Array 1 1087-2459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDA01000020.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000225 contig0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1087 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1148 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 1209 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 1270 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 1331 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 1392 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 1453 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 1514 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 1575 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 1636 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 1697 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 1758 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 1819 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 1880 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 1941 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 2002 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 2063 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 2124 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 2186 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 2247 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2308 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2369 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 2430 29 96.6 0 ...............A............. | A [2457] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16412-15287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDA01000079.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000225 contig0078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16411 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 16350 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 16289 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 16228 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 16167 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 16106 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 16045 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 15984 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 15923 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 15862 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 15801 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 15740 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 15679 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 15618 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 15557 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 15496 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 15435 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 15374 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 15314 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //