCCGATCTCAACATAACAGCAAATAC 27099 24 100.0 41 ........................ GGTCACCTTTTTTCTACCCTCCTTTAGCGCCAAGGCTTTTA 27034 24 100.0 44 ........................ GAGGTGGCAAATCCTCTGAGATCATGGGCGGATGAGTACGTTGA 26966 24 100.0 40 ........................ GCTTACGGATGTTGTGAGGATGATGATAAGGGATATGTTC 26902 24 100.0 41 ........................ GACGAGGGGATCTCCTCCTCAGCTTTTTTCAGCTCTTCTTC 26837 24 100.0 40 ........................ GATAATCCCCCTCCCGACAGGCCCTCAGGATATTCTCCCT 26773 24 100.0 41 ........................ GATAGCTGCAACAAAGGTTTCAGATCTGGATGGATCAGACC 26708 24 100.0 42 ........................ GAAAGTATTTATCTTATGTGCGAGGCAGGACACCAGTTTACA 26642 24 100.0 39 ........................ GTTATGTTCTCCTGCGTTCTTTTCTTAAGAACCTCCTCC 26579 24 100.0 41 ........................ GCTTTCTCTTTATATTCCTGTCTCTGTCAAACAACAATTAC 26514 24 100.0 39 ........................ GAGCCTATTTAAACCTTTCTCTCAAAACCATCAAGCTCC 26451 24 100.0 39 ........................ GCCTTTACCTTTTTCGTCTTCTCTTCCCCCCTTTGCTTC 26388 24 100.0 40 ........................ GTCAAGACAAATTTCCCTCCCTTTTTCAGCCACAAGATCA 26324 24 100.0 41 ........................ GGTATCAGAGGGTATATCCTCCATCAAAACTACATCATATA 26259 24 100.0 39 ........................ GTTAAGACTCCACGTTATCCTGTTATGCTCGTGCATGCA 26196 24 100.0 41 ........................ GATGAGAACATGAAGGGGATAGAGGAGGCACAGAAGCGGTT 26131 24 100.0 39 ........................ GGCCTCAGCCAGTCCTCGACATACCAGCAGTTCACCTGT 26068 24 100.0 38 ........................ GGGCTGAATGACAAAGTAGCCTATGTAGAGGTCAAAAG 26006 24 100.0 41 ........................ GTGCTCTCCCTTTTTGTATGGATCAGGGGAAACCTCCTTGA 25941 24 100.0 41 ........................ GTGAGAATTTAAATGACTTCTGCAAGAGGACTTTTGTATTT 25876 24 100.0 38 ........................ GGTAGGTAGGTTTGAATATCGGTTTCAGCCTGCACATA 25814 24 100.0 39 ........................ GTGCCGAGGGGCGGGAAGAGGGGCTACTTTCTGGCCTAC 25751 24 100.0 41 ........................ GTGACTGTTGAGGAGCTGGTGGATCATCTTATAAACTGTCC 25686 24 100.0 42 ........................ GCCCCAGCCTGTGAACCGGTTATTGCCGCTAGTATTATGCTT 25620 24 100.0 40 ........................ GTTTCTTAAGAACCTCCTCCACAAGGCCCTGAAGCTCAAC 25556 24 100.0 40 ........................ GTTATCATCTCAATGTCCTCCTTTGGCCCTTTCTCCCTCC 25492 24 100.0 41 ........................ GCCTCCTCCATCTTTTTCCTCCTTTCTTCCCTGATCTTCTT 25427 24 100.0 41 ........................ GTAACGCCCTTACTACATCTATTGCTTTTTCCGCCACTTCC 25362 24 100.0 38 ........................ GGCAAGCGATATAAGGCTAATGAGCTTGGCACTATGCT 25300 24 100.0 39 ........................ GACTTGGACTGTATCTCCATACTACTTATGGTTCAACAC 25237 24 100.0 39 ........................ GAGTGCGACTTCCCTCCCCTTGGTTATGTCCCCTGATTC 25174 24 100.0 40 ........................ GTAGAGGATCTTTCTGCCACTTTTGTGTGGCTAAATATAA 25110 24 100.0 40 ........................ GATTAAAGTCAGAATCTAGTCTCTTCATTCAATCACCTTC 25046 24 100.0 40 ........................ GATTATTATCCTTGTGGCACACTTAAGTTCCGGTGGGCAT 24982 24 100.0 40 ........................ GCAGTTTATTTGTTTTTTAGTCGAGGAGAAGCCCTCCTGA 24918 24 100.0 38 ........................ GTGCATACTGCAGAAGGATTTGTGAAAGAAAGCTCGTA 24856 24 100.0 42 ........................ GTAAGCATAACGGACAGGATCATCGAAAAGCTTCCGACACCT 24790 24 100.0 40 ........................ GGTTTTGAGAGATAAAAGAGAGGAATGGCTAGAAAATATT 24726 24 100.0 40 ........................ GGCCTTACTTCCTCCTCGTTGAAGGGAATATTGAACCTCT 24662 24 100.0 41 ........................ GGGATTCTTATTCCAGCCTTGAATCGGTATCAGCCAGGGAA 24597 24 100.0 44 ........................ GCTGCTATTCTCTCTCTGTCCACGATACGGTCGGTCTCTCCCTG 24529 24 100.0 42 ........................ GCTCTGATATCATGATTACCCGCTCACCCATACAATCACCTC 24463 24 100.0 40 ........................ GAAAATGAGGCTAAAGCCCTGTCTAAGACCGTGTAGAGAA 24399 24 100.0 36 ........................ GGTGCTGCAATAGCTTATGCTCTTAACAAAAATCAA 24339 24 100.0 40 ........................ GACCGGGAAAGTGACCCCCTACTGTATATGAACCCATCCA 24275 24 100.0 40 ........................ GGAATAACGACTACATGGAGATCACGCTGTTTCTCAAGAA 24211 24 100.0 41 ........................ GATGCTCAAAGGCCGACTTAAGGGTGCTTCTCAGCTCCTTC 24146 24 100.0 40 ........................ GTTATTCTCAACAGGTATTCGGCACACTTTATCCCCTGAA 24082 24 100.0 39 ........................ GATTACAGCCTATCCCTCAAATGCAACATTGGGAACAAA 24019 24 100.0 40 ........................ GTGTACATACTGGCCTCCATACTGGTGCCCCTTGTCCTGA 23955 24 100.0 38 ........................ GGATCCGTCCCGTTCCACCTCACTATTATTTTGAAGGT 23893 24 100.0 43 ........................ GTTCCAAACAGCCTCCTGAAGAACTGCGTGAATCCCGGCCCCT 23826 24 100.0 41 ........................ GGCACGGTTGGCCCAACGTCAAGCCTTATGCTCTTCCCAGC 23761 24 100.0 41 ........................ GTTGAGTCCTTCACAGTTAGGGTTACAGTTGAGCCATCCTC 23696 24 100.0 40 ........................ GTTAGGAGGTCTGGACATTGAAGATCACCTCTTTTTCATC 23632 24 100.0 41 ........................ GATAGATAGCACACCTACCTATCGCATCGAAAAGTAGTTGT 23567 24 100.0 38 ........................ GATGAAGACGTCGGACATGGATAGGCTTGTGCCGTTTA 23505 24 100.0 41 ........................ GAAAAGCTGGCAAAAAGAAAGGACACAATAGGAAAAAGGGC 23440 24 100.0 39 ........................ GAGAGAAACAGGGATGAAGTTGTTGGACAGTCTGCGCCC 23377 24 100.0 41 ........................ GAGTGCAGGCACTGGTAAACGACCAGAACAGGCAGTTTGTC 23312 24 100.0 38 ........................ GATTCTAAGATTATGTAATCACTGCTCATCTGTCCTGC 23250 24 100.0 39 ........................ GGTTTTAGCTCCTCATAGCTCTTCTTCAGCTGTTTTACC 23187 24 100.0 40 ........................ GGATTACGAAGAATGGCTCAGGATGATCTCTCTTGAATGC 23123 24 100.0 41 ........................ GTGAGAAGAGCTTGACTGCTACTTCCTTCTCTGGATCATAT 23058 24 100.0 39 ........................ GGGGGATGCCATCCCTTTTCTGCAAGCATCTCAAGCACA 22995 24 100.0 41 ........................ GACTATACGTTTCGCAATTAGACATTTTATCGACATATACT 22930 24 100.0 39 ........................ GTTCAGCCTGATTTCCAGATCATATGGGCCGACAAAAGG 22867 24 100.0 39 ........................ GACAGGGTGAGAAAATGACCATCCCCTTCCTTTCTTTTT 22804 24 100.0 40 ........................ GTTATTTTCGGCATTATTTATCCTCTGTATGGGCACTGGA 22740 24 100.0 36 ........................ GGGGAGGGGAGGTCGCCCCTAGGGGCCGAATCCCAA 22680 24 100.0 39 ........................ GTAGCCAAGTTCTACCCAAACGCTGTTAAAGTGATGCTT 22617 24 100.0 39 ........................ GGAATTATCCTGCAAGAACATCTTGACTAAGCTAAAAAG 22554 24 100.0 41 ........................ GGTTTATGTATTCAACTATCTCCCTGTTTTCCTCCATGAAA 22489 24 100.0 46 ........................ GATGACCCTATCCACACACCTCCTTTGCCCTCTCCCTCCAAGCTAC 22419 24 100.0 38 ........................ GGGAACATTGGCTGTGACAAACGGCCTTGCAACTCTGT 22357 24 100.0 37 ........................ GTCACCGCCTTCTTCCCCAGCATCCTGTAGAACTTCA 22296 24 100.0 40 ........................ GATTTCATCATAGTGGGACTCAATAAATACTGGGTTTTCA 22232 24 100.0 41 ........................ GCGACAACAGCGCACTTGCCCTCAATGAACCACATGCACCC 22167 24 100.0 40 ........................ GGTAGTCTTGTCAGCAGTCTGAAGTCCTGCAATGTCCTAA 22103 24 100.0 39 ........................ GAGGACTACGTGGACTTCTTCTATGAGCTCAGGAAAAAG 22040 24 100.0 42 ........................ GATTTTGCCCTTTTCCATCCCTATGCTCTTCCCGATCTCTTC 21974 24 100.0 39 ........................ GAGAATGCGATGGAGTTCTGGGGCTACAGCAAGGAATGG 21911 24 100.0 39 ........................ GACGGGCTTATCGCACACGTAAGGGTTTACAACAGGGCA 21848 24 100.0 39 ........................ GCCAAATCCTCCTCCGTTTCACTGGCTGCTTCAGAAAAA 21785 24 100.0 40 ........................ GGAGAGGGGAAGCACTGGAATGATGACATCAGGCTTGAAC 21721 24 100.0 41 ........................ GTAACCCTTTTTGGTGGGGGCCTTTCGGGGGGTAAAACCCC 21656 24 100.0 37 ........................ GGCAGCCTGTAGGCCTCCCTCTCGTTTCCGGAGTATA 21595 24 100.0 38 ........................ GATATAGCGGTAGCCCGATCACTATTGGGGAGAGAGAG 21533 24 100.0 40 ........................ GCTTATAGTCCCACTCATAACCACAGTTCGGGCATCTCAA 21469 24 100.0 41 ........................ GGGGTTAAAGCCACAGACTTCGAGACCCCCACTTTAACCGC 21404 24 100.0 41 ........................ GCATTGCGGGAGGGAGTACCCTCTTTCGGACAATCCTTTCA 21339 24 100.0 41 ........................ GTCCCACCGTCGCCGTAGGCGTAGAACTTTGCAACCCTCTC 21274 24 100.0 38 ........................ GTAGTAGAGGTGGTTTTATGGGAAAGCAGATAGTTGTA 21212 24 100.0 36 ........................ GTGCCAGCACTGCAATAAACCATATCGAAAGAAGGA 21152 24 100.0 39 ........................ GCGAGGCCCGAGAAGCCCGCAGGGTGCTTCCTACCTATA 21089 24 100.0 40 ........................ GACAATGCCTCTGCTCGGCTTTGTGTTCGCAGAGGGAGAC 21025 24 100.0 39 ........................ GTTTTACGGGTGTAAGGGTATCTGAGCTTATAAACATAA 20962 24 100.0 40 ........................ GCTCATATTCTCACTCCCTTTTATTGACCCCATAGGGGTC 20898 24 100.0 39 ........................ GTCCAAGGTCACGCCCGCACCTAATGCATAGCCTCTCAA 20835 24 100.0 40 ........................ GGAGTAAAATCTGACGAAAGCAGATCTTACCGCCTTCATC 20771 24 100.0 41 ........................ GCACAAGTGTGGACACCAGAGGTTTGGATGAGGTTCTGGAT 20706 24 100.0 39 ........................ GCTTCCCCCTCCTCCGCCACCCAAAAACATCTTCATAAG 20643 24 100.0 41 ........................ GCTGATACTGAGAAACTATCAACAATATCCCAATTCACATT 20578 24 100.0 38 ........................ GGGAATATGATCCTGAGAGTGGTCGGGTTCGGGGTTTT 20516 24 100.0 37 ........................ GGGATACAAGGGAATGATGGTGATTGGAGTAGTATCT 20455 24 100.0 42 ........................ GACAAATTCGGCGTGAGTATCTTTCAGGCTGTGGATATTGTC 20389 24 100.0 39 ........................ GTCTTCCAGTTATATTTTTCACAGCTATACTCTCTGTTT 20326 24 100.0 40 ........................ GACGACATTCCACCAGTCAGAAGTGCTCATTTTGTCTGCA 20262 24 100.0 39 ........................ GCTTCAAAGCCTTGGCTCTCAATTTCAGCCATTATTCTC 20199 24 100.0 39 ........................ GAATATGTACGCCTCGTTTGCATTTCCCCTGTCGTAGAA 20136 24 100.0 41 ........................ GGGTAGAAAGCGGAAGTACCTGCACATCCCAGTCCTCTTCA 20071 24 100.0 38 ........................ GGACTATCTTGTTACGGATGTATCGGCAATAGAGCTTA 20009 24 100.0 39 ........................ GGCAGGAGGAAGTTGCTAGGCTAAGGGCTGAAAGGGATT 19946 24 100.0 39 ........................ GAGTCTGGAGCTAAACCACTCGTTCCACATGAACAGATT 19883 24 100.0 40 ........................ GTTCTGCTTCTCCTCCTCATTCTCTTTTTGTATCTCATTC 19819 24 100.0 40 ........................ GCCCCTTGGGCAGCCTTAGCAACAGCCTTGTACACCTCCC 19755 24 100.0 40 ........................ TATCTTTGTGGGTATGTCTGCAACAGTATCGGTCATTATG 19691 24 100.0 39 ........................ TATGGGAGCCGGCCTGCTGGGTTTTGGAATAATGGACAC 19628 24 100.0 39 ........................ TATTTCTTCCGTTAATCCTTCCTCCGTTTACAGGGGGAA 19565 24 100.0 39 ........................ TAGGAAGCAGGCAGACATACAGATGCGTGTTCTTTCAAA 19502 24 100.0 39 ........................ TTGATTCCCCTGCGAACAACAGCTGGATCCAGTCAGACA 19439 24 100.0 40 ........................ TGTAATTCTCCTTCAGTATCCCATCCAGCTCGCAAATTTT 19375 24 100.0 38 ........................ TCCATAGTCAAAACTCCCCCCTTGAAATTATCCGCTGT 19313 24 100.0 41 ........................ TTATGCTACTGGCTCTTATGAGCCAACAGCAAAGGCAATAA 19248 24 100.0 38 ........................ TAGGTTTCCAAAAGATCTCCCTAGATATGCATGCTTTC 19186 24 100.0 39 ........................ TGGATCGGGCACCACACACACCCAACCCGAGGATGGGGG 19123 24 100.0 40 ........................ TATTTACTCTACCTTTCCCTGCTCTTTTGACAGCTGCAGG 19059 24 100.0 39 ........................ TGCTTAATCCGAAGGCATCGGGATCAATGTTAGATGGTG 18996 24 100.0 39 ........................ TTAGAATACCACCATGCATTATCTCAATGTCCTTGTACT 18933 24 100.0 40 ........................ TGATAAATCCGCAACTTCGGCTGGTGATACCTTCGCTTTT 18869 24 100.0 39 ........................ TTTAACTTCTTCGGGGCATAGGCATCTCACCATATATCC 18806 24 100.0 45 ........................ TAAGGGCGTGCAGTCGGTAACGCTCACGTTCCAGTACCGTCTCAA 18737 24 100.0 40 ........................ TTTTTATTTTTAGGTGGGGCCTCGTTCAGGGGGTAAAACC 18673 24 100.0 40 ........................ TCTCGTCAAAAATTACCAACTTGGCCCTCCTCCCAGAAGG 18609 24 100.0 42 ........................ TTCTGTCTTCTTCCTTTTTCTCGCTTTCTGCTTTCTCTTTGC 18543 24 100.0 38 ........................ TAAAAAGCCGGCAGAGAAGCACAAAAAAGCAAATAGTT 18481 24 100.0 38 ........................ TAGTGGTGCTGGTGCTCCTGATGTTACTGCTTTTTGAT 18419 24 100.0 39 ........................ TATTATTTTTCACGATCCGGGTTAGATAGAGAGAAGATC 18356 24 100.0 41 ........................ TCGCATTTTTGGCCCTTTTCCTCCTCCTGACTCCCGTATTT 18291 24 100.0 40 ........................ TTACTGGTGACGATGACTTTACTGGTGCGACAACCCTGTG 18227 24 100.0 41 ........................ TTATATAGTTGGTCAATGGATGCACTGGAAAATAACATTAG 18162 24 100.0 39 ........................ TATTATGAACGTTAGTTCATCGGCAATGTACCAGAGGTT 18099 24 100.0 39 ........................ TACTCCCCATTGCCCGTATTCTGTTCTTCCCGTGGCCCT 18036 24 100.0 41 ........................ TTTACCCCCCTAGCCCTGTCCACCTTCCTTATCACTATCTT 17971 24 100.0 40 ........................ TTTTCATACTTCTCACACTCCCCCCGCCGGCTCCGAAGAA 17907 24 100.0 39 ........................ TCCAGTTATTCGTGACGATGGACAAGACAAAGTGCATAA 17844 24 100.0 40 ........................ TCTCAGTCTCCTTAATCTCTCCTGCGAATGCGACAGTGGT 17780 24 100.0 40 ........................ TACTTTAAGAAGGTTCCCAGGCTCCTGATGGGCATTTGCA 17716 24 100.0 40 ........................ TCCTTTTCTTCATTTTTACCGCCTTTTCCTCCTTGTTACG 17652 24 100.0 40 ........................ TTCTTGAATGGCTTTGTATGTGGCAAGGACAAATATCCCC 17588 24 100.0 40 ........................ TACAGCTCTCCGATTGTATCCAGGACACCTAAGCTCAGAG 17524 24 100.0 39 ........................ TTGATGTCTCATCATCACCAGCAGCCATAGCCCTAGCTT 17461 24 100.0 40 ........................ TATTGTGAAGTATCAGGCTAGCTTTAACGGCATTCTTATA 17397 24 100.0 40 ........................ TTCAGGTCTGTGCGGAGAAGGGAATAACAAGCTTAGGCAA 17333 24 100.0 43 ........................ TGGCTAGACCACTGGGGAAGGCAAGGTTTAAATAGAGAAATAC 17266 24 100.0 40 ........................ TTAGCCTTTTTCTCAAGATCCTCCATTTTCAGTCCTCCCA 17202 24 100.0 40 ........................ TGTAAGGTTCAGTACTCGATAACAGTACTTCCAGCTGTTG 17138 24 100.0 39 ........................ TTTCCAGTTCCTCAATATACTCCCTGATCTTTCTATCCA 17075 24 100.0 40 ........................ TGGATTACCCTCAAAAGGAAACAGAACCTCGTTCGTGACT 17011 24 100.0 40 ........................ TTTAAGGAATGTGAACACCAGCCCTCTTGACGGCATTTCA 16947 24 100.0 38 ........................ TTTTACAGCTGATAAGATCTCATCCTTTGTCATCTCCT 16885 24 100.0 39 ........................ TCAGAGGACGAATTCAGAGCGTTTATCACGTATTACGCA 16822 24 100.0 39 ........................ TCATAAAACAGGCCTTCACTCTCCACACCAACCACCTCA 16759 24 100.0 37 ........................ TGACAATTCCCTTTTCGTAATCAATGAGATAACACTG 16698 24 100.0 39 ........................ TATTTCCTTCACAGAGCCATCCGAGAAGCCAAACAGCAC 16635 24 100.0 39 ........................ GTAAATATTTCGCTGGTTTCCAAGAAGCCGAGGTAGTGT 16572 24 100.0 41 ........................ GCAAGGAGGAGCTGAAGGAAGAAGGATTTTCGTGGACTGGG 16507 24 100.0 40 ........................ GATTTAAAATTAAAGCAAAGAATGTGATGAACAAAGCGAT 16443 24 100.0 38 ........................ GTTAGATTATCAGGTGGATGCCTCCAGTCCATGATCAT 16381 24 100.0 40 ........................ GTCTGGTATCCGATGAATATGGATATTTACATGCAATTGG 16317 24 100.0 40 ........................ GGTATACCTCTCACATCGTTCAGCACTTCTATCCCTTCTT 16253 24 100.0 40 ........................ GCTATTGCCTCGCACTGTATGTTGAACTTAGCATCTCTGT 16189 24 91.7 0 ...............TA....... | ========== ====== ====== ====== ======================== ============================================== ================== 192 24 100.0 40 GTCTCAATGCAAAGAGGATTGAAA # Left flank : ACTATTAGTTTTTAAATTAGAAGAAACTAAATGCATTTTAGAATTCATTAATGAAATATCCCGATCACTGAATAAAATATTTCTTAATCGAATATTTTTTACTTTCAATCCTTTCGAGAAGATATACCAATTGTCCTCAACAGCCTGCTCTTAACAGAAGCTCGCTCCTCAATGATCCCTTCATCAAATAGACGACGTCAAACTCTCGTTATTTTCCCTTTTATCTTGTTATTAACTTGCTTTTTCTACTTTCTTCCATCATAGCAGGAAAAACTATGTTATGGAATTTTTAATGGGAGCTCGATGATATGACCTTTCTCGAACATTTTGGTTTTTCTGAATATGTGAGAAGGGAACCTGAATGAAAGTATATAAATTTTTCCTCGAACATTTTGAGAATTGTTTTTAAGGTTTTTCCTCTGTCATCAGTGTTCGAGAAAGGGATCTGTGGAAAGGATTAAATAGGAGCCCCTCGTCATGAATAGATTGTTAGAGTACAC # Right flank : GCGATTACATTGTCTAATTGGATGCCCCCGGCCCCTACTGGGATATAAAGGTATACAACTGAGTGAGGGAGAAGAACACGTATGAGCTAGTATTCTCCCTGAACAAGCTTCCGGAGCTCTCAATTGAATAAAAAAAGAAATATCTAAAGCTAAAGCGGTTTACTCACAGTACAGGCTGATTTAAATCACATAAGCAGCGAAGATAGCTAACTCCACAGCTTGTGGCAACTTTAACCTAAACACTTCCCTGTTATCTCAGGGAATTTGCGCCGGAGGAGAGTTAGGTTTATTAAAGCATTCTGTTGTGCCTTTTGATGGAGGGCATTTCCAGTTCCCTAGCTGATGCTGCCAGAAAGGCTGTTCTGGATGAGTACAGGGAGTATGTGACATACGGCATCTTGGCCAAGCTGGAGCGAAACGAAAAAAGAAGAAGGATCCTTGAAACCCTCTCCTCCCAGGAGCTTGGGCATTTCCAGTTCTTAAGCAGGTTTGTTGAAGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCAAAGAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 30-9757 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000081.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1122540, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 30 25 96.0 37 G........................ CCTTTAGAGCATCCACATTTATGATCATCTTTCTCTC 92 25 96.0 37 G........................ ACACAAGGATCACCCTTACATTTCTCCTGTGCCTGAA 154 25 100.0 39 ......................... TGCTTTGGGAGGGGAGGGAGAGGAGGGGGGAGAAATTTA 218 25 100.0 39 ......................... CTATTTTTACCTCTGAAACAATTCGGTTGCTCAACACGT 282 25 100.0 39 ......................... TTGTGTCCGATAGGACTGCTGTCTCACCACAGCACCTGC 346 25 100.0 41 ......................... GCGAATATGTTTATCGACTCGCTACCGTTATAAACCCACGT 412 25 100.0 38 ......................... CTGTTGCCCTGTTCGCCATCTACGAGGGGCTGTACTAC 475 25 100.0 36 ......................... CTATATTCCCACCTCCTCAGATAAAGTGGAGAAGTA 536 25 100.0 39 ......................... TTCAAATATGCTGAAGAAGTTTATTGAGTAATATCTGTT 600 25 100.0 40 ......................... CTTTGTGAAGTATATGGCACATTGAAGGATCACCTCTTCC 665 25 100.0 38 ......................... TACATACCTCTGGAGCTCAGGGTCTGCTCCCTCCCCTC 728 25 100.0 39 ......................... TGTAACAGATTTTTGGGTGTCATCAAAGGCTACTATGGT 792 25 100.0 39 ......................... ACAGATTTGCCTTCCTCAACAGCTTTCATTATTACGGGA 856 25 100.0 39 ......................... AGAACATGATACCTGATTTTAGTTGCGGTAATCCAAACA 920 25 100.0 37 ......................... TAAGTGTCCTATATGTGGAGAATATTACACTTATATT 982 25 100.0 41 ......................... ATATATGCTAGGGACTCCCAACCTTCACCTTCTACCCCCGT 1048 25 100.0 39 ......................... TATTTATCGCTCAATCTCAGTTTATCTTGGAAATATTCC 1112 25 100.0 41 ......................... TGCATTTTCACAACAGCCACCGAGAGCACCAAAGTTGCCGT 1178 25 100.0 41 ......................... CTTTATCGATAGACATACCATATCGATCGCATCTCACCACT 1244 25 100.0 38 ......................... CTTTATCTCCAGCTTTGGAAGTTCCTTCTCCCCCAGGT 1307 25 100.0 37 ......................... CTTATGGCAAAATATCGCACTAGAAAGTTCTCGTCCA 1369 25 100.0 38 ......................... TGTTGCTGGTGTTCCTCCTGCCCCACCACCACCGCCGC 1432 25 100.0 37 ......................... TGTTGTTATGAAAAAGAGAGAAAAACCAACAGATGAA 1494 25 100.0 39 ......................... AAAACGTTTCGAAATCCCCCGTGTTGTCCCAAAGCATGT 1558 25 100.0 39 ......................... TCTGAATTATATTGCCACCATTTTTGTGGAATAGCATCA 1622 25 100.0 38 ......................... TTTCAAAAAGGTAATCATCCGCCTTCTTTATGAGATCC 1685 25 100.0 40 ......................... CTTTTTCCTCTATCATATCACCACCTCGTTTTTTAGGCTC 1750 25 100.0 37 ......................... AATTTTCTATAGTAGTCCAATATGCTGAATGAATAGT 1812 25 100.0 37 ......................... CTCAGACCCGTTCGGTTTGAAAAGGCCGGGAGTGTGA 1874 25 100.0 40 ......................... ATCTACCTTATACTTCTTTCTAGGGATATAAGGTGGTTCA 1939 25 100.0 37 ......................... CAAATGACATTAGTGTCTGATTCTAAATTGTATATAA 2001 25 100.0 36 ......................... ACGTATGTGTGCCTGCTGTGGCTATTGATATCGTAA 2062 25 100.0 39 ......................... CCGTGACAAAGTAGACCTTCCTGTTCTTTATATCCACAA 2126 25 100.0 40 ......................... ACATTATTGCACTAATGTAAAAAGGAGGATTATAAAAATG 2191 25 100.0 39 ......................... TAAGATCCCTTGACCCTAGCTCTTTCGAGCTTTCAGAAT 2255 25 100.0 38 ......................... ACGTCTTTGCCAACTGTGGCATGGACAGGGTTTACCGA 2318 25 100.0 39 ......................... ACTCCCCTGAAGTTCACCAGATATGAGCAGTACCTGATT 2382 25 100.0 39 ......................... TTTCTTACTTTTTTGTTATTGCTTTCCTAATTGTTGTGT 2446 25 100.0 41 ......................... GTGCAGGGTTTCCATTACAGTTCTGGATTCAGACAGTTTGC 2512 25 100.0 39 ......................... ATGTAGAACATCCACTGTGCCGATGTTGTTGTGTGTCCA 2576 25 100.0 38 ......................... CTGTATTTTTGAACAGATTGTAGAAAGACCACATCCAA 2639 25 100.0 41 ......................... TTAAGCTCCTTGAAGTTTACGTTGTAGAAGCCATCGCTCGT 2705 25 100.0 40 ......................... CCTATTTCATGTTTGTGTATATTATTGCCATCATTGCTAT 2770 25 100.0 40 ......................... CTAAGGCAATAAAAGAGGGCGATATATACGACGAAAGTGC 2835 25 100.0 40 ......................... TTATTACGTCATTGAATGGCTCTCTAGGATGCACCTTCGT 2900 25 100.0 38 ......................... TACCATATACACTCCCAACAACTCATCCAGATCACCTT 2963 25 100.0 38 ......................... ATCCGACTTTGTCTGTCCAATAGAAAAATCGCCTCAGT 3026 25 100.0 38 ......................... CCTGTTGTTCACGTCTCTGTATGCGTAAGCTAAGCCAA 3089 25 100.0 35 ......................... CTCTGGGCGACGGCGCCACGGTGCGGCTGTACAGG 3149 25 100.0 39 ......................... CGCCGTACCGCTTCGTCCCAAGACTCTTCTCTGGGGCAC 3213 25 100.0 41 ......................... TGAGGGGAGAAGATCCATAATCCCAATCTTCTTTATTTTTT 3279 25 100.0 40 ......................... GTCCTTCTTATGAGAGCTTATCAATCTACATCCGGCGCTT 3344 25 100.0 40 ......................... TAGAAGTTTTTGCAACCAAGCCGGACATGTGCGCTCACTC 3409 25 100.0 40 ......................... GCTTCAGTTGCCTCAGCCTTTTCCTCCAGAGGCATCTCCT 3474 25 100.0 39 ......................... TAGCCTCATAGGGCGTGTCGACGTGCAGGCACCCGTCAC 3538 25 100.0 39 ......................... CTAGGTATCTGGCCTCAGCTGCCGCCCTCTGGAACATGT 3602 25 100.0 37 ......................... ATAATCTCCGCAGTTGCTGCTTTGATAACAGCGGTGT 3664 25 100.0 38 ......................... AAAGGTACGAGCAACTGAGAAAGGTAACCGAGGGATAC 3727 25 100.0 38 ......................... TCTATATTTCCATCCAGATAACCAAGGAATATAGGACA 3790 25 100.0 39 ......................... TCGCCGATCCGAGGAAGTAGATCACCTGCCCATACCTCC 3854 25 100.0 39 ......................... GACTATGATCCTCATCTAATCACCTTTCTTCTTGGATAA 3918 25 100.0 36 ......................... CTTACTTCTTTCAGATATGTTTGAGAGAAAAGGGAA 3979 25 100.0 40 ......................... GGGTTCCGATTGACCCCCTCAGGGTGATGATAAGGAACGT 4044 25 100.0 40 ......................... TTTTTGCTATGCATTTCGCTTCCCATCATCCTGCATCCCC 4109 25 100.0 38 ......................... ATCCAGAGTTCATTCCAACCGGAGCCGATAATCTTTCC 4172 25 100.0 39 ......................... TTCAGCCGGAACTTCGCTGAACACATTTGATGGCGGTGC 4236 25 100.0 40 ......................... AACCTGAGGAGATCTATTTTGCTAAACCTATATCCCAGCT 4301 25 100.0 43 ......................... GACAAACTTCCCCTGTCGGTAGGCTACTGGGTCTATGGCACGT 4369 25 100.0 39 ......................... CCTCATCGCCACCCTGATTACGGTGGCCTACGGCGTCGT 4433 25 100.0 40 ......................... ACGTCTACACGACAGGGTTCATCAAGCCGGTCGTGGAGCT 4498 25 100.0 40 ......................... AAGTCAGTATGCCCGCTTGGTTGAGGTAGTACAGCCCCTC 4563 25 100.0 41 ......................... ATGAAGTCTCAGATAGTCATCTAGATCTGAATAGGATATGT 4629 25 100.0 37 ......................... ACTATGTCCGACACGTCCTCCTCACCTACTGTCTTCT 4691 25 100.0 39 ......................... TTATTCGAATAGCCAATATTATCGTCCAGCCTGATATAA 4755 25 100.0 37 ......................... CTTTTTCGGCTTTTTAAAGACACTAGGGGTAGGTAGG 4817 25 100.0 39 ......................... TTAATGAGTTTAAAAAGTTGTTTATAGCATCAGAAACTG 4881 25 100.0 40 ......................... CCACAGATCGGGCATTTGAAGTAAAATTTGAAGTGTCTTC 4946 25 100.0 39 ......................... CTGTAACCTTCTCAGCTGCAAACATGAATCTAGGCAACT 5010 25 100.0 38 ......................... GTGCCCATACTGCGGCGAATATGTTCCCTATGGTTCCT 5073 25 100.0 43 ......................... TCTTGATCCATATATATATTGAGGCAGGGACATCAAGTCCCGT 5141 25 100.0 38 ......................... TCAGGAAACACCTCCCTCCTTTTTCAACAAGGAAAAGT 5204 25 100.0 39 ......................... ACAGCGAGCACGCTCCAAACGGTCTGGGATATGTTGCCC 5268 25 100.0 39 ......................... CCTGTTATGCGATATGAATAGCCTGCATAGGCTGAATAA 5332 25 100.0 39 ......................... TTGTGTTTTTAACAGCCCTCTCAGCCTACTCAGATTCCC 5396 25 100.0 38 ......................... ACATGTTTGCCAGAGAGCTCCTTTCATGTAAAGTAAAC 5459 25 100.0 39 ......................... AGGATCATGTAAAAATGCGGGATCAAACGGAGAAACGGA 5523 25 100.0 39 ......................... TATATATCTTGAGCTGTTCCACGTGGTGTGCCTGTGGGT 5587 25 100.0 36 ......................... CTGTTGATGAGAGGAATGGAGAGGTTGTAATAGCGT 5648 25 100.0 37 ......................... TTGCCATTGCCCTGTTTCTGATTGAGCTGATTGAGGA 5710 25 100.0 38 ......................... TGAATCAAGAAGGAAATATACTGCGATATGCTCATTCC 5773 25 100.0 42 ......................... ATTAAGGCTGTTGAGGGAATAGGAGAGTGCAAAAAGATATAC 5840 25 100.0 39 ......................... CGAAATGATCGTAATCCCTCATGTGCCTTACTAAGTTTT 5904 25 100.0 38 ......................... AAGGAGGGATGATCTAGAATGGTCAGCACAGAGATAAT 5967 25 100.0 39 ......................... AAATATCCCTTTTTCTCGAGATTCTCTAGATGAATTTTC 6031 25 100.0 39 ......................... GATAGTAGTAGTTTTCTTTCTAAGATACTGGCTGTCTCT 6095 25 100.0 39 ......................... GTTTCAGCCTGCACATAGTAGTGCACGCCAAAGTCAGTT 6159 25 100.0 40 ......................... ACTCAAAGTGAAAAGCCTCGTCATCGTTGCATGTCCTTTC 6224 25 100.0 40 ......................... ATAGGAGCTAAGAAGCTGTTCAAGTGCATCAGCGATAAGT 6289 25 100.0 40 ......................... GCATAGTTTACAACAGCAGATACTGTAACACCATTATAAT 6354 25 100.0 38 ......................... TCTTCCTGAACACAGCAAGGTAGATTATCCCAAGAAGT 6417 25 100.0 38 ......................... TCAACTATTGTTAAAAGGTCTTTTATCACGTCCTCATC 6480 25 100.0 37 ......................... TGCAGTTGACAGCCTTCTCAAGGTCTTCAAGCTCATA 6542 25 100.0 38 ......................... TATGGGCCGACAAAAGGCCCGTAAACCCTGAATCCCGA 6605 25 100.0 38 ......................... TTGATTATCAGCCTGTACAGCCTTGCTTTCTGCGATCC 6668 25 100.0 38 ......................... CCAAGCTTCTTTATTGCCCACTCCTGAATTCCCGCTAT 6731 25 100.0 38 ......................... TGTATTTAAATATGCTCTGGATTATGTAGGTGAAGAGC 6794 25 100.0 37 ......................... TAAAGTTGTTCGACTCACCTGCCGATATGAAGAAGCC 6856 25 100.0 40 ......................... GAAAAGAATAAAGATAACGTATGCAACAGGAGCAGCTTCT 6921 25 100.0 40 ......................... AAGTCAGCATCAGTGTAGCCCATCTTCTTGAGCTTAGCCC 6986 25 100.0 38 ......................... ATTCTATTTCCTCCTCTTCAACTTTTTCCTCCTTCTTT 7049 25 100.0 39 ......................... TCTTGTCCGGCGCCTCCATCAGCAACCTGTAGGCCTCTT 7113 25 100.0 47 ......................... AGTGTAGCGCTCATTCGCTCTCTCCAGGATTCTCCTGATAAGGCTCT 7185 25 100.0 37 ......................... AGTGTAGCTTTCATCCTTTCGGGCATCTTTGGCAGAA 7247 25 100.0 38 ......................... CTTTGCATTCTCCTCATACCTGTTGAGCATTCTTTTGT 7310 25 100.0 36 ......................... TGATCATCCCATCCTTCATACCTCTCCCTCCCAAAC 7371 25 100.0 37 ......................... GTTGAGGAACCGGTGCAAGTTTTTGAACTCCCCAAAC 7433 25 100.0 42 ......................... TTTATTATCATTCCTAGAAAGCCCAATCCTGTTAGAATAGGT 7500 25 100.0 39 ......................... CATCGTGAGCGGGGCAATGCAGATCTCTTGGCAACGCTT 7564 25 100.0 38 ......................... GTAATTTGGTCTCGATTATAGCTCTCTTAACCTGATCA 7627 25 100.0 38 ......................... CTTCGCCCTCTCTATCCTCCTGAGCAACCTTATCGTCC 7690 25 100.0 41 ......................... GTTAAATCTCCTGTCCCACGTCCTTACCTCGTACATCACAC 7756 25 100.0 37 ......................... TGTGTTAGGTAAGGTAACATTACCTATTCCAGAGATA 7818 25 100.0 39 ......................... TTTCCTCTATTTTGCTGTTATTTTCTTTTTTGGATGTTG 7882 25 100.0 38 ......................... CCATGGTGAGGGGCGTCCTGACCGCTATCCACCTGTCC 7945 25 100.0 37 ......................... CGCATCTGCGACCCTCTCCACGTCCTCTGGGCTCCAC 8007 25 100.0 39 ......................... TGCTGTACCTTCCGGTCTCGTAGTCCCAAACTATGTGGA 8071 25 100.0 39 ......................... ACCACCCGAGGTTATCGTGGCCGGAGGACTTCTTTCCGC 8135 25 100.0 40 ......................... GTTGGTTCTCCCAGCTGGCTTTTCACATCCTGCACCACGT 8200 25 100.0 39 ......................... CGAAAAATATTCCTGGATTGTCCAGATCCCCGACTGTGC 8264 25 100.0 38 ......................... CGAAGGTGATACCCCTCCTCATAGGTGCGGCGTACGCA 8327 25 100.0 41 ......................... CATCTGGCTTGGTTCTGTGTGCCATTACAGTGGCATATGGT 8393 25 100.0 39 ......................... TCTAGGGCAATAGCTTCGTTCTACTTTTTATCTGGGTAT 8457 25 100.0 38 ......................... TTATCTCAGCTATTATGTCTTTTGCTGAAAAGAAAACA 8520 25 100.0 39 ......................... GATACCCACAATCTCCTCTATGCTCTTCACTTTGAAGGT 8584 25 100.0 41 ......................... GGGTAGCCAAAACGGGCACTACAGGGAGTAGGGCTAGCAGT 8650 25 100.0 39 ......................... ATAAAGCGGATACTGTTTCATAATGGGTAAAGCTTTGGG 8714 25 100.0 39 ......................... CAAGTGCCTTTATTCTGGTCTCGCTCATCATGAGTAGTA 8778 25 100.0 39 ......................... TGGTTGTTGCCGTGCTTCCCGCCTTCGGGCAGGAGGTTC 8842 25 100.0 39 ......................... TTGCCAGCCTGAGGCAGTACCTGAGGTCGTCCTTCTTGT 8906 25 100.0 38 ......................... TAGGTGCACAACCTCAGATCCTCATGGTCTCTGCTTTA 8969 25 100.0 38 ......................... TCTTGATCTGTCGTTTTGTTCAAGATCTCTACATATCT 9032 25 100.0 40 ......................... AGACTGTCGGTTTCCTTCCGAAGCCTGTGTTATACTTTAC 9097 25 100.0 38 ......................... TTTTATTGCGACGGAAACAAAAAATTTTTATTTAAGAC 9160 25 100.0 39 ......................... CTTTCTGCTTTCTTACTTGCTCATACTCAGCTTCTGCGT 9224 25 100.0 38 ......................... TTCTCGTGGTAGTGCGTCCAGTTGGACACGAAGTTGGT 9287 25 100.0 38 ......................... ACAGGTCGTCCTACGACCCGCTCTTCTTCAACCTCACG 9350 25 100.0 38 ......................... CCACAGTCATCACAACCCTGCCCGTGGAGCCCGGCGGC 9413 25 100.0 39 ......................... GTCCCGGCACGGGTTATTTTAGTCGCACCACCCGCAGAA 9477 25 100.0 40 ......................... CCATCGTCTGAGCTAGAGGAATTGGATCTGATTCGTTAAA 9542 25 100.0 37 ......................... GCGAGGTGTTAAGCGATGCCAAGAGGCTGAGGAGTTT 9604 25 96.0 41 G........................ GTTGTGCTACCCTTACGCCCTTTACTGCAACGAGGTAGACT 9670 25 96.0 38 G........................ AAAAGCTCATCATCCTCAAAACCATCCGACATAACACC 9733 25 84.0 0 G.....................GGT | ========== ====== ====== ====== ========================= =============================================== ================== 153 25 99.8 39 TTCTCAATGCAAAGAGGATTGAAAG # Left flank : TATATTATGGCTGTATGCATATCGGTAATG # Right flank : TAGACATAATATTCTCAATGTTTGGAAATATAACATAAAGGAAAAGATCTGCCTAGAAGTGAAACAAATAGTGTACATATTTTGGAACAAATAGTTGAATAGAAAACTTTTTATTTTTCCTTATGATATCTTCCTGTGCTCTATGCAAGGGGGTAGCCTAATGAACATTCAAACATGTAGTAGAGGTGTTCCGTATCTTCTTTTTGCTGTAACTCCAATTCATGCAGGAACTGGGAAAGAAGAAGGGGAATACGTGGATCTTCCAATTCAAAGGGACTTTTTAGGTCTTCCAGTGATCTGGGGGAGCAGTATAAAAGGGGCTCTTAGAACTACTTATAGGATCAAAAAAGCCGAAGGAAGCTCTGGAGGAGATATTAGTAAAGCTTCAGATGAAGAAACTATCATATTCGGACCTGAAAGAGAAAGGGCGCATGAGCATGCGGGGTCTCTTCTAGTGACTGATGCAAAATCCTTCATAGTACCTGTACCATCATTAAGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCAATGCAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 9392-2962 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOS01000085.1 Candidatus Methanodesulfokores washburnensis strain MDKW Ga0080004_1124057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 9391 25 100.0 40 ......................... TCGTTTAAGTCAGCCCAGATTTCCTGAGTTCAGGAGGGAA 9326 25 100.0 40 ......................... TTTCTTGGCTACTTCCCAAAAGGATTGGCAACTGATTCAA 9261 25 100.0 38 ......................... TGTCTTCTCATTCACTATTATGCTGTGGATTGTGTAGG 9198 25 100.0 38 ......................... AATCACCTGTCCCCTCATCATCCCATATGTGGTACCAG 9135 25 100.0 41 ......................... GTGAAGAGAGGATAACTAAGAGAGAGAGGAGTGTGTGTATA 9069 25 100.0 39 ......................... TTGTATCGTAAATTGAAAAGAGAGGCATCAAGGCAGGTC 9005 25 100.0 38 ......................... TGAAAGTGTAATAGAGAAGATGGTTGAGGCAAATAGAA 8942 25 100.0 40 ......................... CAGACCCGTTCTCTGGAAGCGAGAAGCTTCTGGGGACGGG 8877 25 100.0 40 ......................... GCCAATGCCACCTCTGGGTCATTGGGGATGAAGAGCTGGA 8812 25 100.0 39 ......................... TGCAGACCTAAGGATCTTTTGCACAATTCCAGCAAATCT 8748 25 100.0 40 ......................... AACACGCCTTTTGCTCTCATCACATTCAAGAATGATTGAT 8683 25 100.0 39 ......................... AGGACAGCTCAGTTTAGCTCATAGTTTTAGAAACGTTAG 8619 25 100.0 38 ......................... ACTTCCATGCCCTGTATCACAGCTATTCCATCGGCCTG 8556 25 100.0 39 ......................... CTGAAGTCCCAGTTTCCGTTATCTCTTTTATTCTCATGT 8492 25 100.0 42 ......................... TTTCAGACAACATTAGTTTTCTTTCTAAGATACTGGCTGTCT 8425 25 100.0 39 ......................... GAGGAGGTGATTTAGATGGACTGGGTTCAAATAATTCTG 8361 25 100.0 39 ......................... CCTAGAGCTTTACTTATGCTCTCGAAGTCCTTCTCCTCA 8297 25 100.0 41 ......................... TTCCTCCTTCAGCTCCTTTTACCTGTGATCGCTTCTCAAAA 8231 25 100.0 41 ......................... TAAGCGCAGCGAAGGCTTTCTCAGTTCGTTTACCCTGACCC 8165 25 100.0 38 ......................... TCGAGATAGGGCTGGGAAAAGGGCTAAGCTGAAAAAAA 8102 25 100.0 40 ......................... AAAGAAGGTGTATATATGTAGGCATCCCGCAGATTCACGC 8037 25 100.0 39 ......................... AGTCCTCCTTCATCGGGGAGGGCCTCTGGTATATTCTTT 7973 25 100.0 38 ......................... TTATCACATTTTGCAGGTCAGCTGTTGTCTGCACATCA 7910 25 100.0 38 ......................... GATTTTGAAAGCTCGAAAGAGCTAGGGTCAAGGGTCAT 7847 25 100.0 40 ......................... GTATTCCATGTCTCTGATATTTCATCTTTTTTAGATAGAG 7782 25 100.0 41 ......................... AAGCAAATTTTTCTTATTGCCCTTATGGTGTCGATCATTAG 7716 25 100.0 39 ......................... CACTCTTACAAATGTAAACAATCCTTTTTCATTTTTCTC 7652 25 100.0 40 ......................... TTTCTGAGACAAACTCTACATAATCTATTTTATTTATTGG 7587 25 100.0 40 ......................... TCCTGTGAAAACAACAGGTGGCTTTTCTTTCATTAAAACT 7522 25 100.0 38 ......................... GGTAATCCTCCTTTTCCATACAAGCATGTGCATTTATT 7459 25 100.0 38 ......................... GGGGGTAGACTCATGGCGGTGAGAAAAGTGAAAACCCC 7396 25 100.0 38 ......................... ATAAAAAGCGTGTCTATATACAAATTCACGGCGAGCGG 7333 25 100.0 38 ......................... TGCCATATAGAAGTAGGCGTTAACTTTTTAAGCGAGAC 7270 25 100.0 39 ......................... CCTGATCATAGGCACTTTTGAGCTGATTTACATAAGTAT 7206 25 100.0 38 ......................... AGGTGCCGCATTGGGTGGAATATGGGGAATAGTGCCTA 7143 25 100.0 39 ......................... TGTTTTAACCTCCTTTAATTTGAAATTAAATCTGAATAA 7079 25 100.0 37 ......................... GTTGTTTTTGTGTCCTTTATGTCATTGTAGACGTTCA 7017 25 100.0 40 ......................... AAGTCAAACCTGATATTGAAAAAGAAATTTAATTTTCCTG 6952 25 100.0 37 ......................... AACCGGTTATCCCGGTCTGAATTTGAGAACCATCACT 6890 25 100.0 38 ......................... AGATCCTATTGCGATTGCTGTAGGCCAAAAGATGGGGT 6827 25 100.0 39 ......................... ACAGTCAGGAACTATTATTTTTCCTGTGAATACATAAGT 6763 25 100.0 41 ......................... TTTTTTATCACTTCTTCTTTTCCATCCTTTCTCTTTATTCT 6697 25 100.0 44 ......................... CATTCAAACTCCCAGTCCCTCCTCGATAATATTTTGAATCCAGC 6628 25 100.0 37 ......................... CCCATTTTAAGCTTGAATCCTGCTGTTATCATTACAT 6566 25 100.0 39 ......................... TTCCCAAACCAGCTGTATTTGTAGTCTACGTAGCCAATT 6502 25 100.0 38 ......................... AGTATAATTCTTCTCGCATATTATTGTCATATTCTTAA 6439 25 100.0 41 ......................... AGCTAACATCCTCTATCGATTCTCCTCCCGGAATCGGCTCC 6373 25 100.0 39 ......................... CCTTTGTGGTGATGCTGAACCAGTGAGGTGATCCCATGA 6309 25 100.0 39 ......................... TATTGTTGATGCATCAATGAACTCAGTTGGTGCTGGAAG 6245 25 100.0 38 ......................... TGGTCAGGTGGTGATCCTGACAACGATCCCGTAACATA 6182 25 100.0 38 ......................... TCAAGCAGGATGCCGTATGGAGCAAGTTTGTGGCTATT 6119 25 100.0 37 ......................... AGCTGTGGCTGATGCCATGGATTAAAGTCCTCTCCCC 6057 25 100.0 43 ......................... TTGACTGTTTTGATAACATTTACAGCAACATGTTTCACTTTAA 5989 25 100.0 37 ......................... CAGATAATAAAAAGCAGGGGAATGCTGAAATCAAGCA 5927 25 100.0 36 ......................... ACCATACACGACGAGAGGAATAAAAGCTGAGATAGA 5866 25 100.0 38 ......................... CTCCCATACCTCTCCCTCCCAGCGGGGCCCCCCATTTT 5803 25 100.0 37 ......................... TTCTTGATCGGGGCTTTATCCCGTAAAAGGGAGAGCC 5741 25 100.0 38 ......................... CGTTATTCCTGCCGGACGGGTGGACCAGAGAGACGTTC 5678 25 100.0 39 ......................... TTCGGGGAGGCAACCCCGTCCGCATGCCCTTGGATCTAC 5614 25 100.0 41 ......................... TTTTTGACAGGATGTACAGCATCTCCAAGAGCTCCCTCTTC 5548 25 100.0 41 ......................... ATCAGTTGCAGGTAGTCCGTGACTGGGTCGTGAACCTCTGT 5482 25 100.0 37 ......................... GCTTTAAAGAGGTGGCCGCGGAATCCATGTAGACTAT 5420 25 100.0 39 ......................... ATAGGCTCGCCGAGGAGCTTGAGGAGAAGACAAAAGCAC 5356 25 100.0 40 ......................... TCCCCCCGGAATTTAGGCCCCCGAAAAATAAAAACCTTTA 5291 25 100.0 38 ......................... CAAAGCCCTCAATACTCTCCCTCCTCTCGTGGTACCTA 5228 25 100.0 38 ......................... ATGTGGAGCCTATATCCTAACGGGGGGATAAAATGGAA 5165 25 100.0 41 ......................... AGTTAGATGCCAGATTATATAAATGGAACAACGACACTATT 5099 25 100.0 39 ......................... ATAAAAAGGATAAAGGGAGTTAGGCTGGAGCTGGAGGAC 5035 25 100.0 40 ......................... CTGACCCACCTGTGCACCTCCTCCCTCGTGAGCCTCCTTA 4970 25 100.0 41 ......................... GGGAGGTCGTGGACGCCGTGGTCGAGGGGAAGCTATCGGAG 4904 25 100.0 40 ......................... AGCTATCACGGCGTCGGATTCCACTTCTACTAACGATGAG 4839 25 100.0 40 ......................... ATTACGAGAAGAATTTCAACCTTTGGCACCACGTCGGCCT 4774 25 100.0 41 ......................... TTCCTACTGGTGACGATGACTTTACTGGTGCGACAACCCTG 4708 25 100.0 40 ......................... GAGAAACCCGTGACCGCAATATCGACCCTGTCCTCCTGTC 4643 25 100.0 38 ......................... AGTGGGTCTATTGGTTTCCCCCCTATATATTTCCGAAC 4580 25 100.0 37 ......................... TTGGTACTGGTACACAATAGACAACGCCACCTACACC 4518 25 100.0 39 ......................... GCTACTTTTATCCATGCTTCTCCTGCCTGTATTCTAGCC 4454 25 100.0 39 ......................... GACAGGCTTCTTCATATATGAACTCCACAAAAGTGATAG 4390 25 100.0 40 ......................... TGATCCTCCACCACCTCCACCTCCACCCGCACCATAGGTT 4325 25 100.0 39 ......................... TCAACTGTCGCTGCTACTCCTAAGTCTCCCTTGTCATCG 4261 25 100.0 39 ......................... GGAAGTCCACTCCCCTCTCCTCCGGCCTCGTTGGTGCGT 4197 25 100.0 38 ......................... TCAAGCCGGTCGTGGAGCTGAAATACCCGAGCTCCGCC 4134 25 100.0 37 ......................... TTTAGTGTCTCCCCGTGGAACGCCCTGTCTACTTCGT 4072 25 100.0 36 ......................... GTAAAATGGGGGGCCCCCTCTATTTGGGAGGGAGAA 4011 25 100.0 45 ......................... GGGTGCACCGGTAGATGCGGCCGATGCACTAAGAAAATCGGATTT 3941 25 100.0 39 ......................... AAGCTCCCCACGTAGATGGTGCCGTCGGGGCCTATGGTC 3877 25 100.0 39 ......................... ATTTTCAGGCTGTCTAGGGAGCAGAGGAGCAAGCTGTCG 3813 25 100.0 39 ......................... TGGCGTCCTCCGTGCTCCTCGTGGGCTTCGCCTACATAA 3749 25 100.0 38 ......................... TTTCCGTCGGTCACTCTTACCGTGTCCTCTAAATGGTG 3686 25 100.0 38 ......................... TAGTTTTACGTTAACTGTCTCTCTCTATAACTTTAAAA 3623 25 100.0 38 ......................... CTAACTATTACAGAGTACCCAATATTTCCTGTATGAAA 3560 25 100.0 39 ......................... AACTCCGCACAGCACTAAAAGCCCTTAATGAAGGGACAC 3496 25 100.0 39 ......................... ATGCCGTCGCCCCTTACGTACTCGTTCACCCATATCGGG 3432 25 100.0 39 ......................... CTATTGGGGAGAGAGAGCACAAGCCTCATGTCATCACCT 3368 25 100.0 39 ......................... AATTTTTTATCTTCCGGCCCGACCCGAAAATTTTTCCAT 3304 25 100.0 37 ......................... GGATACTCGAAGCGAATATCCACCGCACGGTATGTCC 3242 25 100.0 37 ......................... AATATTATCGAATATTCTTCCCTTGGCATCTTATTTT 3180 25 100.0 40 ......................... AAATAAATTGACGTAGCTAAGAAATTCTCAACGGCCGTTT 3115 25 100.0 39 ......................... TAATCAGGCAATTGTAATAGCATGTATATCAAACATCAA 3051 25 100.0 40 ......................... CTTTCAGCGTTCCTGTCTATATCAATGGATTTCACCCCCA 2986 25 76.0 0 ....TG...A.........C..G.T | ========== ====== ====== ====== ========================= ============================================= ================== 101 25 99.8 39 GTCTCAATGCAAAGAGGATTGAAAG # Left flank : TATAATAATCGCCCTCATACTCAATCTCCCCCAACTTCTTGGTTGTCCACTGTCCTCTGCTTTATCCCTTTTATATAAATCATTATCATTGTATTTATTCTTTCGTTTCTGTGGAAAACTCGCTCAGCTTTCCAGCTCAATCCCTCCTCTTTTCAGGGAGATACCAAATCTGCCGACCAAAAAATGGCAATACTCTGTTGTATCTATAAGATTTCATCTCCTCTCAATTTAAAACATGTTATTAGATGAAAGAGGAAGCAATATATTTCAGATGGGATAAAAAAGCTAGAAGAAGGCTGTTAAGCGCAGACAACTTTCTCGAACATTTTGGTTTTTCTGAGTATGTGAGAAGGGAACCTGAATGAAAGTATATAAATTTTTCCTCGAACATTTCGAGGATAGCTTTTAAAGTTTTTCCCTCACAGTTAATGTTCGAGAGAGGGGTTTGTGGAAAGGGTTAAATAGGAGCCCCTTGGTACAAATAGATTGTTAGAGTATAT # Right flank : AAGTTGCATCAGACCCTCATTAAGGCTGAACTGTTCAACTTCTTGACTGGAGACCCCTTCTCACGCTTATAAATTCCGAAAAATTTTTTATAAACATTTTTAGGTAATTCGATCAGAGAGTAGATGAAAAGAAGATCTGTGATCTTTGCAACTTGGGGGAACCCTTTTATCTGGAATGAAGCTAATTACAGGCTATCAGGGTCTAAAACAAGTGTAAAGGGTGTAACAACAATATATCTTCTGATAAAGGAGCTTTCTCCCGATCTTGTGGTGCTCATGGTTCCTGAAACCCTTCTCTGCGACAAGAAGGTGGAGGAATACGGAGGGAGGACAATCCCTCCAGGGATAAATGAAGGTGAATACAGAAATCTTGTGTCAGACCTGAGGAATTCCATAAAGAGCTTTTTCAGGAGGAAAATGCCGGAGGATCTGGAGGCAAAAGATCCCGAAGTTGTGATCATGCCAAATGTTGGGGAATACTACAGTGAAAACATAAGAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGCAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //