Array 1 212465-210604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUH010000006.1 Salmonella enterica strain S6 NODE_6_length_375979_cov_127.374547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212464 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212403 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212341 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212280 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212219 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212158 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 212097 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 212036 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 211975 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 211914 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211853 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211792 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211731 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211670 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211609 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211548 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211487 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211426 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211365 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211304 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211243 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211182 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 211121 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 211060 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 210999 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 210938 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 210877 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 210816 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 210755 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 210694 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 210633 29 93.1 0 A...........T................ | A [210606] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229926-229105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUH010000006.1 Salmonella enterica strain S6 NODE_6_length_375979_cov_127.374547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229925 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229864 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229803 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229742 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229681 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 229620 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229559 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229498 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229437 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229376 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229315 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 229254 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 229193 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 229132 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //