Array 1 960-2390 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000013.1 Streptomyces sp. CB03578 scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 960 29 100.0 32 ............................. CGGATGCGGCTCTACATGCCGAACGGCAAGGT 1021 29 100.0 32 ............................. GCGGCGGCTGGATCAGCGTCACCACCTGGAGC 1082 29 100.0 32 ............................. GCCGCATCACCGTTCACGGCAGCGGCAGGAAC 1143 29 100.0 32 ............................. ACCGAGGTCGAGAGGCTCAACGACCAGCTCGC 1204 29 96.6 32 ........A.................... CGCTGCTCGCCGAGCACGACTACACGCACCGG 1265 29 100.0 32 ............................. GCGCCGCAACAGGGTTGTCTCTGGGCCCAGCC 1326 29 100.0 32 ............................. TCCCTTGGCGGTGGATGGAGGCCGACCCCGTT 1387 29 100.0 32 ............................. CCGCCGAAGCCGTACCCGCGGTGGTGGCTGAA 1448 29 100.0 32 ............................. CGTCGGCGTAGGGCAGGATGCTGCCGGTCTGG 1509 29 100.0 32 ............................. TGCCGCAGCGTGTTGGTCCCGAGGTGGATCCC 1570 29 100.0 32 ............................. GACCAGGAGGACGCCGAGCGGGTCGCGCAGAT 1631 29 100.0 32 ............................. GCGGTTCTGAGCATGCCCGACGAACCAACACC 1692 29 100.0 32 ............................. CCGATGGAGCCGACGAGGAGTCCGCCGGCGGC 1753 29 100.0 32 ............................. CCGGTCGGCGTGAAGATCGACGCTCCGGACCG 1814 29 100.0 32 ............................. CTGACGGTGTGGGAGACGAGCCGGACCACGGT 1875 29 100.0 32 ............................. CGCTTCATCGTCATGGGGAGCCTGTCTAGCGC 1936 29 100.0 32 ............................. TCGGAGCAGTCCCTCTTGCGTTGTGGGGTCAG 1997 29 100.0 32 ............................. CCGAGGAGCCTGCCGCCCACGGAGAACGTGTC 2058 29 100.0 32 ............................. TTGACGCCCGCGTTCGTCAAGTCGGTCGAGAC 2119 29 100.0 32 ............................. GCCGCGGGCGACGTCGCCAACCGGTTTGCCCT 2180 29 100.0 32 ............................. ACTGCCTGTCCGCCCTCCAGGCGGTCGTCGAC 2241 28 96.6 32 ........-.................... CTCGCGCGGCAGTTTTGGCGACGTACTGCGGC 2301 29 93.1 32 ........................TT... CGGAGCGCGTCCACGCACACCGTCGGGGATCC 2362 29 82.8 0 ........T........C......TT..C | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGCTCCCCGCCGACGCGGGGGTGAACCG # Left flank : GGATCGTCCGCGACGTACAGGCCCTTCTCAATCCCGACACCACCGACACGGAGCAAGTACGCACTGATCGCCGCAGCGTGGACTTGGTGCACCTATGGGATCCCAAAGCAGGAGTCCAGCCCGCAGGTGTCAACTACGCACGAGAGCAGAGTTGATATGCCCTCCATGGTCGTCATCGCCACCACTGCTGTACCTGACCCCCTCCGCGGTGCCCTCAGCCGCTGGACAACGGAGGTAGTCCCAGGGATCTTCGTCGGCAGCATCTCAGCAAGAGTGCGTGACGAGCTATGGGCACAGGTAACGACTGTCGTCGGGGATGGACACGCGGTCCTCGTCCACCCGGCCCCCACCGAACAGGGCTACGCCCTGCGAACAGCCGGCACCCGCCGACGCATTCCGACAGACTTCGACGGCCTAACCTTGATCAAGATGACAGGAACAACTCAACCCACGCTCGCAAAGAAAGCGCAAAGCGCATAGATGAGCGCAGGTCAGAAAGA # Right flank : CGTTCAGGGACGGTGACTACAGCAGGGTTCCGACCCGGCCGGCCAGCACGTCCGGCCGTCGTCGGCGGCTGGCATGCCTGGTTGGTGCAGTAGCTGCCCCACCGGCCCGGCCACCCCGGAGCGACCCTGATCCACGTCATCGGATGCCAGCCTGGCGGAACACCCCTGGACCTCGACCGGACCTGGACGCCCTTAAGCAGCCCGCGCCATCACCTGCCGCGAATGCAACGCCGCCTCCTGCCTTCCCAGACGCCCGATCCGGCAGGCGCCACTGCCGGGCGGGGAGTGCGGGCCTCGGCATCCCAACGGATGCCGAGGCCCGGATGCGGTCCGGCTGTACCCAGAGCGCGGGAAACCGGTCCTGGCCCACGCACCCATACCGGCGCGAACTGATCATGAACCTAGCGGGGCCAGCGCTTCGCTGTACCCCAAAGGTGAAACCAGAGTCGACGGCGGTTCCTGACGGCCAGACGGCGCCGATCAACGTGGCCGGTACCAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 355990-354253 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000040.1 Streptomyces sp. CB03578 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 355989 29 96.6 32 ............................C CCGTGGAATGGAGATCTGGCACTGGCACAGGC 355928 29 100.0 32 ............................. GCGGCGGTCACCATGATCAAGGCGATCGCGCA 355867 29 100.0 32 ............................. TCCGTGGTCAACGGCCCGAATTCGAATTACTC 355806 29 100.0 32 ............................. CGCGTGCAGCTTGACCGGGACAAGGCCGCCGC 355745 29 100.0 32 ............................. ATCTTCACCGACGAGAACCACGCCATCCAGCT 355684 29 100.0 32 ............................. CCGCAGCCACCGGACACATAGGCGCCGTCTCC 355623 29 100.0 32 ............................. TCAGCGATGACGATGTCGCCGGACATCGCGCT 355562 29 100.0 32 ............................. CTCAGCTGGGGCTCGGGCGCGGGCGCCGCGGA 355501 29 100.0 32 ............................. AACGGGACGGATCCGCCCCCGCTTCCCTGAGG 355440 29 100.0 32 ............................. GACAACGGCATCCGCACCGCCGCCCTGACCAT 355379 29 100.0 32 ............................. CCCTGAGCGCGGCGGCGGCCGGCTTTCGGGTG 355318 29 100.0 32 ............................. CGGTCCGTACCGCGCTGCACCTGCGCTCGCTC 355257 29 100.0 32 ............................. ACGATGAGGGCGCTCATCCGCCGCGAGAAATA 355196 29 100.0 32 ............................. GCCTGCGGCCGGTTCATCAACGCGATGGGGCG 355135 29 100.0 32 ............................. TTGGTGCTGTCGAGGTTCCCGAGGACGCTGAA 355074 29 100.0 32 ............................. CAGATGACGGACGGCAGTGAGGCCCTGGTGCT 355013 29 100.0 32 ............................. GCCGCGCGGCACCCGTAGCATCGGGCATGCCA 354952 29 100.0 32 ............................. CAGCGCGTCCAGTCCCTGCCGGTCGGCTACAA 354891 29 100.0 32 ............................. ATTCGGCGGTGCATCGGCGCTCCCTGTGCGGC 354830 29 100.0 32 ............................. ACCGTTCGCGACGGTACGTACTCGAAGATGGA 354769 29 100.0 32 ............................. TACGGCGGCGTCGACGTGGCTGACTTCTTCGA 354708 29 100.0 32 ............................. TCGTTCACCTTCCGGGGCCACATGCACGGCTC 354647 29 100.0 32 ............................. AAATCCTTCGCAGGCATGGCGCGGTCGAGAGG 354586 29 100.0 32 ............................. GCACTGCCCGTGCTCCTGGCCGGCCAACGTCA 354525 29 100.0 32 ............................. GTCGGCACCCCCGCCGAACCCCTGAAGTCCGC 354464 29 96.6 32 .....................A....... TGGGAGATCACCCCGGACCGCGAGCTGACGTA 354403 29 100.0 32 ............................. CCGGTCAGGCGGACGGCGAGGGCGCGGGCGAG 354342 29 100.0 32 ............................. TTCAGGTGGAAGGCGCGGGTCTCTCCGATTCC 354281 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Left flank : GAAGTACTCCGGCTCCCGCCGCACCGCCGCGAAAGCCGCGGGAACCTGAGCCTGAAACGGCGGAGTGATCTTCCCGAGATCGTGCAGACCCGCCCAGAACGAGAGGACCTGCCGCGCGTCCGCCTCGGGCAGTTGTAACGCGTCCGCGATACGCGCACGAGCTTTGGAGCCCAGCACCACGTCCCACAGCACGCCGAACACAGCTGCTGCGTCCAGCAAGTGACAAATGACCGGGTAGGGGCGCTCCAGGCCACGCTCCTTCGCCCACAGACGGCAGTCGGGGCCGGCGACACGCACGGGGACGACATCGGGTTCTGTCATGGCATCACAGATAGCAGGCGGCACTGACAACGCACCGATCGGCGAACTCCTGAGGTTGCTGTCCCGTAGGGTTCGGCGTTGTGATCGAACTTGCGGAGGCAGAGGCTCTGACGTTCCTCTCACGAGGAGAGCAGGGTCAAGAAACGGCAAAGCCCTCATAGGCTGCCTGCTCAGGAAGG # Right flank : CAACCCGCGGATCTCCTGCGGCATGACCGGGAGCAGCACCTCAACCCTCTGAAACGATCTCAGGCCCGTTCTCGGGCACGGGCCTCTTACTGATCGTTTCAAGGAGACCTGCAGATGCGAGACAGCAGCCCCGTAGGCATCCGGCAGGTCGATCCTGGCCACGGCCTCCAGCGAGAAGGCCGGCGCTCCGTCCGGGCCGCCCTGCCACAGCAGCCGGACCTTGCGGGCCCGGTTGAGGCCCGAGCGGTGTAAAGGATTCATGCCGCCGTCGCCGATCGGTGCGCACCAGCGAAACAAGACCTGGTGCAGCGGAGAGTTGTTCAGCGCGTCGGCGAATGCCTGCACGCCGCGCTCCGACAGCGGGCGCCAGGTAGCCGATGCGTCCACCGGAACGAACATCCCCGTACGCACGAGGAAGTCGGCGCTCGGCTTCATGTGGTCGTCCGCGGGCAGGTCGGCCGGCGGCAACCGCAGTCCGGCAGCCACAGCCTGGGGCGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 365801-367166 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000040.1 Streptomyces sp. CB03578 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 365801 29 100.0 32 ............................. GGTGCAGGCGGGCGAGTCGGGACCGCGCCAGG 365862 29 100.0 32 ............................. GCGGCAGCCGGACCGTATGGCCGCTGTCCGAG 365923 29 96.6 32 ............................T CCCGCCTGGTCAGCATCGTCTGGCGCAGCAGC 365984 29 100.0 32 ............................. TCCTGGACCATGCCGTCGGGGATCCAGGCCGC 366045 29 100.0 32 ............................. CCCTGGACGGCTGGCGCGGCCTCGTGCCCGAG 366106 29 100.0 32 ............................. AACGTCGGCGAACACCTGCGGCGCCCAAGGTC 366167 29 100.0 32 ............................. GCTGCGGGCATCTGGCACGCGGGCATCTCCGG 366228 29 100.0 32 ............................. CGCCCAGTGATGCTGACGTGTCCGACTCCCGA 366289 29 100.0 32 ............................. CGGCATTACCGGGATGTCCTGATGGATCTGGA 366350 29 100.0 32 ............................. CCGGGCCCGAACGCTACGAGGTCATCGCGATC 366411 29 100.0 32 ............................. TTCTACGAGTCCGGCCGGCCGCCCAGGCAGAA 366472 29 100.0 32 ............................. CGCCCGGCGACTTCGCCTCCACGGTTGCGGAC 366533 29 100.0 32 ............................. AGCGCGCGCCCGTTCTTGTCCTTGAGCGTGTC 366594 29 100.0 32 ............................. GGTGACCGACCGACCGAGGGGAGACCCCGACC 366655 28 96.6 32 ...................-......... ACGGAGGTGGCCACGACCGCCGCGGAGCTTCG 366715 29 96.6 32 .........................T... GACGAGCTGATGTCCGCCGTGGTGCCCTTCAG 366776 29 100.0 32 ............................. CCGTACTCGGGCCAGCGCAACCACAGCGAGCT 366837 29 100.0 32 ............................. TGGTCCGACGACCCGACCAACGCGGACTGGCA 366898 29 100.0 32 ............................. GTCTGCGAGTACCTCCATGAACTCGCCCGAAC 366959 29 96.6 29 .............A............... GCGGCGACCATGGTCAAGGCCATCGTCCA 367017 29 89.7 32 ....GA...A................... CTGTTCAGCATCGCGTCGATGCTCGTCGTCGT 367078 29 100.0 32 ............................. GCGTCGCTCTGACCCTCGCCCTCCTCGTCGTC 367139 28 93.1 0 .................A........-.. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Left flank : CCCGCATCGTCACCGACATCCAGACCCTTCTCGCACCCGACCATCCTGTCGACATCCCCGACCCCGAAGAGCAACTAGTGGACCTCTGGGACCCGATCACGGGAACCGTCCCCGGCGGCACCAACCACTTCCGCGCCCCCTAACCGAACCCGCAGGATGACCCCACAGCTATGCCCTCGATGATCGTTATCTCCGCCACCGCCGTACCCGATCACCTCCGTGGCGCCCTCACCCGCTGGCTCCTTGAAGTCACGCCCGAGCTGTACATCGGCACCGTCTCCGCCCGCGTTCGTGACGAACTCTGGACCTCCGTCACCGCGTGCACCGCCGACGGCGCCGCCGTCCTTGCTTATCCCACCGCCAACGAACAAGGCTTCACCCTCCGAACTGTCGGCAGCCAGCGCCGGGTACCTCTCGACTTCGACGGCCTCACCCTGATGACCTTCAGGAGATACAGCCAAGAAATGGCAAAGCCCTTCTAGAATTGCAGGTCAGGAAGT # Right flank : GTCGAGGGCTTTCTCCTGCTCCGCGACGCCTTCATTGCCGATTTCGTCACCAGCTCCACCAGCACCGAAGTCGCCACCTGGGGTCCCCGACGCGTCGCAGGCCTGATCGCCCAGATGCAGGCACACCTCGCCGGCGACACCTACCCCGGCACACTCACGTCCTGACGGCCACACCCCGACCACCAGGAGCGCCAGGCCGCGCACGGCGTCCCCGGGGGCAGCCGCCATGGCAGGCATGGACGACACCATCGTCGGGCGGCGTCAGGCAACGCCGTATCCGGCTCTGCGAAGACACCGGTCCCAGCTCGCTGGGTGGGTACCGCGCCTGCTCGGCGTCACGTACGCACCCAGCCGGAGCCCGGCCCCGATCTCATCCCGCATGACCTCATCGGCGGATCCGCGGATCCGGACGTGGACCACGCGCCCAGTGCAGGGCCGCCAGCCGGCTTCGTAGCGCCGAATGATTGACGCGCTCGCGACGCCGCCGATCGGCGTCGAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32006-29237 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000026.1 Streptomyces sp. CB03578 scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32005 29 93.1 32 .......................TA.... TCCGTGATCGGGCACCTGGAGTGGCAGAAGGG 31944 29 96.6 32 ........................A.... TCCCCTGACCTGGTGGAGACGATCGAGACCGG 31883 29 93.1 32 ........T...............A.... TTGGCGACGACGGACGTGTGGCCTTGGCGGGT 31822 29 96.6 32 ........................A.... ACGGCCCAGGTGTCCCACAGGGGACGGTAGAA 31761 29 96.6 32 ........................A.... TTCAAGCGCGGCGTGTGGATCCGATGCCTCCT 31700 29 96.6 32 ........................A.... CCCTGGTCAAAACGGCCATGGTGGTAGGCGGC 31639 29 96.6 32 ........................A.... GACCCGGACACGTCAAGGGGGACCGTGAAAGC 31578 29 96.6 32 ........................A.... CACCAGGAACGCGGCGGATTCGACCGGCAGCT 31517 29 100.0 32 ............................. GTACCGATGCGGCTGGTGTCATCACCGTTGTA 31456 29 96.6 32 ........................A.... TCCCCTGACCTGGTGGAGACGATCGAGACCGG 31395 29 93.1 32 ........T...............A.... TCCCCTGACCTGGTGGAGACGATCGAGACCGG 31334 29 93.1 32 ........T...............A.... TTGGCGACGACGGACGTGTGGCCTTGGCGGGT 31273 29 96.6 32 ...T......................... TCCTCACCGACGCCACTACCCCGCCCACCAAC 31212 29 100.0 32 ............................. GCGTTGGGGCCGGTCCTGGTGGCGGCGGCGGT 31151 29 100.0 32 ............................. ACCGCGTTGTCGGCTTCGGCCGCATCGCCTTC 31090 29 100.0 32 ............................. AAGAAGAAGGAGGCCAAGCCGCCGCCCGGCCC 31029 29 100.0 32 ............................. GCCAACTGAACACGGGCGCCTGCCACGGTGGT 30968 29 100.0 32 ............................. CAGGCCAGCACGCAGCACGAGCGCGCTGAACA 30907 29 100.0 32 ............................. CATGCGCGAGGGGCGCGCCTCATGTCTGACCA 30846 28 96.6 32 .....................-....... CTCGCGCAGTAGCCGAGCAGGGTTGCGGCTTC 30786 29 100.0 32 ............................. GCGCGCTCCGTCGGCATCTGGCTCGGAATCAG 30725 29 100.0 32 ............................. CGCCGCCGGTTCCTCGCCGCATCCGCCGCCGC 30664 29 96.6 32 .................A........... CCTGTGTCCGAGGCGATGTTCGTGGTTCTCAC 30603 29 96.6 32 .........................T... TCACGACCAGCGCCGGCGGCTCGGGCGTCGGC 30542 29 96.6 32 .........................T... TCACGACCAGCGCCGGCGGCTCGGGCGTCGGC 30481 29 96.6 32 .........................T... TCACGACCAGCGCCGGCGGCTCGGGCGTCGGC 30420 29 96.6 32 ...............A............. GGGACGGCCCGGCGGCCTTTTTGCCCACTGTG 30359 29 96.6 32 ........................A.... AACACGGCGGCGCCAACTCCCTTTACCGACCC 30298 29 100.0 32 ............................. ATCTGCGAGCGGGGCCGCCAGCTCCGCATCGA 30237 29 93.1 32 .......T..................T.. ATGAGGTACCTATGATGGGTCAACGACAGGAC 30176 29 96.6 32 ........................A.... TCGCGCTTGGTGACCGGCAGGTAGAACGTGGG 30115 29 100.0 27 ............................. CACCAGGAACGCGGCGGATTCGACCGG 30059 29 89.7 32 CA......................A.... GACACCGTCACCGCTGCGCTCACCGAGCTGCA 29998 29 96.6 32 ........................A.... GACACCGTCACCGCTGCGCTCACCGAGCTGCA 29937 29 96.6 32 ........................A.... CCCGCGGATCCGACATGGACCTAGCCGATCCG 29876 29 96.6 32 ........................A.... TACACCGGCCGGCTCGCCCGCGTGACGACCAC 29815 29 100.0 32 ............................. CGCACGGGCCTCTCCGAGTCCCACGTATCGAA 29754 29 96.6 32 ........................A.... CTCTACGGCGTCTCCGTCGATCCGCTCGCCAA 29693 29 96.6 32 ........................A.... GCCCACCGCTGGGTGGTCGAGGCCTTCGGCCC 29632 29 100.0 32 ............................. CTCTCGAAGTCCGCTGACGCCGCGCTGGACGC 29571 29 96.6 32 ................A............ TCGAACCCAGGATCGCGGTACACGCGAGGGAC 29510 29 96.6 33 ........................A.... AGACCACCGACACCACGAGCTTCGGGTCCGCTG 29448 29 100.0 32 ............................. GTCAACCCGGGCGGGATCGGGCCGAATGAGGC 29387 29 100.0 32 ............................. TGCACCGCCTCCAGCGTGGTCCGCTCCGGTGG 29326 29 89.7 32 .C............G.........A.... CTGGTGGAGCAGGCGGAGGCGACCCGGAAGGC 29265 29 93.1 0 ........T...............A.... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 97.0 32 GTGCTCCCCGCCGACGCGGGGGTGGACCG # Left flank : CGACCCGATCTTCCCCTGATCGCCAACCAGCCCAGCACTCAAATACGCCGCACCGAGACGATCACAGAACTGAAACCCCGACACCTTCCCGATGTCATGCAGCCCCGCGCACAACCCCACCAGCAACCGAGCCTTCGTCAGGTCCCCAGATAACCCGAAGCCCGCAGCAATACAGCGCCGCTGGCTCTCCGACAGATACGCGTCCCACAGAAACAGAGCCACTGCCGCGGCATCCAACAGATGCCGCACCAACGGATAGGGCGGCAGCTCCGGATCAAGCCCACGCGCCTTCCCCCACAACGACTGATCCGCCTCGCACCACGGCTTCCGCATCACAGCCCCCTTCCTACACGGACCCCCAAACTTACGGAGCACGGCATGCTGCGACACGAACATCGCCACAACGAGAAACAGTTATCGTTCACGCATGGACCCCCGCCTCACACCGCCACGCCAGGTAAAGAAGCTGCAAACCGCCTAGAACGCTGCAGGTCACAAAG # Right flank : CGGATTCCGCATCCCCCTCCTGGGGTCTGGGTGTGCTCCCCGCCGTCGTGACCAATCACGCAGAGAGGTCCAGGCGCCGAGGCTGTGCAGCCACAGGCAACGCGGTGAGTCCGGCCTTCTCAGATCTGGCCCGGGCCACGGCGAGTGCGTGGGACGAGCTCCTTGCGCGCTCGGGGCCGGACTGCTCATGGAGGCGGGCAAGCTCGGCTTGGCCGTCCGCGAAGAAGTGCTCTGGCTCGCGCAGGGCGTTGCGGATCTGTCCCTCGACAGCTGCCTGGTACGCGGGGTCCACCGGCCTTGAGGTCCTGGCCTGGCGGTGCGCTGCGATGGCCTCGCGGTACCCGGCGGGCGCCTCGTAGAGCTCGTCGGGCACCGGGGCGGCCGTCAGCTGAGTACCGGAGACCTCTGGAGCCTGGGCTGGAACGGTGGGGACGATGCCGGGCGGCAGGATGCGGATGGTGCGTACTGCTGTGGGGGAACCCATGACCTGGTTGGCGGCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGGACCG # Alternate repeat : GTGCTCCCCGCCGACGCGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134752-135758 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000005.1 Streptomyces sp. CB03578 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 134752 29 100.0 32 ............................. ACGGGCCGCGCCGCCGCCGTTCGGTCATTCAA 134813 29 96.6 32 ............................G GCGGCGCCCGCGGGGTTACCCCGCAGTGGGTG 134874 29 100.0 33 ............................. CCCGGGCGCCGGCCTGGCTACCGGCGGGCGGGT 134936 29 96.6 32 ............................T TCCTCGCCCGGATCATCGGCTCGCAGACCGGG 134997 29 100.0 32 ............................. ACCGCGTACCGTCGCCAACAGACCATCTGGGG 135058 29 100.0 32 ............................. TGGCCCCTGAACTGCAGGCAGACCTTCAGGCA 135119 29 100.0 32 ............................. CCGCTGCGAATGCCCAGGATGCGACCCCCGCG 135180 29 100.0 32 ............................. GCCATGGGCACGCTGTACCACGTCTCCCCGCA 135241 29 100.0 32 ............................. GCGTGCGTGGCGCCGATCCACAACACGGCCAG 135302 29 100.0 32 ............................. ACGGCTCCCCACGCTTGGCGAGTGGAGCACGG 135363 28 96.6 32 ...........-................. CTCGTCGGCTTCGAGGATGTAGCGGAGCGGTT 135423 29 96.6 32 .......................A..... GCTGTGGCTGCTCACCGGCATCACCGGCCTGG 135484 29 100.0 32 ............................. CTGGCCTTCTCGCCCGCGGTGAGGGGCCAAAT 135545 29 100.0 34 ............................. CGGCGCCGGTCGGCGCACCCGCCTCACATCAAGG 135608 29 100.0 32 ............................. GCCCCCGGCCTCATGGGGCTGATCCCTACGGC 135669 29 100.0 32 ............................. ATGCGCGAGGGGCGCGCCGCTTGTCTCCCCAG 135730 29 89.7 0 .C..........T............T... | ========== ====== ====== ====== ============================= ================================== ================== 17 29 98.6 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TGGTCATGCTCGAGTCGGACAGCGGTGTCGCAGTTCCCGCGGGCCGCAACTATGCCGATGGGATGACCTGGTGACGGTCATCGTGCTCACCCAGTGCCCGGAAGGCCTCCGCGGATTCCTTACCCGCTGGCTCCTTGAGATCTCGCCCGGAGTCTTCATCGGCGGACCGTCTGCCCGTGTTAGGGCGGCGCTGTGGGAGGAAGTGCAGCGATACGCGGGCATGGGGCGCGCCCTTCTCGCGTACAACACCGACAACGAACAGGGCTTCGCCTTCGAGACCCACGACCACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTCGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCGTCCAAGCGCCGCCGTTTCGGAAGCAGGTAGATCCGATAGATACCCTATGTCGGAATCTCAGGAAGTGGTTCAAAGTGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CTGCCGACCGTTCTTGATCTTGCTCCGGTAAGGGGTCGTTTTATGACAGTCGCCCAGCGTTGAGCCATAGACCCTGCTCGGTCCAAGAGGACACCGCTGTCGTCCTTCGCCTGCTCATGCCGGGACGCCCTGCGCTCTCCCGGCAGCCCGCAGAGGAAGTCAGGTGACCAGCAGCGGATCAGCGCGCAAAGGTGCTGCGGCGACGGCGAATGCTGGCATCTGTGGCGTGCGGGGCGGTGACGGTGCAGTCCTTCGGAACGGTTCGGATGGCCAGGGTCACACCGCTGGTGATCTGGCAGCGGCGGCCGATGGTGACGCCGGGACCGATGCTGATGTTGTTGCCGGTCTGGGTGTCGTCGCCGATGAGGGCCCCGAACTGTGTGGTCCCGCACCGGTAGAGGCCGGTCATGGTGCGGATGATCACTTCCCGATCGGGTGTACGCATGTCCGTGGTCATGTTGATCGCGGCCACGGTGACGCCGGCGGAGAGGTGGGCTCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142540-143909 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000005.1 Streptomyces sp. CB03578 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142540 29 100.0 32 ............................. CACCAGTGCTTCGCGTTGCCGTGGTCAGCGTC 142601 29 100.0 32 ............................. ACGGGCATCCTGGTGGCGCCCACCGGCCTGGC 142662 29 100.0 32 ............................. TACTACACCCCTGGTCAGATCGGTGACGGCGC 142723 29 100.0 32 ............................. AGTGCGGCGGCCACGCGCCCTTACGGCTACGG 142784 29 100.0 32 ............................. TACGAGCTGACCTGGCCCGCATCCCTGTTCGT 142845 29 96.6 31 ............................G CGACCAGCTCCAGCACGATCAGGACGAGCAG 142905 29 100.0 32 ............................. GACATCGATTACCTCGATCTCGAATACTGAAT 142966 29 100.0 32 ............................. GGACAGCTTCTTGCCCGAGGGGCCAGAGATCG 143027 29 100.0 32 ............................. GGACAGCTTCTTGCCCGAGGGGCCAGAGATCG 143088 29 100.0 32 ............................. GCGAGGCAGGACCGGCTGAGGTCGGGCCAGTA 143149 29 100.0 32 ............................. GGCAGTGCCTTGGCCGGGGTGACCGAGCGGAG 143210 29 100.0 32 ............................. GGCTGTCTCCGATCTTGAGCAGGGTCAACGCC 143271 29 100.0 32 ............................. ACCTACGTCAAGACCGGCACGCTGACGACCAG 143332 29 100.0 32 ............................. GTGCCCTGCACGCTCTCCTTGGCGATGCCGAG 143393 29 100.0 32 ............................. AGTACGGGTACTGCCCAGTTTGCGGCCATCAG 143454 29 100.0 32 ............................. TGCGGCTAGCAGGCCATTGCCGCGTAGCCCCG 143515 29 100.0 32 ............................. CTGGGCAGCTACGACCTCAACCTCCTCAGCCA 143576 29 100.0 32 ............................. GCAGCCGGCGGGACCCCCCGCGAGCGGCGGTT 143637 29 93.1 32 ......A................A..... CTGCTGACGAGCCGGGGCCCGCGGCCCATGGC 143698 29 100.0 32 ............................. AGCATGTTCACCCTCGGGGTCGCGGGCAACCA 143759 29 100.0 32 ............................. GACGACGTCCTCTCCGTACAGCCCGGCGTCCT 143820 29 100.0 32 ............................. TACCACGGGTGGGACATAGACGCGCTCGTGTC 143881 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CGTGAGTTGTCTGCGCGTCACGACCACAGTCCTACCGCGTCCCACCCCGCGAAGAGGGCGAAACCCCGCAACTGATCACGACATCACACAGGCCCTAGGCCGGCCGCCGGTGATCTAGCACCTCTACTGCTGCTCGCGCACTTTGCCCGGGAAACTTCAGCGCTCCGGGTAACGTCCGGGTTGGGCCGCGCCGAGCTACTGAAGTGCGGCGATACGCAGGCATGGGGCGCGCCCTTCTCGCGTACAACCCGACAACGAACAGGGCTTCGCCTTCGAGACCCACGACCACAAGTGGCACCCGATTGATCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGACCGCGTTGCTCCACCTCCGTCGAGCCGCCAAGGCTGGAGCAAGGCAGCGAAGCGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGTGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CGCGGCCTCCAGGTAGTCGTGCTGTTTAAGCGCCAGATGTAGAGGTGTTGCGGGGTCTGCACCGCAGGGTCAGCGGTTGCCGGTCCAGACAATGCGTTCCGCGAATCCGCCCCGCTGCTCGGCCTTCGCTGCCCGGATCTTCTCCAGCTGGGTGGGATCGACGCCGAGGTCGGCTGCGAGGGCGAAGGCGACCTCGTCGAGGACGTCCGCGAGCTCTTCGGGGGCATCTGTCTCGTCCGCCTCCATGTACTCCGAGACCTCCTCCACGAGCTTGACGCGGAGGCGCTGCCGGTACTCGGCCGGATCGGCCGCGTAGACCTCCGGCTCGGCTCCGTCCGCGCGGATGATCTGAGGAATCCGGTCCCGTACCAGCTTGCCGTGGAGCACGTACTTCTCCTGCACCAGATCGTCATCGGCCGGCCAGACGGCCGGGCCTCATGTTGTTCGAGCCTAGAGATGGGGCCTCAACTGGCGCCATCAGAACCAGAAACCCCACCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 149633-150332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000005.1 Streptomyces sp. CB03578 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149633 29 100.0 32 ............................. GCGGTGGCGCAGACATTCCCGTACAAGACGGA 149694 29 100.0 32 ............................. GCTCCTCACCGCGGACCGAGGTAACCGATGAC 149755 29 96.6 32 ...............C............. CCGTCTCCGCGGCACCGGCCGGTTACCGGCAT 149816 29 93.1 32 ..........GC................. TCCGAGCCCGCCCGGAGCGGGCCTTCTACTTC 149877 29 100.0 32 ............................. GCTCCTCCCGGAGGATTCCTGACGGCCCATGA 149938 29 96.6 32 ................G............ TCCGCGACGTCCGGCAGCCTGTACGCGATACC 149999 29 100.0 32 ............................. GGCACGGTCATCTACGACCGGGTGCCAGTCGA 150060 29 100.0 32 ............................. GCGGCCCGCGAGCTCCAGCAGCGTGCCAATGC 150121 29 86.2 32 ..............CA.C......A.... GCCGACCGCCGCGCCTTCGCCGAAGTCGAGCA 150182 29 89.7 32 ........A.....T.........A.... CAGTACGGGCCGACCGAGACCATCCTCATCCG 150243 29 89.7 31 ..............C........AA.... CCCGAGCCTGGCACGACAGCTTGCGCGACAA A [150270] 150304 29 89.7 0 T.............G.........A.... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 CTGCTCCCCGCGCAAGCGGGGATGGCCCC # Left flank : GAAGAGATCCTTGAGGAGGCACGACGCCTGCTCGCCGGACTCTGGCCGCCACTGGGCTGATCTCACCGGCGGCAGACGAGGATGCCGCCAAGGCAAGTGATCTCGTACGCGCCATTGCGGGCGATGCCGTCGGCGACGAGGCTGCGGGCCCGGTCGATGGTCGCGTCGAAGGGCACGTCGTGCTGGTCTGCCCCAGGCGCGCTACGAGGCCGTGTGGGCGATGACGGGCTCGGGGCCGCGGACCGTGATGGTCCCCGGAAGTTCGGCGACCTCCACCGTCCGAACTCCTCGCCGAGGAACGCCGGGGCCTTCTCCAAGGAGACTCCGAGGCGGAGCCCTTGAGCGCGCGGGGGCACGGGCCGGCTATGGGCCGATGCCACCCGGGAGGCCAACAGCTATCCAGCAGAATGCGGCATTTAGGTGGTATTAGCCATATGCGCGTATCTCTGGAAGTGGTTCAGAACAAGGCGCAACTGGCCTAAATTGGCAGGTCATTAAGA # Right flank : CGTCGGCACCTCGGAAGGTCGCCGGGATGGGGCTGCTCCCCTCCGCCCGCGCCGTCAAGACGCGGAGGGTATTTGTACCGCTGAGGTCGGTCGAAAGACAGATCACGGATCCGACGATGGCGCCGGCAGTGCCAGTGGTGGCCGCGGTGATCGACGCCCCGGCACGGCTGACGTGCGGGGTGCCTCTCAAACAACGAGGGGCGGAGTGTGATGGCGTGCAGAGTCGGCTGTCGGCTGTCAGTTGTGGCTGTGAACGAGAACAAGGTGATCGCGGGTCATGCCGGGCAGGATCGCCGCGTCGGTCCACCATCAGGCGGGGCCGACCGGCGTTACGAGGTGCTGCCGGTCAGCGTGTCGCACTCGACGACCACGTTCACCGTTTTTCTCCGGATATGTGTCAGGGGCACCTCAGTAAGTCCCTGACCGCGTATGGCAGGGTATGCCGACGACTCACGCCGGCCGGGCTCCGCGCGGGACCCCGGCCCCGCCGTATTCGGGCA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAAGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 151471-153269 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000005.1 Streptomyces sp. CB03578 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151471 29 100.0 32 ............................. TCATGGAGTACCGCGGCGCGGTAGTCCGACTC 151532 29 100.0 32 ............................. ACCCCGAGCGACCGGTTGTCGAGGCGCCACCG 151593 29 100.0 32 ............................. AATCTGGTGTTGGCGGCGGCCGGCGGCGGGCT 151654 29 100.0 32 ............................. TTCCCGGCCTCGGAGGCAGATGACGTCAGCGG 151715 29 100.0 32 ............................. GCCCACTACACGGACACCGGCATCGGGAAGTC 151776 29 100.0 32 ............................. TGGGCGGGGATCCCGCCGCAGTCCGTCGGACA 151837 29 100.0 32 ............................. TCATACCGGCCGAAACCGGTGATCTCCACGCC 151898 29 100.0 32 ............................. ATCCGCTTCCCCGCCCACTCCAGCTCGCACGG 151959 29 100.0 32 ............................. CTCGGACTGGACGGCGTCGAGGTTGAAGTCGA 152020 29 100.0 32 ............................. GGCGGCCGCCCCCCTCGTCGCCGTGACTGTCT 152081 29 100.0 33 ............................. CCGGTGGGCTACCTGATCATCGTGGCTGCGCTC 152143 29 100.0 32 ............................. ACCGGCGGCACGCCCGGCGCGCTGCGGGTGTC 152204 29 100.0 32 ............................. ATCCCCGGCCTGGCCATCAGCGCGTCCCTGTC 152265 29 100.0 32 ............................. TGGATCTCGCCGCGCCATCCGCAGTCACCGCA 152326 29 100.0 32 ............................. CACGAGCCGAAGGCCATCACGGCCGGAACGGG 152387 29 100.0 32 ............................. AGGGGTGGCCAGCTCGCGCGCCAGGGTCTTGA 152448 29 100.0 32 ............................. GCGCACCTGACGGCGCAGCTCGGGCTGACCGA 152509 29 100.0 32 ............................. GCTGGCACCCGCCTGATCGACGGCCTGATCGA 152570 29 100.0 32 ............................. TCGTTCCCGCCCTCATGCAGCCCGAGCGAATT 152631 29 100.0 33 ............................. CAGCCGATAGAGCTGTTCGTATTGATGGTGAAG 152693 29 96.6 31 ........................C.... CCAGGGACCTGCGGCAGGAAACCGCTGGAAG 152753 29 100.0 32 ............................. TACGGCCGCGCAAGTCAACCCCTTCCGCCGAA 152814 29 96.6 33 ............................A CATGCTCGCCGCCTACAATGCGGGATCCGGAGC 152876 29 100.0 32 ............................. GTGCTCCCCGCGTGCGCTGACTGCAACCTAGA 152937 29 100.0 32 ............................. GAAGGCCAACGCGGACCGCGAGTTCTGGGCCG 152998 29 100.0 32 ............................. TTCCCCCTTGAGGTACTGGAGACCGACGATGA 153059 29 100.0 32 ............................. CAGAGGGCCGGCGGGCTGTTCCTTCGCAGGAT 153120 29 100.0 32 ............................. GAGACCCGAGCCCGGAACAACCTGCCGTCCAT 153181 29 96.6 31 ........................C.... CACCCGGGTTGATGTTGTGGGTGAACTCCTG 153241 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCTCGAGCCCGGGGAGCAGGTTGAGGTGACGACCATCGTGAACCTGAGGTCCGTCACCGTGCGCCGGACGGCAGCGTTCGCGGCAGCCTCGGCCATCCTGAGCGGCGGTGGAATGGCCGTGGTCCCGGTGCCGACCCCCATGTACCTGGCGATGACCGACCAGCGCATCTTCATTTTCCGAGCAAACCCGACGTTCGCCCGGCCGGAAGAACACCTGATGACGATCCCGCGCGCCGGTCTCGTCCGCTCGGAGATCAAGGAGCGGGTGCTCAACTCGTCCTTCATGATCTCCCCGGCTGACAGTGAGCAAGGCCTGAAAATCATCTTCCCGCTGGTAAGCCGCAAGGAGCGGCACGTGATAGCGGCCGCCTTGCCTCTGGCCAACTGACGGCCCAGGACAGGGCGGGAGCGCAGGCAGAACCGATTGATACCCTATGTCGGAATTTCGGGAAGTGGTTCAAAGTGAGCTGGATCCCGTAGAAACTCGCAGGTCACGAAGA # Right flank : CGCCCTGGAACGTGGCCTCGGCCGACAGTCGCGCTGCTCCCCGCACCCGCTTGAGGCCCATGCCGGCCTCCTTGCAGAACCCATGGCCCGCTCCAAGGCCTTCCTGCTGTGGAAGACGCGGCAGCACGTCGCTTCGATAGGTCAAGTACGTCGGGCCGGCGGGAGACTTCGATACGGTCAGGCTTCCCGCCGGCGCACGCGCGGCACTTTCTCAGGCGGCGCTGGAACGAGGCGGCCGGTGCCTGGCAGTGGCCTGCGCGATCAGTACCGCGGCGCGCTCGACCTCGGCGGTCGTGGTGTTGCGGCCGATGCCCAGGCGCAGGGTGCGGCGGGCCTGGGTGCGGGTGAGGCCGATGGCGGTGAGGACGTGGGAGGGTTCGCCGGTTCCCGTGTTGCAGGCGGATCCGGTGGCCGCGGCGATGTCCGGGAGGTGGTCAAGGACGTCTGCGGCTTCGGCGTCCGGGAGGGTGAGGCTGAGGGAGCCGGGGATCCGGCGGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 160380-161263 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWLD01000005.1 Streptomyces sp. CB03578 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160380 29 100.0 32 ............................. GGCCGCTGCTGCATCTCCGTGTAGGAGGAGAC 160441 29 100.0 33 ............................. AGTATGAGCGCACCGGCCGTATCGACACCGCCG 160503 29 100.0 32 ............................. AGGTCTCAGTGAGTCTCGGTGAGTCTCAGTGA 160564 29 100.0 32 ............................. TCGCCGGGTTCAGCGTCGAGAGCAAGCGCGAC 160625 29 100.0 32 ............................. AAAGCCGACACCGTGGCCGCCGACAACACCAA 160686 29 100.0 32 ............................. GCGAGCCGCGATCCGTCGTAGTAGGTGCCGAG 160747 29 100.0 32 ............................. GTGATCCGCGCGCAGCTCAAGGAGAGCCTGGG 160808 29 100.0 32 ............................. CGTCGGACGAGCCCGTACGACTGCCCGCGGGA 160869 29 100.0 32 ............................. GTCTCGGTGCCGGTCGCCGTGGACCGGTAGAC 160930 29 100.0 32 ............................. GTAGGCGCTGCGGGAATTGAGACTCGCTGAGG 160991 29 100.0 32 ............................. ACTTCGCCTTGCCGGAGGCCGGCACCAACTCC 161052 29 100.0 32 ............................. GTGGCGGGCACCGGGGCAGTCGGCTCCTCGGG 161113 29 96.6 32 .........................T... CTCTACTACCGGCGCCAATGGCACGCCGCCCC 161174 29 93.1 32 ..............T.......C...... TCAACGATCTCACCGTGGAAGTCCGGGCCAAG 161235 29 93.1 0 ........T.....T.............. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : ATCCCACCCGAAGCGGCTAGCCCCGTGGCTGAGCTGCTCCTCTGGAGCCACCAAGTACTGCTCTCGGGCCGGCGGGCCCGTGTGGGGCTTCGCCCGTCCTGTCACGCGCGCCTGATCTGCAGGGACCGCAGCCGCTCGGCGATGGCGTACGAGTCCAGGCTCAGGGCGCGGATGTCGTTGACCAGGTCGCGCCACGGCTCGTACGCGGTGTCGACGAGTGTGCCCGCGGCCTCCAGATAGGCGCGCAGGATCTCCTCCTGGCGGTCCAGGAGCCATCGGTAGTCGACGAGCAGTTCCACTGGGGTCTCATGAAGGCGTCACGCTGATCCACCGCCCCAGTGATCGCGTCGCTCTACGTCCGCCGAGCCGCCAGGGCTGGAGCAAGGCAGCGAAGCGCCGCCGTTTCGGAAGCAGGTAGATCCGATTGATACCCTATGTCGGAGTCTCGGGAAGTGGTTCAAAGTGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CTGTAACGAGCTGAAATAACGCTCTGTCACAGATGCACCGCGCCGCCGGCACTGCCCGCGCCGCGGAGGACGCCCTCCCGCCGGTAAGCACTCCCTGATCCTGCGGCTCCTTATGGCGGAAGTCGAGCAGGCCTGAGCCTCTGCTCCGAGTCGGGCGGCTTCTGTCCAAGCCGCCGCCCTCACAGTGCCACCAGAGGCCGTTGCGCGAGCATGACCAGTCAGTCTGCGCAGACCCGCACGGGTGCGAGGCGCAGGTTCGATGGCGCCCTGGTCGAAGGCCGTCCGCGCTGCCGCGGCCGGTGTCGGAGGGGCGGGATACTCTCCGGCCATGGATCTGCCCTACAGCACCAGGCCCTCTACGGAGGAGATCATCGCAGCTGTGCCCGGACTCGCGCCGTACCCCCGGGCGGCCGTGGTGCTGGCCCCCGAGCGTGGGGAGCCGACGGTTCACCAGAGCTCGGTGGGTGGACCGTTGCTCTGGCCGGCAGATGAGCCCTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //