Array 1 30810-32408 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789394.1 Arthrobacter sp. HMSC08H08 Scaffold226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30810 29 100.0 32 ............................. TGGAGCCGGCCGATCCCGAGGTTCAGGTCTAC 30871 29 93.1 16 ...........................NN NNNNNNNNNNNNNNNN Deletion [30916] 30916 29 93.1 32 NN........................... ACTGAGGGACGCGTCTACACCAGGATGATGGA 30977 29 96.6 32 ..............C.............. AATCGTATTCATCGATCTTTAGAAAAGGTTTT 31038 29 100.0 32 ............................. TCTTGGTAGGCGGTCGCGTAGGGGAGTGCGGC 31099 29 100.0 32 ............................. CCCAAGCCGGCATCTACACCACTGGACGCAGA 31160 29 100.0 32 ............................. TCCGCGCTGAGGTCACCGAAGGCGACGACGGG 31221 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [31267] 31267 29 96.6 32 N............................ AACTGCAGGTGCAAGGCGTAGACCCAACGGTT 31328 29 100.0 32 ............................. TAGCGAAGTATGTCACGACCCCGACGGCACGT 31389 29 100.0 32 ............................. CATCGGTCTACGCCGTAGATGTCGCGGCCGGT 31450 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [31496] 31496 29 96.6 32 N............................ TACGTCCTAGGTAAGCAGGCCCGGCAAGGCTC 31557 29 100.0 32 ............................. GAACCGCCGATCACCTCGTGCTTACCGAAGAA 31618 29 100.0 32 ............................. TCGCGGATCAGCTGCTCGCGCCTAGACTGAGC 31679 29 100.0 32 ............................. GCCCATAGAGCATATTTAGCCTGCCGGGGTAG 31740 29 96.6 19 ............................N NNNNNNNNNNNNNNNNNNN Deletion [31788] 31788 29 100.0 32 ............................. GTTTGGATTCTTATTCGCCTGGCTGATCCGAT 31849 29 100.0 32 ............................. CGCGTCGTTGGCCTCAAGCTGAGGATCGAGTC 31910 29 100.0 32 ............................. GATACGCCCCTCGGAGGGTGGTGGAGGTTGTC 31971 29 100.0 32 ............................. ACCGGCGGCTCGGTACCGCGCTACAGAAATGG 32032 29 100.0 32 ............................. TCCGTGTAGGCCGTACAGCACGGTCATACCGT 32093 29 82.8 13 ........................NNNNN NNNNNNNNNNNNN Deletion [32135] 32135 29 93.1 32 NN........................... AGACTCGAAACCATCCCCATAGTCAAGACGTA 32196 29 100.0 32 ............................. TATGCATAACGTATAGGGTGGAAATGTGAGGA 32257 29 100.0 32 ............................. CAATGCAGACGCGAAAGCTCGCCTCGATGAGC 32318 29 100.0 33 ............................. GCCCGTCATCGGTCACGGTCCGCTACCGGGGGG 32380 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.4 29 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : CCACGGAAGTGACGCTGAAGCTTTGGGGTGGTTTTGGACCGGAGGTTGCCGCAAAGAGAAATTATGGGGGCACGTAACAGTTGCTTGTCCTAGTTCTATCAGCGGTGCCTGCTGGGCTTCGGGGGCATGTGACTCGGTGGTTATTAGAGATTTCTCCTGGCGTTTTTGTTGGGAGTGTTTCCCGGAGGGTGCGCGAGGCTCTTTGGGAGGAGGTTCGGGGTTCTGTCCGTTCTGGGCGGGCGATCCTGGTTTGGCAATCGAATAGTGAACAAGGTCTTGAGTTTTTGATTCACGGGCATCATTGGGAGCCTGTGGATTTTGATGGGATAACGCTCATGATGCGCCCGCACCAGCCTTCCGCGAACTCGGCCAGGGTTGGCTCTAGCAACGCGTCGAAATGGCGCCGCTACGGACGCAGATCAAACAGATGACTTTCGGCTGTTGTCCAAAGTGAATCTTTTGACCACAATAAGGTACATTGACCCCAATGGGATCCAAGT # Right flank : NNNNNNNNNNNNNNNNNNNAGTTCCCCGCGCCTGCGGGGATGATCCGTTTCCTGGCGTTCGCGGCCTTCACTGGACGGGAAATCAACGGATTCAAGGGACTAGTCATCTCGCTGATCGTCTGCGTCCTGGCGATTAGCGCGGGAACGATCATCAACGTCTTCGTCTAAGCACCGGTGAACCGTCTGAGAGAAAGAGAAGATCCTCATGGCTGAAACTGATCCATTAGGCAGAAGCTGGAAACTCTGGGGCGGTATCCTCGCCTTCATCGTGGTCATTGTGATCGCGGGGCTAGTCATCTTCCCCCGCGTCAACTCTGAACCAGGAACAGCTCCGACCGCTGCTGCCCCGTCGGTACCAGTTGAGTCTGTGTCCCCGCCCTCCCCTTCGAATTCGCCTTCGGCTTCGGCTTCCAAGCCGGCTTCTGGGGATTGCCCTGCGCTAAGTACCGACAATTCGTTCCCGAACGATGCCCCGGAGGCTGAATGGAAGCGGCACCCTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194861-195824 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789394.1 Arthrobacter sp. HMSC08H08 Scaffold226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194861 29 100.0 32 ............................. AAGGCCCGCCTGCCGGGCTGGCCTAAGCTTCG 194922 29 100.0 32 ............................. TCGCGAATCTTGCTCTTTCGTACATTAGATCG 194983 29 93.1 18 ...........................NN NNNNNNNNNNNNNNNNNN Deletion [195030] 195030 29 100.0 32 ............................. GGTGGCATGGGCGGGCTTGGTCCTTTAAGGAC 195091 29 100.0 32 ............................. CAATCCTGACAACTCTAGAAAACGAGAACCAC 195152 29 100.0 32 ............................. GATTGGCGGCGGCGTTCCGGATAGATGCCGAC 195213 29 89.7 19 ..........................NNN NNNNNNNNNNNNNNNNNGC Deletion [195261] 195261 29 96.6 32 ............................T GCCTGGTGAGGTACGCGACGACCTGGTCAGTG 195322 29 100.0 32 ............................. ACCGCTCCGAGGCAGACTCACCCACCTACCGT 195383 29 100.0 32 ............................. CCAGCGCCCGATCTTGCGAAGCTCAGCCGAGT 195444 29 100.0 33 ............................. TCTCCGCAGGCGAAGCGGGCGGCCCGTATCAAG 195506 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [195552] 195552 29 96.6 32 N............................ TTCAACCGCTGGACGATGACTGAACTCGCGAA 195613 29 100.0 32 ............................. CGATCAGCGCATGGACCAACTATCTGACCGCA 195674 29 100.0 32 ............................. CTATTCCCGCGCGTGTCCGCGCTGTCCTGTAT 195735 29 96.6 32 ............................T ACGCGGCGACCCGCTTCACTGTCCGCGGCGCG 195796 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.8 30 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCGCCTGCGGGGATGATCCGTCCACGAGATCGTCCAGCGCAGCTCCGGAGGT # Right flank : NNNNNNNNNNNNNNNNNNNNGATCATCCCCGCAGGCGCGGGGAACTCATCCGGGCCACGAGCTGCGCCTTATCGCCAGACGGATCATCCCCGCAGGCGCGGGGAACTCAAGCTCATCTTTGAGGGCTTCGAGGTCATAGTCGGATCATCCCCGCAGGCGCGGGGAACTCTTTTCTTTGTGGCGGGAACGTTCACAGGTAGCCGGATCATCCCCGCAGGCGCGGGGAACTCGTCCATCGGGCCTGCTCGCCCGGGCTATTCAGGGATCATCCCCGCAGGCGCGGGGAACTCATNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCTGCGGGGATGATCCGCAACCTGCCCAATACCCTGTTGCCACTCATCAGAGTTCCCCGCGCCTGCGGGGATGATCCGCCCAGTCTAGTTCGTGAGCACCCGGTTTTAAAGAGTTCCCCGCGCCTGCGGGGATGATCCGGCAAGGGAAAAGTTCCAGCCACAACCCAGAAGGAGTTCC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 196114-195903 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789394.1 Arthrobacter sp. HMSC08H08 Scaffold226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196113 29 96.6 31 ............................C TGAATAGCCCGGGCGAGCAGGCCCGATGGAC 196053 29 100.0 32 ............................. GCTACCTGTGAACGTTCCCGCCACAAAGAAAA 195992 29 100.0 32 ............................. ACTATGACCTCGAAGCCCTCAAAGATGAGCTT 195931 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : GATCATCCCCGCAGGCGCGGGGAACTCCTTCTGGGTTGTGGCTGGAACTTTTCCCTTGCCGGATCATCCCCGCAGGCGCGGGGAACTCTTTAAAACCGGGTGCTCACGAACTAGACTGGGCGGATCATCCCCGCAGGCGCGGGGAACTCTGATGAGTGGCAACAGGGTATTGGGCAGGTTGCGGATCATCCCCGCAGGCGCGGGGAACNNNNNNNNNNNNNNNNNNNNA # Right flank : TCTGGCGATAAGGCGCAGCTCGTGGCCCGGATGAGTTCCCCGCGCCTGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNGGATCATCCCCGCAGGCGCGGGGAACTCCGCGCCGCGGACAGTGAAGCGGGTCGCCGCGTAGGATCATCCCCGCAGGCGCGGGGAACTCATACAGGACAGCGCGGACACGCGCGGGAATAGCGGATCATCCCCGCAGGCGCGGGGAACTCTGCGGTCAGATAGTTGGTCCATGCGCTGATCGCGGATCATCCCCGCAGGCGCGGGGAACTCTTCGCGAGTTCAGTCATCGTCCAGCGGTTGAACGGATCATCCCCGCAGGCGCGGGGAACTNNNNNNNNNNNNNNNNNNNNGATCATCCCCGCAGGCGCGGGGAACTCCTTGATACGGGCCGCCCGCTTCGCCTGCGGAGACGGATCATCCCCGCAGGCGCGGGGAACTCACTCGGCTGAGCTTCGCAAGATCGGGCGCTGGCGGATCATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 196134-196343 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV789394.1 Arthrobacter sp. HMSC08H08 Scaffold226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196134 29 93.1 32 NN........................... CAACCTGCCCAATACCCTGTTGCCACTCATCA 196195 29 100.0 32 ............................. CCCAGTCTAGTTCGTGAGCACCCGGTTTTAAA 196256 29 100.0 32 ............................. GCAAGGGAAAAGTTCCAGCCACAACCCAGAAG 196317 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : ATGATCCGCGATCAGCGCATGGACCAACTATCTGACCGCAGAGTTCCCCGCGCCTGCGGGGATGATCCGCTATTCCCGCGCGTGTCCGCGCTGTCCTGTATGAGTTCCCCGCGCCTGCGGGGATGATCCTACGCGGCGACCCGCTTCACTGTCCGCGGCGCGGAGTTCCCCGCGCCTGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNGATCATCCCCGCAGGCGCGGGGAACTCATCCGGGCCACGAGCTGCGCCTTATCGCCAGACGGATCATCCCCGCAGGCGCGGGGAACTCAAGCTCATCTTTGAGGGCTTCGAGGTCATAGTCGGATCATCCCCGCAGGCGCGGGGAACTCTTTTCTTTGTGGCGGGAACGTTCACAGGTAGCCGGATCATCCCCGCAGGCGCGGGGAACTCGTCCATCGGGCCTGCTCGCCCGGGCTATTCAGGGATCATCCCCGCAGGCGCGGGGAACTCATNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //