Array 1 1710127-1707446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077422.1 Dickeya dadantii strain M2-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1710126 32 100.0 33 ................................ TAACTCGCGTTACCATCGGCGGTAGCAACTCAA 1710061 32 100.0 34 ................................ GACATTGGGTGTGGTGGGCTGCCGCAGGAAAGTT 1709995 32 100.0 33 ................................ TGCACCTGTTTGAGTTTTTGATATTCGCAGTCG 1709930 32 100.0 34 ................................ AAAAGCGAAGGGCAGCAAACCGGTGAAAAAAGAG 1709864 32 100.0 35 ................................ TTCCACCGGATATCGCCAGTACCAGCACCGCTATT 1709797 32 100.0 35 ................................ CGGCTCTTGCTGAGAGTTTTTAATCTCTTTAACGA 1709730 32 100.0 35 ................................ GCTGATGCAATAGCCGAGTTTATCAAACTGCGCCG 1709663 32 100.0 35 ................................ GGCCGCAAAACCATCTACTTACGCGACCGTAAAAG 1709596 32 100.0 34 ................................ TGCGCGTGGCGTACCGACTGATTAACACTTTGCC 1709530 32 100.0 33 ................................ AGGGTTCGACCGGTCGGGCGTCCATACGCGTTG 1709465 32 100.0 35 ................................ CAACAGGCCTTTTGCTTGCAAACGCAGCGCTTTAT 1709398 32 100.0 33 ................................ AAATGTGAAACCGCGTTGCCGGGCGACATCAGG 1709333 32 100.0 35 ................................ AACGGGCCTCATCACGGCGAAATGCTTTATTGGAA 1709266 32 100.0 33 ................................ CTTGAATGGGTGGATTGTGTAGCACCCGATCCG 1709201 32 100.0 34 ................................ TGCGCGTGGCGTACCGACTGATTAACACTTTGCC 1709135 32 100.0 34 ................................ ATTACCGATGTGCTTATACCGGCCGCGACATACC 1709069 32 100.0 36 ................................ TCAACTGACCTCAGAGGCCAGCTCGTGCAGATCAAG 1709001 32 100.0 34 ................................ TCTGGACTCTCGCCGATCTGGATGAAGGCTCCGC 1708935 32 100.0 34 ................................ TCGCGCGTTCCGGCTCGTCCGCCCGCATCCCAAT 1708869 32 100.0 35 ................................ AAAACTACGGCAACACGTCGCGTATGTCAAATCCG 1708802 32 100.0 36 ................................ GCGACGTCAACGCGCGTGTTCAGTGCGACATCCGCG 1708734 32 100.0 34 ................................ TCAACGTCACCCATCGGCACCGCGATTTTAGTCA 1708668 32 100.0 34 ................................ GGCGCTGTCATCGCAACCGCCATTCTCGAGATGG 1708602 32 100.0 35 ................................ CCTGCCGCATCCGTCGTGACCACCGAACACATCAG 1708535 32 100.0 33 ................................ CTATCAGGTGCACCTGTGATGCATCGGCCACGC 1708470 32 100.0 35 ................................ TCAAATGCGCTTGAGGCCCACATAAACGCTATATC 1708403 32 100.0 34 ................................ CCAGAATTTATATTCATCCAGCGACATTTCAACG 1708337 32 100.0 35 ................................ CTGACCTGGAAGACGTAGCCGCCGCATAGCGCCGC 1708270 32 100.0 33 ................................ TATACCGGCGCGACGGATGAAATGGACATGGCC 1708205 32 100.0 35 ................................ GGTTGTAGCGCCCGGAGTCGAACCGGGCGGCGGGT 1708138 32 100.0 35 ................................ GTTCGTGCTCGATGCAGACAAAGAACGTGACGCGA 1708071 32 96.9 33 ............A................... CCAACCGAACTTGATGGGCTGTCACTTAGCGGT 1708006 32 96.9 34 ............A................... CGTGATGTCGTAGTGCAAGCAGACGCGCAGATAG 1707940 32 96.9 34 ............A................... CCTGTAAACCGCACCTTATCTGCGCCCGGTTCTG 1707874 32 100.0 34 ................................ AGCATCCAGCGTGCCTTTGTTGATGTAAGCAATC 1707808 32 100.0 34 ................................ CCGGCGGCATCCGTCGTGACCGCCGAATACATCA 1707742 32 93.8 32 .................T..C........... CCGACAATGTTTGATGATGTTGACGGACCCAT 1707678 32 93.8 34 CG.............................. AACAGAGAAGCGCCGGGTTGCGCGCCCCAGGTCC 1707612 32 93.8 33 ........C..............A........ AAGTGGAACGAAACGCATATCCCTGTAAGCCAG 1707547 32 96.9 34 ...A............................ TGCCAGACATGCCAGATTGCTGCATCTGTCTCCT 1707481 32 90.6 0 ......................C......T.T | C,ACA [1707453,1707457] ========== ====== ====== ====== ================================ ==================================== ================== 41 32 99.0 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : AGCATATCAACCGGAGAAGCCGCTGTATGATGGTACTCATCACTTACGATGTGTCGCTGGAAGATGCCAACGGCCCCCGCCGCCTGCGACAACTGGCCAAAATCTGCCTGGACTACGGTGTGCGGGTGCAATACTCGGTATTCGAGTGCGACGTTGACGCTGCGCAATGGGTGGTGTTGCGCCAGAAGCTGCTTACCACCTATGACGAACGTGTCGACAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCACCACGGCGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACTCTGCGCTAACCCCCGGTACTCATCATTTTCCCGGCCGGTTGGCGCAATCTCATCCAATTGAATGATAAACAATTTATTTCTGTACTTCACCGTTGCGCCCTCAGCTTCCTCCCGCAGACATGACGTTGGCGTTCTTTTAGCGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : TTGATTCGCCGGTTAACGCGGCGATGGCGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGCAGGTGCGCGGACAAGGCATCCATCAGCATTACCACCACCACCAGAATCAGGGTGATGAACATCACCACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGATCGCACATTGGACTCCATCTGGTACAGGCTTAGTGCCAGAAAGGTAGGAAACGACTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACCGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCCTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAGATCGCCATGTCGATGCCGCGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3999184-3998675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077422.1 Dickeya dadantii strain M2-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3999183 28 100.0 32 ............................ AAGACCAATAGCGGCCGCGGTACCCATGGATG 3999123 28 100.0 32 ............................ AGTTCACGCACGAGCGTTACCCGCGCAAACGT 3999063 28 100.0 32 ............................ CATTTGGGTGATGGTGCGAACGCGACTTTGTT 3999003 28 100.0 32 ............................ AGTAAGTCGGCTCTGTATCGATATTCCCGTTG 3998943 28 100.0 32 ............................ GCATCCGATGCGGACAAAAAGCGGACTAGAGA 3998883 28 96.4 32 ....................T....... GTCGGGGAACACGACCACCCGCGCGTCAGCAG 3998823 28 100.0 32 ............................ GGCACTACAGGCAGGGATGGGGCGGCGAATAG 3998763 28 92.9 32 ...T.......C................ GGTTCGAGTCCGGCGCTATTCATCCCGCCGCT 3998703 27 78.6 0 ...........CAC.........-..CC | GG [3998680] ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGCGCGAAGCACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGGCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACACACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACATGGCCCATTGCAGGATAAACCGCTCGCCGGGGCGTTCTCCAGCTACGGATTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTAAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGATGATTTTTATTTAAAAATCAGGTGGTAAGCGAATATTTACTACG # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAGGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATAAAGTTGCAAAGAAACGACACCGTTTATCCCGCACGAAATGAACCTCCGACCCGGCATACATGTGACAAAGGATTCACTCACCAGCCTGACATAAATCCGCCAATAACTAAAACCCCCCGCTGTGTGTCAACAGCGCCAGCCCTTCACGGCGGGCTTCGCCGTTTCCTGCGCAGGAAAAAAATCCCCCAGCCGTTGCCGGCAGGGGGAAAAGGCGTAAAAAAGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4007880-4008808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077422.1 Dickeya dadantii strain M2-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4007880 28 100.0 32 ............................ GCCAGAAGTTGAAAGGGGATGCCCTCCCCGTT 4007940 28 100.0 32 ............................ GCCATCAGTACGCCCACCGAGCATTTTCATCT 4008000 28 100.0 32 ............................ GTTGATTCAGAGGCCATGCTCTTCGCCTCCGG 4008060 28 100.0 32 ............................ AATCGTCAACGAGTTGATGTAATCAGCGACAG 4008120 28 100.0 33 ............................ ATCGAAACGAAGGCCACGAATGGCGGACGAAAA 4008181 28 100.0 32 ............................ GGACGTAGGCAAACTGGCCGCCACCAAGCGCA 4008241 28 100.0 32 ............................ ATCACTAGCGCTGACTGCGGAACCATCCGGCA 4008301 28 100.0 32 ............................ GCCTGCTGTGCGCGCTGCTGCTGGCCTTCTTG 4008361 28 100.0 32 ............................ ATTAGAGCCAAGAGTAGCGGAGATCTCGTCGA 4008421 28 100.0 32 ............................ AAGCCGTAGACGCTTTTATTTGCGCGGAGGAA 4008481 28 100.0 32 ............................ TACGGTGAAACGATGGCATTCAACATCCGATC 4008541 28 100.0 32 ............................ GTACTGAGCCGAAAGAACTCTTTGGCTTAATG 4008601 28 100.0 32 ............................ AAGCGGAACATCCCCGTTCCACCACATGCGCA 4008661 28 100.0 32 ............................ AGTCCAGGTCACCGTCCAGCGGAATGACTACC 4008721 28 100.0 32 ............................ GAGATAGCTATCGCCATCGATAAACATGTTGA 4008781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGTTGCAGCAAGGCGGCGACGCAGCGAATCCCCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATCCACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCTATACCCTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTAAAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACG # Right flank : AGGGCTGACGGCGCTGCCGGACGGCCTGCAGGTGTTCACTACCGCACAGGCAGTATCCCTCCCCGGCCGGGGAGGGATGCGTCGGTCAGAACGACGTCCAGTCGTCATTGGTGCCGGCGGTGGCGGCGGCACGTTTTTCGGTCACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCCGCCCTGCGGCGTCAGGCGGAAGGCGCTGACCGCTTCGGCCAGCAGCGACGCCTGCGATTGCAGCGACAGCGCGGCGGACGCCGACTCTTCCACCAGCGCCGCGTTCTGCTGGGTGGTAGTGTCGATTTGCCCGATAGCGATGTTGATCTGGCTGATGCCGTCGCTCTGCTCATGGCTGGCCTGCGAGATCTCGTTGATGATGCTATGCACATCTTTAACGTGACCGGTTAAGCCATCCATGGTGGATTCGGCGGTATCCACCAGTTGCATCCCTTCCTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //