Array 1 573937-573069 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHNL01000001.1 Salinivibrio sp. YCSC6 scf7180000000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 573936 28 100.0 32 ............................ ATATTCAGCCGCGGTTATCGTCATTTCCTTTG 573876 28 100.0 32 ............................ CTTCAAATCGCAGATTTGCACGCGTCGCAGAC 573816 28 100.0 32 ............................ TCTCTAAGTTTTTCTCCTCTACGCGAGAGGAA 573756 28 100.0 32 ............................ GTTCCGAGGTGGTCGACGCTGTGAGGCTGCGC 573696 28 100.0 32 ............................ ATTGAGGATAACCAAGCATGAGCCAAAGTGTG 573636 28 100.0 32 ............................ TCCCTCGGGCCAACTCGGCTTATCTCTATGAC 573576 28 100.0 32 ............................ AAGATCAAACAAAGTGCATCACCCTCTTAACT 573516 28 100.0 32 ............................ GTGACAACTACGGCGTGCAGTTGCTCGGTAAA 573456 28 100.0 32 ............................ GCGCTGAGGCTGAGCGCATTTTTCGTCAACTC 573396 28 100.0 32 ............................ CGCCTCGGTGTGTCCGACCTGTTTGTCGCGCA 573336 28 100.0 32 ............................ ACGCAAAAAGGATTCATCACGCAGCTAACTGG 573276 28 100.0 32 ............................ TGCTGCATTGTTGGCGTCGCAAGAGTGGGATA 573216 28 100.0 32 ............................ TTGAGCTTGTCGGCAATATCAACAGGCTTCAT 573156 28 100.0 32 ............................ CGACCGCTGCAGGCGCTGAGCTTGGCGTTAGT 573096 28 71.4 0 ..............T.....TGGTTT.C | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGGACGATCTGTTACCCCGACCGTATGTTGCCGCGATTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGTAAGCGTTGGTATGATATTGGTTTGAGCCATTTTGAACGCTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATAAAACCGCATCTGTTGGATACGATCAACCTGGCACGAGATATCTGGCCAAATCAACTTGCGCAATTACCGATGCTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTTACCATCGATTCGTGAGCCAATCTAACGGAGAACTAAGCTGGCATCTTTTTACCCTTTTTTTTAGCCACTTAAAAATAAACAATAAATACAGCTAGTTACGGAATCCCTTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTATCAGATGATTGTTAGGTTATTCTATA # Right flank : TAATCTCGGAACAACCATTGTGGATGGTTCATTCTATTAGTGAGGGTGTCTTTCTTTTCTATAGAATGACTAATTAACTGTACTCTTTCATGGCTTGGTATGTAACTCGACGTTTATCGTTAGTTTTATTTTTAGCGAGTAATCAAACAGTAACTCGTGATGTGATTATCATTGCCTAGATTCTTTCAATTGATGCAGAGATTCTCTTCTACACTAGCTCAGTAAAGATGTTTTTACGGATGTTGAGTGCTAGGAGTGGGGTATGAACATCAATAACACCATGAAGTTAGTGTTCTTTATTATTGGTGCAGGAATTGTCGTTAGTTTTGTGACTATCATCCAACTAAATGGGCTAATGAATAAAGTTGATGAAATGGCACAGGTTCGGTATGCCTCGTATCAAACTGCCGATGAATTGAGGCAAAGCTCTGATGATTTAACCCGTTTAGGACGAACTTATGTTGTGACAGGGGACGATAAATACGAAAAGATGTATATGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 577149-575860 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHNL01000001.1 Salinivibrio sp. YCSC6 scf7180000000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 577148 28 100.0 32 ............................ AACTAGTGATGCTAAGCGATCGCGCCGCGCTG 577088 28 100.0 32 ............................ CAAAATCATCATTAGAAATAGAAAATATGCTT 577028 28 100.0 32 ............................ TAACGGTAAAATCTACGGTATACCGTTTAACT 576968 28 100.0 32 ............................ ACATCAACCGTTATCAGAGCAAGCACACGCTC 576908 28 100.0 32 ............................ TTTTTGGAGGCGTCATGGTGGTCACTCAAGAT 576848 28 100.0 32 ............................ ATTCTGAGTTTTGGTTTCCAGCTCCGGCGAGA 576788 28 100.0 32 ............................ GTTATCGTCGGTGAATGTTTCAACTTCGAGTT 576728 28 100.0 32 ............................ ATGTGGTACTAAAGGAACTTATTTTTTTGTGT 576668 28 100.0 33 ............................ CAATATTCTGGCGCTTGTCGCGTGCTGGCTATC 576607 28 100.0 32 ............................ TTTCATTCTTCACCCCCCCAGTACGGCTTGAT 576547 28 100.0 32 ............................ GAAGTTCGCAGCTTGAACACTAGTGGTCGCTA 576487 28 100.0 32 ............................ TTAGCGAATAACGCAGTGAACACCATTGTACT 576427 28 100.0 32 ............................ ATCTGAATGATGCCAAGCGCGGGACCGTGGCC 576367 28 100.0 32 ............................ TTTAATCATTAGATTTTCCTCGGTGCCTGATA 576307 28 100.0 32 ............................ GTTCTCAAACTCGGCCATAGCCCCTAACACAC 576247 28 100.0 32 ............................ ACTCATCTTCCAGTCGTTCCACTCAGGGTCAC 576187 28 100.0 32 ............................ TGATAGACTTTGATTTCGATTTTGTCTTTGTT 576127 28 100.0 32 ............................ TGAGCTGCGCATTGACTCAGCGCTGATTTCAG 576067 28 100.0 32 ............................ TTAACGTCAGCTTTGGTTTTCGGCGCTGACTT 576007 28 100.0 32 ............................ AAAAGGCGAAAACGTGATCGCGCTCGATGCTG 575947 28 100.0 32 ............................ AATCAAAGAAATGATGGCGATTCGTAGGCATG 575887 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGTGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAAATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACAAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAATAGGTGAGTTTTAACAGGGTAAAAAGATGATTCTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTATT # Right flank : ATACAAGCGCCGCTACAGTGTTGGATATATAAAAACTGTCAATGGGCGCCTGTCACGATTAGCGCTTATATCAACCGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATACGTTGTAATTTCTTAAAGAACAACTAATATGTTGTATGTAAGCCATAATACAATATTAAAGTTGTTTGGGGATGTGATGGTGTCACTAAAAGATATAGCGCGCGCATTGCAAGCCCGTCGTAAATCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTATCAGCGAGTAGAGGCGGGGAGTGATGTTCGGTTATCGACTTTGCTGCGCGTGCTTGAAGGGCTCGACCTGACATTAACGCTCGAGCCCAAAGCATCTCAAATGGTTGATGAGTCGGTAAACCTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCATAGCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 588274-586806 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHNL01000001.1 Salinivibrio sp. YCSC6 scf7180000000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 588273 28 96.4 32 .............T.............. AGCTGAAAGACGATTATCAGTTTTGGGTGATC 588213 28 96.4 32 .............T.............. GAACGGATGGACGTGGCACCGAATTGATAACC 588153 28 100.0 32 ............................ TACTTTCTCAGCGTCGGTGTAACCATCGCCAA 588093 28 100.0 32 ............................ TAGATGATGCTTTACAGCGGTTCTCTTTGTAT 588033 28 100.0 32 ............................ TTGATGAGCCACTTTTCGGTACGTCAGAGAAG 587973 28 100.0 32 ............................ ACCAGCCTTTTGATTGCACGTCGCGCCAAGCA 587913 28 100.0 32 ............................ AAACCGCATCATCCAATAAAGGGTTACTGTGA 587853 28 100.0 32 ............................ TTGATGCGGTGAATTTTATCAACGGCAACGAT 587793 28 100.0 32 ............................ AGTACAATGACAACGAGCTGCGCAATGTCAAA 587733 28 100.0 32 ............................ TTCATGTTCACGCAGCCAATGTTTAACCATAA 587673 28 100.0 32 ............................ TCGCTCAAATCGCGCCTGTCTTCAATCATTTT 587613 28 100.0 32 ............................ TCTCGCTGGTGGACCAAGCAAAAGCACAGATT 587553 28 96.4 32 .............T.............. AGTCATATCTGTTTCACTCATTGTTGGTTGTG 587493 28 100.0 32 ............................ GACGGTTTCACCGACGATATAAAGCGCGGTGT 587433 28 100.0 32 ............................ TCAATACAACGGTTAGCAATGCCCGGTAATTC 587373 28 100.0 32 ............................ CATAATTTCCTCGCGTATATGTCGTGACCATT 587313 28 100.0 32 ............................ AAGGGTAAGTAGTCGGTGACATGAAGCTAACA 587253 28 100.0 32 ............................ AACAGCGGATTTTTCATGGGAAGACAGCGCGC 587193 28 96.4 32 .............T.............. AGTCAAAAGCAGCATGGAAGACATCAACGAAC 587133 28 96.4 32 .............T.............. TTAACGCCGTCCAGATTTAAATATCTGTCGTC 587073 28 96.4 32 .............T.............. TATTACAAGGTTTACAGCAAGTCGGTTAAGCG 587013 28 96.4 32 .............T.............. TGGTCGTAGTTCGTTTTGAATGGTTTCAAGTG 586953 28 96.4 32 .............T.............. ATGATGGATCCGTTTTGACTTGCCGTAGAGCC 586893 28 96.4 32 .............T.............. TTGCGATCCACCATACTGAGCTATGTTTTGCT 586833 28 96.4 0 ..........................C. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTGCGATTGGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTACGGCCCACAGACGCCGAACGCAGCGCTTTGTGCTTGGTTTTACGCCCGTTTGTGCGTTCACGCCATACCTTAAAGCTGCGCGGCTTTAACTCACGGCGCATCAGCGCAATAACATCATCTTGTCGCAGGCCATAGAGTGTTTCAATGGCTTCAAAAGGAGTCCTGTCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGCTCGTTCAAAGCCATATCTGTCTCCTTATGCTGGTGGCAAATAATACGGGTAGCACAGGAAAAACCGATCAGCGTGTTCTTTCTGACCAATCAATGCTTTTACCCTTGTTTTTGGGATATTTAAAAATAAACCATAAATACAGTTAGTTACGAAAGGCCCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTATCGAACGATTGTTAGGTTATTCTATT # Right flank : CTGAAATAGTTGCTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATAGAGGAAGTAGGGGGATGGTTCAATATCAACATAAGCGCATGACTGGTATTGACCATACACGTTAATTTGGCGCATGTTTGTAGCCAAAGTTAAGCTTGCAATTGCATGCTTTTGCATAGTTAAACAGGGTTTTAACGGTTGGATTGCCTTTCCCTTTTTCAAGTCGAGAAATATTGCCTTCTTTCGTCCCCATACGTTCTGCAACCTGCTGTTGAGTTAGCCCGGCCTGCTTACGCATACTGAGTAACATATCGATCAATTCAAACTCAGGCGTCAATTCATCGTATGCTTGTTTCACGTCTGGGTTTTGTAATGCTCTCGCTTTTAATGCCTGTAAGCTATTCATTTTTCACCTCTCTCATACGCCCTGTTGCCAATGCTAAGTCTTTCTTTGGTGTCTTTTGGCTTTTCTTCACAAATGCATGAAGGACATAGATGTTGGGACCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //