Array 1 97903-99883 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNO01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2612 BCW_8422_1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97903 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97964 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98025 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98086 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98147 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98208 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98269 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98330 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98391 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98452 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98513 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98574 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98635 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98696 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98757 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98818 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98879 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98940 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99001 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99062 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99123 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99184 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99245 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99306 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99368 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99429 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99490 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99551 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99612 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99673 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99734 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99795 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99856 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116214-117506 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNO01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM2612 BCW_8422_1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116214 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116276 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116337 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116398 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116459 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116520 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116581 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116642 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116703 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116764 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116825 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116886 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116947 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117009 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117112 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117173 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117234 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117295 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117356 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117417 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117478 29 89.7 0 A..........................AC | ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.2 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGCAACCAGGCTGGATCGTAACTCCTATCCCCTC # Right flank : CGTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //