Array 1 1735-2663 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000236.1 Vibrio cholerae strain A12JL4W72 NODE_236_length_2698_cov_4.31155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1735 28 100.0 32 ............................ TGCGTCCCATTGCTTGACCTCGCTCACAGTTT 1795 28 100.0 32 ............................ AGCCTGATGGCTCAACGCCTGAAAAACCGACT 1855 28 100.0 32 ............................ ACCGAGTCAGATGCCCCATCATAGAAGTTGCA 1915 28 100.0 32 ............................ ATCATGGGGGAGCGTGAGTAATGCAATTTTTA 1975 28 100.0 32 ............................ AATGCGCTCATTTCACGCTGCGCTTGGGCGGC 2035 28 100.0 32 ............................ GGACGCAATCGCGCCCTTGAGTTGTTCGGTAA 2095 28 100.0 32 ............................ AAGGTAAGAGCAGGGCTTGGAAGGGCTACTAG 2155 28 100.0 32 ............................ TTGGTGGTTCAAAGACAAAAACATGAAACATT 2215 28 100.0 32 ............................ AAGTGAGCGTTTATTTTCTGATTGCTGGTCAA 2275 28 100.0 32 ............................ CTTGGCGCTCGCCCTATCATCTCGGTGGAAGT 2335 28 100.0 33 ............................ GTTAAGCGCCGCATTACTTACACAGCTTATTGA 2396 28 100.0 32 ............................ GCAGTGTGACGATTATTCCGCTAAGCGGCACG 2456 28 100.0 32 ............................ GGACGCGCCGAAAATCCCTTCATGCTCACATT 2516 28 100.0 32 ............................ GTCAAGCGTGGCGATTATGGGGCGATACTTTC 2576 28 100.0 32 ............................ AAGCTGTCACTGGATTTCATGTTGGAAGGCGA 2636 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TAACTCCTTACAGTGGGTTACCGATTGCTTTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1346-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000254.1 Vibrio cholerae strain A12JL4W72 NODE_254_length_2276_cov_4.79525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1345 28 100.0 32 ............................ CGCAAGAGCAAATCGAAACGGAAGAAGACTTA 1285 28 100.0 32 ............................ GGCGTAGGGGTGAGATACTCGCCGGCGTTTTA 1225 28 100.0 32 ............................ ACCAAGCAAGTTAACAATGTTATCTGCAATCT 1165 28 100.0 32 ............................ AGATGCAAGTTAACTACGCTTCGCCGGGGAGA 1105 28 100.0 32 ............................ TGAAATCTCAACCTTAAAGCAGAACATTGTCA 1045 28 100.0 32 ............................ TTTGGCCGAGTTCCTTCCTAAGCTTCCGCCAG 985 28 100.0 32 ............................ TTATTTGCCGCCTGATTTTGAGAATTTATTTA 925 28 100.0 32 ............................ TTGGCAAGCAGGTATTACCATATCCGACTCGC 865 28 100.0 32 ............................ ATTCTTTAAGTGTCGGGAAGTGGGCGCATCTG 805 28 100.0 32 ............................ AATCAATTGGTGATTTATCGCCTGGCTTTCTC 745 28 100.0 32 ............................ ACCAAATGAGCAAGCCACATCATAATCAAGCA 685 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 625 28 100.0 32 ............................ AGTCAGTCAAGTGATCATCAATACTCTTGCAC 565 28 100.0 32 ............................ GCAAATGCGGACAGTAGTGGAAAGGCTCGCAA 505 28 100.0 32 ............................ AGTTATGGGAAGGGCAGAACGGCGATCGTGAC 445 28 100.0 32 ............................ GGATTATTCTCACAACAATCAGATATCGTGAG 385 28 100.0 33 ............................ GATCTTGTAAAGATGGCGGTAGTAGATAGGTTC 324 28 100.0 32 ............................ ATCAGCTTATGCTGCTCTGTGATCACTAATTT 264 28 100.0 32 ............................ CTCCGGCACAGTCGAAGAAATCGGCTGATTAA 204 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 144 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAGAGTGGAATGCACAAATATCAATTGCGGAAAAATTGATCATCTTTACACATTCGCCGGCATTGAACTCTGCAAATATAAACTCGACAGGGAATAGCGTTCCAATAGAAACACATGTTTATAACTGGGGTAATAGAAGAAATTTATTACCAGAAGTTTCTGCTTTAAGATATTTGTATAACGATGATGAACATTTTCCAACGTATAGCATTTATGGGCAAGAATTTGCCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGAGGTGGTTTCGGTTGTTGTGATTGAGTTTAGTGGTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGTTTGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000252.1 Vibrio cholerae strain A12JL4W72 NODE_252_length_2311_cov_2.87958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151 28 100.0 32 ............................ TTAGTGCGCAAACTTCTCAAAGCGAAGGCGTT 91 28 100.0 32 ............................ ACCGCCAGTCTCCAGAAAGTCACCTAACTTAT 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCAGTGAACCGCAGTTCCCTCAAATCTTCGATTACATCAAATTTCTAAGCTGCCTGTGCGGCAGTGAACAGTTACAGACACTCACACCCGTTGATGACCAATTTCTAAGCTGCCTGTGCGGCAGTGAACTACGAGATAATGAGCAGGCTTTGTTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 520-2229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000252.1 Vibrio cholerae strain A12JL4W72 NODE_252_length_2311_cov_2.87958, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 520 28 100.0 32 ............................ TTGGTCATCAACGGGTGTGAGTGTCTGTAACT 580 28 100.0 32 ............................ TTTGATGTAATCGAAGATTTGAGGGAACTGCG 640 28 100.0 32 ............................ TTTTGGGTTGGTACCCACAATCGAGTCATAGT 700 28 100.0 32 ............................ TAATGTCGTCACTGCAAGTCGTGAATGGGTTA 760 28 100.0 32 ............................ TCAAACTGAGCGCGAAGAAATCATTCGGAACG 820 28 100.0 32 ............................ CTAACGTTACGTATTGGCGCTTGCATGATCAC 880 28 100.0 32 ............................ ATATCGAAGCCGACCGTTGTGTTATTGCGGAT 940 28 100.0 32 ............................ TAACGCACCGATCAGTGGGCATCTTTGGATCT 1000 28 100.0 32 ............................ TGCTGGTTTCGGTTCAGGGTCGCAAACGCGAT 1060 28 100.0 32 ............................ AAGTGTCCATGGTCGGGTTCGTCAAGATATAC 1120 28 100.0 32 ............................ TTTGGTTTGGCTTATGACTAGCGTAATGAGTC 1180 28 100.0 32 ............................ TTTCATCTGGCCACCCTTGTCGTAATTGTTAC 1240 28 100.0 32 ............................ CGCGCACTCTTGCGCCGTGTCGTCGTAAATCT 1300 28 100.0 32 ............................ TTCCATGAGCTATACACTGCCGTGGTGATAAA 1360 28 100.0 32 ............................ TAGAAAGTGCGTCCCGCCTTCTTTTTTATCTT 1420 28 100.0 32 ............................ TGACTCATTGAGGCTAGTGACATTCTGGTACC 1480 28 100.0 32 ............................ TTTGATCTCCAAAGGAATGCCGTTATCTGTGA 1540 28 100.0 32 ............................ ATTACGCTGCAGGTTCGCAAGCTCCGTTTCTT 1600 28 100.0 32 ............................ TTTTTCTGACTCCAGACCCCCAAACATTTTTT 1660 28 100.0 32 ............................ ATGCCGACACTTCGCCCGCCGTAAGTAACGGT 1720 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 1780 28 100.0 32 ............................ TGGTCGATGTTAAAGCGATGGGATAAAAACTC 1840 28 100.0 32 ............................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 1900 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 1960 28 100.0 32 ............................ ATGATGGTTTCCTTTTGGATAGAGTTTTCCCA 2020 28 100.0 33 ............................ ATTACGGCGAACGATGGCATTGCGGTATTCGGC 2081 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 2141 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 2201 28 92.9 0 ......................G.A... | T [2221] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCAGTGAACATAAGTTAGGTGACTTTCTGGAGACTGGCGGTTTTCTAAGCTGCCTGTGCGGCAGTGAACAACGCCTTCGCTTTGAGAAGTTTGCGCACTAATTTCTAAGCTGCCTGTGCGGCAGTGAACTATAGAATAAATCTATAAAAGTAAGTTACAACAGTCAGTTAAGGTAAAAATTGTATTTTTACCTTGTTAAAAAACACCTATTGTAACTCATTGTATTTTAGGCATATTTTTAAAGAGCGAAAAAATAGGGTTAAAACCAAGGTACTGTTGCCTTAAGACTTAGTCCATAGGTATCAAAATTTCCAAGTACAGGCACGTCCTGAATTTCACCAAATTCAAAGAATTTACGATATTTTTGTCCTGTCGAGCTACTGAGTAAGTCAAGATATGGACCTTTAATACTCTGATTCAGCATCTTCTTTTTATAACGCTGCTCACCTTCTTTATTTATACTCCCTCGTGCAACAAAGCCTGCTCATTATCTCGTA # Right flank : TCTTTATATATCTTATGGTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 779-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000400.1 Vibrio cholerae strain A12JL4W72 NODE_400_length_855_cov_1.34066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 778 28 89.3 32 ......C.G.............G..... TAACGTCGTAAAGTGGATTAAGGAGTGATTTG 718 28 92.9 32 ....G......G................ GATTGCAGGTTGGCCGTTTTTACTTTCATTAT 658 28 100.0 32 ............................ TAAGTGCGGAAGCTCTGGCGCGGTGCTGCACA 598 28 100.0 32 ............................ ACTATAATCAAGTCCTTCTTTGATTTGATTTC 538 28 100.0 32 ............................ AAGTAGCCCTGCTGGGTTAGCCTCTCGGCCAT 478 28 100.0 32 ............................ ATTGGGTTCGGGCCTGTGTAAGCGCCTGCGTT 418 28 100.0 32 ............................ GCAAGGGTTAGCGATTTCAATCACTGGCATTT 358 28 100.0 32 ............................ TCGTTAAACTGGCTGATTGACACCGCTAGACC 298 28 100.0 32 ............................ AAGAGGGATGGTTATTGACATAAGCGGTTCTA 238 28 100.0 32 ............................ AGCATGAATGCTGGCTCAGAGGTTTGTGACTT 178 28 100.0 32 ............................ AGTCGCGTTACCTTTTGACCAAATTTAACTTT 118 28 78.6 32 A...........C...T..A...G..C. TGACCAACGACGCGAACGTTACACCACAAACA 58 28 78.6 0 CC..C.A...........C.....C... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 95.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTGGGGGTAACTTGCGGTGAGAGTCAGACAGGCTGCGTAGATTAGGCTAGCACTGGATCTCATGTGGGAAGGCG # Right flank : ACCACTCAAGACGATCTGGATAGCGACAACA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75-702 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000410.1 Vibrio cholerae strain A12JL4W72 NODE_410_length_794_cov_1.96252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75 28 100.0 32 ............................ TTGTGCTTTACGATCAGGCTGAACGTAAGTGT 135 28 100.0 32 ............................ ATTATTACCACCACCAACATATCCAGGAACGA 195 28 100.0 32 ............................ TACAGACCAGAAACAAAAACGCCAGAGCCAAA 255 28 100.0 32 ............................ AGTCGTTAGCTTTAACGAACCAAACCCATACG 315 28 100.0 32 ............................ TTACGACAAATGGCCGTTTTTACTTTCATTAT 375 28 100.0 32 ............................ TGAATGGGAACATCGCGGGGAGTTACGTCGGT 435 28 100.0 32 ............................ TAATACCACGGCCAACATGCTGAACGAAAACA 495 28 100.0 32 ............................ AGAAGCAAGTTACAATCAAAACAATCTCTAGT 555 28 100.0 32 ............................ GTAACCTTTCAGCGCTTTGTCGTGCTCCTCTC 615 28 100.0 32 ............................ TTACGTGAATCATGACATGATCCGCTAATGAT 675 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : TGATGTGGGCTGACGAATCAAATGCCGAGCATGTTCACTCGGCATTTGATTCGTCAGCCCACATCATTTCTAAGCTGCCTGTGCGGCAGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 465-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000514.1 Vibrio cholerae strain A12JL4W72 NODE_514_length_506_cov_1.5066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 464 28 92.9 32 ..A......A.................. ATAATCAGGTTCCTCACAGCTTATCGAGCCGC 404 28 100.0 32 ............................ GAGACGGTCAATTTGGTTAACTCAATGCGTAA 344 28 100.0 32 ............................ ATTTCAATAAAGAAAACAAGTCACTTTCTCCT 284 28 100.0 32 ............................ AACGCATAGCACAAACGCCACCACCGAAAAAG 224 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAAGTACTATGATTAAACATAGGTTACTACGAAAATTTAAT # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTATGGCTGTTGTGTTTGAGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGCGCTAGTTGGAAAAATTGACGTGAGTGAACAAAGAGGCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 250-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000567.1 Vibrio cholerae strain A12JL4W72 NODE_567_length_451_cov_2.40432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 249 28 100.0 32 ............................ TCTTCAATTGCTGCATAAATGCAGACTTGCTC 189 28 100.0 32 ............................ AGTCGCGTTACCTTTTGACACGCCAATATCCC 129 28 100.0 32 ............................ AGTGGATGTTTCGCTCACCGACTAACATGGTC 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTGCTGTGTTTGAGTTTTGTGGTGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAGTTGCCCATCTTTTTTCGTTGATTTTTAAGCTGTTGATTTATATCAACAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATTTCGGCGATGTGGTCGAATAGGCGTTTAAGGTTCACTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1327-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPM01000183.1 Vibrio cholerae strain A12JL4W72 NODE_183_length_4979_cov_3.0472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1326 28 100.0 32 ............................ CTGACGGAGTTGGAGCAACGTGCTATGGCGGA 1266 28 100.0 32 ............................ TTATGAAGATCAAGGGCTGTTAGTTGCTGGTG 1206 28 100.0 32 ............................ TTGGACGGCTGATCAGGTCGGCAAAGCGATCG 1146 28 100.0 32 ............................ GGATTGAGGGTTGAGCCTTTTTTCGTTTTCAG 1086 28 100.0 32 ............................ AGACGCAGCGGGGGCGGCGATAATGCTTGTTA 1026 28 100.0 32 ............................ TGAGAAACGCCGCCCACCACACTAGCAATAGC 966 28 100.0 32 ............................ TTAATTAAAAAGTTCAATTGACGCTGAGAACT 906 28 100.0 32 ............................ CTTATGACACCGCAACGGGTCGTCAATGAAAT 846 28 100.0 32 ............................ TTGAAAAAAGCAAGATTTCAGACGGTTCATAT 786 28 100.0 32 ............................ TAAATGGAGCAATATCGATATCAATCGTGACG 726 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTTCCACTCGGAAAGTTTGGTTTCACAAAAGGCTGCATCATCGCTGTGATCTGGCTTTCTTTGTCGCGGACTCTTAACCGTGGCCAACTTAGCCTTGATCGTTTTGAGTTTTGAAAGCCAACTTCACAGCTTTTAGCGTTGGATGTGTGTTTGTGTGATGCTTTTGCGTAAAATGCCTTTCACGAAAATGTGTTAAAAAAGTCATTGTTAAACAATAGGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCAATGAGCTGCGATGGTTACGGCTGTTGTGTTTGAGTTTAGTGGTAGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTGAATAGGTGAATTATGAACAATACAAATAGTTTATGTGGTCTTATTATGCCCATATCTGCCATTGATGGTTGTAACGAACAGCATTGGTTAGATGTAAAACAAATATTAACGGAAGCTATAGAGTTATCTGGATACTCTGCTAATTTGGTCAGTTATGCAGATGATGTAGGAATCATTCAAAAGCGTATAATCCAAAACCTTTATGAAAATCCAATTGTTGTATGCGATGTTAGTGGTAAAAATCCAAATGTTATGTTTGAGCTTGGTATGAGATTAGCATTTGATAAGCCAACAATAATAGTCAAAGACGATAAGACTTCTTACTCTTTTGATACTTCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //