Array 1 24105-24495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFO010000028.1 Bacteroides pyogenes strain DD52 JD9_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 24105 36 100.0 30 .................................... GTTTGCATTTTCTTCACGACTAATGCAGTT 24171 36 100.0 30 .................................... TAGCGGCTAACTTAGCCATGTCGATCGGCG 24237 36 100.0 30 .................................... GCAAGCACAACAGGAAAAGGTGCGAATAAA 24303 36 100.0 30 .................................... ATAGTGCTAATTCTCCTTTAGCATCAAAAT 24369 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 24460 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 6 36 94.9 35 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : ACGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTT # Right flank : TGTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACCCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCTGACGAAGAAAAGAGAAACACCGCTATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAACGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAAATGCTGAACCTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCCGCCATAAACGGTAACAAATGTTACATTCATCGCCCGGATAATGAGATAATAGAAAGCGGTTTAGAAGATTTACGTAAATTTTGT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 47363-50944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFO010000009.1 Bacteroides pyogenes strain DD52 JD9_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 47363 47 100.0 30 ............................................... AGCCTATTGCAAGCGAAAGGCATACCCACG 47440 47 100.0 30 ............................................... CGAAAGATTGAGACCGTTTGCATCAACTTC 47517 47 100.0 29 ............................................... ATAACCTTGCCTTCATACTCAGTCCTCCG 47593 47 100.0 29 ............................................... ACAAAGAAAATAGTCTCTCCCATATATAC 47669 47 100.0 29 ............................................... TGGTATCTGAAAGAGCATCCTCCAGCGAC 47745 47 100.0 30 ............................................... CTGCTCTACCATCGGCATTACTCTGTCCAG 47822 47 100.0 30 ............................................... ATTCATTCGTTCGCCAACCCTGTAGCTCTC 47899 47 100.0 30 ............................................... TGGAGCAGATGATTATATCAGTATTAGGGT 47976 47 100.0 29 ............................................... CCTTTTCCGTCCCCTGTATTGCTGACGGT 48052 47 100.0 30 ............................................... CCCTTTTTGTTGAATCTTTGAAAAAAGTTC 48129 47 100.0 30 ............................................... CCTTTTGCTTTGTCTTTCTGTACAATATAG 48206 47 100.0 30 ............................................... ACTATATTCCCGATAGAGTTCATTAATGGG 48283 47 100.0 30 ............................................... GGTCGCTCTCAATACATCAACAACACATAA 48360 47 100.0 30 ............................................... GGGCGTTCTTGGCTACTGCAAGTTCATACA 48437 47 100.0 30 ............................................... CGAGTACACATTTGGCATTAAAAGATTCAT 48514 47 100.0 30 ............................................... AAGCAATTCTTTATACATCTCTGTTATTTT 48591 47 100.0 30 ............................................... GTAGTACCAATCGCGGTCTTCTTTATTGTC 48668 47 100.0 30 ............................................... ACAATTTGGGTGCATTGTTTTTGCCCTCAT 48745 47 100.0 30 ............................................... ACCCTACCTTTATACAACTTCGAGTGCTTT 48822 47 100.0 30 ............................................... GTATAAATCTAATATCAGTTGCTACTAATC 48899 47 100.0 30 ............................................... TTACAATCGCTATGACTATTACCATAATTA 48976 47 100.0 30 ............................................... TTCTCGCATGATTTCTTTTTCATCCTTTCG 49053 47 100.0 30 ............................................... GTGAGTATCTCGCGGAGTTTGTTTGCATAT 49130 47 100.0 29 ............................................... CCTTTCACAAGCAGCTCCCAAGTTTACTT 49206 47 100.0 30 ............................................... TCTTCAATCGCAATCGTTCTACTCTTAATA 49283 47 100.0 30 ............................................... AACGCAAATCAAGTTCCTCAATGACTGGGT 49360 47 100.0 30 ............................................... CTCGTCGTGTATGGCTTCGAGTATGATATT 49437 47 100.0 30 ............................................... TTAAATATATATTGCCTTCAATTCAATTAT 49514 47 100.0 29 ............................................... GCATATACTGTTAGACCGTATGGAAAGAG 49590 47 100.0 30 ............................................... CGTTCGTTGGTTCGTTCGTTGGTGCAAAGG 49667 47 100.0 29 ............................................... CCATTTTGGCGGGGCCTATCTTTCGCAGC 49743 47 100.0 30 ............................................... TACATTGATAGAGTCTAATCCTACTACATT 49820 47 100.0 30 ............................................... GACACGGGCGACGGCGTTTGCATAGACGGT 49897 47 100.0 30 ............................................... GATAGTTTGGGAGCAACTTTGTCGAAGTCC 49974 47 100.0 30 ............................................... AGATGCTGAACAGCTTACGAAAGAGGTACA 50051 47 100.0 30 ............................................... AAAAGTTAAAGGACTTTCGTTTGATATGAC 50128 47 100.0 30 ............................................... GCGTCCGATAGCGGATAACATGGCGGTCAA 50205 47 100.0 29 ............................................... TAAGTCCGACAATATGTTTTTCAACGAGA 50281 47 100.0 30 ............................................... TGTTTATCAAATAGCAATCAAATCTTTTTA 50358 47 100.0 30 ............................................... CCAATATCTCTCCATTCTATTCAAAGTCTT 50435 47 100.0 30 ............................................... ATTCCTTTAACAATTGTCTTATTGTCATAG 50512 47 100.0 30 ............................................... GCCCGTCTGTATGATGTTTACACGTCAGCG 50589 47 100.0 30 ............................................... ACATCTTCCCGAGGCTGGAACGGGCCGTCT 50666 47 100.0 30 ............................................... ATAATTATTTATTTATTTCTTTCCATAAGA 50743 47 100.0 30 ............................................... TCCGTAAATCGTCACTCCGTCAATCGCATC 50820 47 100.0 29 ............................................... AGCAAGATCCTCACAAGGAAAATAGCGCT 50896 47 80.9 0 ..............C...............C.GCC.GG...T....A | TG [50935] ========== ====== ====== ====== =============================================== ============================== ================== 47 47 99.6 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTACCAACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGGAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGGCATTGTGCTAGTAGTGAGAACGCAGCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAACAAAAAATCCCGTACTTACACGGGATTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCTTGTTAATCTGCTGATTATTAGTTGTCTACTCTGATTCT # Right flank : AAAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCAGGCGTCATCTCCGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCTCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAAATGCTTACGGCGTAGGCGTGACTCAACATACGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //