Array 1 3747073-3745169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GSJ/2017-Sal-008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3747072 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3747011 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3746950 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3746889 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3746828 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3746767 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3746706 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3746644 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3746583 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3746522 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3746461 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3746400 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3746339 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3746278 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3746217 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3746156 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3746095 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3746034 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3745973 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3745912 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3745850 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3745747 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3745686 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3745625 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3745564 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3745503 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3745442 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3745381 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3745320 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3745259 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3745198 29 96.6 0 A............................ | A [3745171] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3764697-3763204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GSJ/2017-Sal-008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3764696 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3764635 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3764574 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3764513 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3764452 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3764391 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3764330 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3764269 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3764208 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3764147 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3764086 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3764025 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3763964 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3763903 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3763842 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3763781 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3763719 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3763658 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3763597 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3763536 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3763475 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3763414 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3763353 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3763292 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3763231 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //