Array 1 68110-67836 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTH01000021.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x str. 1369-73 ssp-II_O56_mirahybrid1_c22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68109 29 100.0 33 ............................. GGATGTATTTAGTGATTTTATTACCCTGTCTGC 68047 29 100.0 32 ............................. AGAGGGGAAAAAATCAGCGATGGCGAGCTAAT 67986 29 96.6 32 ...................A......... TCAATATTCAAAACGAGCAAATTCGACTTGCT 67925 29 100.0 32 ............................. GTATATGAAAATGAGATCAAAAAAAACAGCAT 67864 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTTCCTTGAGCTCTTTGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGCTGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATGGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCGGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAGCAGCGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCGGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75517-74143 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTH01000019.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x str. 1369-73 ssp-II_O56_mirahybrid1_c20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75516 29 100.0 32 ............................. GTTTTTCTCTTGAGCCAGGATTCGCTTGCTTG 75455 29 100.0 32 ............................. CTGCGCCCGATAGTTATCTCAATATGTTTCTG 75394 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCAGTGTA 75333 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTC 75272 29 100.0 32 ............................. GAGAACAAAAAAACCCAGGTGATTCTGTTGAT 75211 29 100.0 32 ............................. GTACTGGAGAGGTAAATATTCCAGTTACAGAT 75150 29 100.0 32 ............................. AATTATGAGTTCACCAAATCCTATATTTGGTC 75089 29 100.0 32 ............................. CTGCTCGCAGTTATTGGCGTAATAGGCCGGGC 75028 29 100.0 32 ............................. CAAAAAACATTCGCAAAAATAGCGGCGTGGCT 74967 29 100.0 32 ............................. ACCGACCCCAAAAACTTCGCTAAGGCCGTTGA 74906 29 96.6 32 ............T................ CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA 74845 29 96.6 32 ............T................ GCGGAAATAGACGCGCGCGGACCCAGTAACGC 74784 29 96.6 33 ............T................ CCAGATTCACGATGACATAAAAAACGAGAGAGC 74722 29 96.6 32 ............T................ CAGAAGTACGATTCTTCACAACAATATCGGCA 74661 29 96.6 32 ............T................ CCATCCAGCAAATCCTTCCAGACCCAACCAAA 74600 29 93.1 33 ............T....A........... CGCGATAGCGTCCGCTTTGCCTTTGTCGGTCGC 74538 29 96.6 33 ............T................ GCCCACGCCTCGACGCGGCACATAAAATCGTGC 74476 29 100.0 32 ............................. CGCGCGTTAAATGCTGGTGGGGTGTGGCTGCG 74415 29 100.0 32 ............................. ACGCGTATGACACCGCCGACGACAGCTATCTG 74354 29 100.0 32 ............................. CGTTGGTTTAGGTGTGCATTCAACTTAAAATT 74293 29 100.0 32 ............................. CTACCGCTACCCAATGGGCGCATGAAAAACAT 74232 29 100.0 32 ............................. GCGGCAGCGGATAAAGCGGCGCAACAGGCTAA 74171 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTAGCCGCCGGAGAAATCGAACGCCCTCAACCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATATCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACAGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCAGGGGTTTATGTTGGCGATACATCGAAACGCATTCGAGAGATGATCTGGCAACAGATTACACAACTGGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATTTGGATGGACTTAGATTAGTCTCTTTTCTTCCCCTTTAGAATCAATGAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTAACGTTGGTAGTTTGTTGAGTGGTAAAAAAGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTTCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92897-91588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHTH01000019.1 Salmonella enterica subsp. salamae serovar 56:z10:e,n,x str. 1369-73 ssp-II_O56_mirahybrid1_c20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92896 29 100.0 32 ............................. CCCGGTGCGCTGCGCTGGCTGCTGAGAACGCG 92835 29 100.0 32 ............................. TATTCCCCTTCAGCAACTCTTTCCGATAGTTC 92774 29 100.0 32 ............................. CCTGGAATACTAACCCCTGGGTGTGGGTGATT 92713 29 100.0 32 ............................. GCATAAATTGACGTATTTAGCGTGCATTCCAG 92652 29 100.0 32 ............................. TCTAGCGCTGCATCCGGTGACGCCGGTGTGTA 92591 29 100.0 32 ............................. GTTTAGTGCTGCATCGCGTTCCTGATTCAGCA 92530 29 100.0 32 ............................. AAATAACGGCACACCACCTTCCCACCCTTCCC 92469 29 100.0 32 ............................. CCCTACGCGCTAATTATGCGGCTAATACAGGC 92408 29 100.0 32 ............................. GTTCTTTGTTGCTGGAGGCTCGCCGTGGCTAA 92347 29 100.0 32 ............................. CAGCAGACGAATATTTTAAACGCAATATTGCT 92286 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGTTCTTTAAA 92225 29 100.0 32 ............................. CGTAGCGTACGCGGATAACCCAGACTCCGGTT 92164 29 100.0 32 ............................. CGGCTTGACCACATCAAACCGTTTATCGCCCT 92103 29 100.0 32 ............................. AATTAAATCGCCAACGGTCTGGCGCCACGGCG 92042 29 100.0 32 ............................. CCTTCACGAACCGCGTTAATTACGCGATCGAG 91981 29 100.0 32 ............................. CCGGCGGCGCGTAAATTGTTGGCCGGCAATCC 91920 29 100.0 32 ............................. CCATCAAAACATACTGTGAAGGGCCGGTTAAT 91859 29 100.0 32 ............................. GATTGCTCGGGCGGTATATCCCTGCCGATGTA 91798 29 100.0 32 ............................. TCTGACCGTTCGTAGCGTTGGCAGGCTTTGTT 91737 29 100.0 32 ............................. CACCCTTGTGAAAAGCCAGCAGCCATGATGGA 91676 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 91615 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAATAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAATGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGACAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAGAACGCGTTGGCGATGGGGAGCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //