Array 1 2987561-2986932 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGKY01000002.1 Citrobacter koseri strain NCTC5055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2987560 28 100.0 32 ............................ AGCCATTCATTTGATGCGGACATTATCCTTAC 2987500 28 100.0 32 ............................ TCGGGCTACTCAAACGATTCGAGTAAAACTAA 2987440 28 100.0 32 ............................ CAGCGCCGCCAGCGTTCTGATGTTTTCGATGG 2987380 28 100.0 32 ............................ AGGCACATTCAGGTAATCAGCCCATGGCGTTT 2987320 28 100.0 32 ............................ AGCTACTGCAACCACGATGCCAATCACCGTAC 2987260 28 100.0 32 ............................ ACCAGCATCATTGAACCGACGGCGCAGCAGTT 2987200 28 100.0 33 ............................ AGTCACGCAGAGCAAGACCGTTATCCCACTTGT 2987139 28 100.0 32 ............................ GCTGGTGTGCTTAATGGTGATGCTGGCGACCG 2987079 28 100.0 32 ............................ AGTTATGAGCTGGCTATTGGGTGCGAAAGCAC 2987019 28 96.4 32 .........T.................. GTAACGTCCAGTCTGTAGCGTTATCGACAAAA 2986959 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACCACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGTTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTGTTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAGGATTAAAACAGAGCGCAATATACCCTTTTTTATTTTATGTTACTAACCTATTGATTTTATTGTATATATATAACTTGGGTGAAAAAGGGTCTGACAGGAAGAAGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTAATGTAGAAGGAAGGGACGCAGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3001145-2999130 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGKY01000002.1 Citrobacter koseri strain NCTC5055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3001144 28 100.0 32 ............................ TGCACTCTTCCATCAACAAGATACACCAGAAC 3001084 28 100.0 32 ............................ ATTGACGCCAACTTGTCTTCGTTACCATCGTG 3001024 28 100.0 32 ............................ TCACGAATTGTATAGCCGCCAGTGTCCGTAGG 3000964 28 100.0 32 ............................ GCTCCGGAGACGTAACCGGAACACAACTTAAA 3000904 28 100.0 33 ............................ AGTCAGCGCTGACGTAGTACCCATAGAATGTGC 3000843 28 100.0 33 ............................ CCGGACGAACCGGGCGAAGTGGTAGCAATGGGA 3000782 28 100.0 32 ............................ AGCGCATTGCTACGCACCAGTTGCACTTCCAG 3000722 28 100.0 33 ............................ ATTAGGTATCAACGATTCCTGGGGGGCGCACGG 3000661 28 100.0 32 ............................ ATAGTCGGCGGCCATTGCAATTTATTGGCGCT 3000601 28 100.0 33 ............................ CCAAAAGGTATACTCTCATACCGTTATGAAAGG 3000540 28 100.0 32 ............................ TTTACCTGATTGGTAATAATAAACGCATATTC 3000480 28 100.0 32 ............................ TGGAGCGCCACTCTTATTGTCAGAGCGAACGG 3000420 28 100.0 32 ............................ CAGACTGCGGAGCCGCTTTCGCTGGTTCCCGT 3000360 28 100.0 32 ............................ ATATTGTGCTGATGGGGGACTGGAACAGCAAT 3000300 28 100.0 32 ............................ TCACTGATACTCCAGGTTCGGGCGACCTGCTG 3000240 28 100.0 32 ............................ CAACGGCATGGTTAATATTTCCCAGGCGGTTT 3000180 28 100.0 32 ............................ ATTACGTGAATAACCCCAACTTGATGAGCCGG 3000120 28 100.0 32 ............................ GAAACCTGAAGTTGTGATGTTACATTCAGCAG 3000060 28 100.0 32 ............................ GGGTAATGAAGTCTGGTTTCCGTGATGGCGTG 3000000 28 100.0 32 ............................ GGTGGCCTGCGCTGCGGTAGTCGTCATCATTA 2999940 28 100.0 33 ............................ ACTTACGCGCCATGTAGTCGGGCATATGACTAT 2999879 28 100.0 32 ............................ TTTGGGCGTGGCTGTGCTGTGCTGGTGGATTC 2999819 28 100.0 33 ............................ GCGCGTCTGCATACCAATAAGGGAATGCACCTT 2999758 28 100.0 32 ............................ AGTGAGAGACGTTAACCGCATCATAAATGAAT 2999698 28 100.0 32 ............................ AGCCGTTAGGCTGCCCTACCACACTCACCGAT 2999638 28 100.0 32 ............................ TCCATTGCTCACCGAACGTGAAGCCGATCTCC 2999578 28 100.0 32 ............................ CGTATGTCTCCACCAGCGCAATATCTTTGCTG 2999518 28 100.0 32 ............................ TTGTTAGCGTTGAAGCAAGCCTGCTGTAAGGC 2999458 28 100.0 32 ............................ ACGCTCGATAAAGGAAGGGATGGCCTGTGTAA 2999398 28 100.0 32 ............................ TTATTTGTCGGGCACAATAAATGTCGCCTCAA 2999338 28 100.0 32 ............................ TGAATCTGCGCCAGCAGGAATACTGCCATTTC 2999278 28 100.0 32 ............................ TACAGGAGCGGAGAGTGCTCGTGTCAATATGG 2999218 28 100.0 33 ............................ ATATTGCAGGTCGCTGGACTACGCAACCCGTTC 2999157 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCACTGGTTGGCGGTGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCAGACCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCCAAACGCGCCAATATATATTATCTTGAAAAATGTCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGTTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //