Array 1 307951-307783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGT010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-055 tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 307950 36 100.0 30 .................................... TTGACAATGATTACTGAAAACGTAGTGAGG 307884 36 100.0 30 .................................... TAGGCAGCCGGTCCAAAAGCCATTGGTCCA 307818 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGGTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTATGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTGTCATGCCGAGAGTTTGTTGGTTAGTTCTTAGTAGCTCCGCAAGT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 446651-447406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGT010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-055 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 446651 32 84.4 36 ........CCAT.C.................. CCAATCTTTGACGATTGTAGCATTGGCTAACGCACG 446719 32 84.4 33 ........CCAT.C.................. ATCGTTCACCTCCTAGGCTGATTTATGGGATAC 446784 32 84.4 35 ........CCAT.C.................. AATAATTTCTTTAAAGCCGTCGGCAATCAGCTGAA 446851 32 100.0 33 ................................ TATCAGAAAGGAGAAAATATGCTTTATGACAAA 446916 32 100.0 34 ................................ TCAGAAACAAATAGCTGAACAAATGAAGATTTCC 446982 32 100.0 32 ................................ AGATAATAGGCAACAAGAGGTGTCAGAGATTT 447046 32 100.0 33 ................................ GTGTATCGCAGACATGCATTGCCTTGCGTTTCG 447111 32 100.0 33 ................................ TAAAAATTTTGTCTCTGTCTCCTCGATAGATCT 447176 32 100.0 36 ................................ TAATATCCAAACTCCCCACAACCGAGACAGTTTGTC 447244 32 87.5 33 ........C..TGC.................. TGCGAGATTAACTTACTGCACATGGATTTTATC 447309 32 87.5 34 ........C..TGC.................. TGTTTTTAAAGATCGCAAACAAAAAGTAAAAACT 447375 32 84.4 0 ........CCAT.C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 92.7 34 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTCGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCA # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGCC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCCATACGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //