Array 1 210117-208377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNG01000001.1 Salmonella enterica strain BCW_4940 NODE_1_length_665984_cov_4.12622, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210116 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210055 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 209994 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 209933 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 209872 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 209811 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 209750 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 209689 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 209628 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209567 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209506 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209445 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209384 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209323 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209262 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209201 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209140 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209079 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209017 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 208955 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 208894 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 208833 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 208772 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 208711 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208650 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208589 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208528 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208467 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208406 29 100.0 0 ............................. | A [208379] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228656-226798 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNG01000001.1 Salmonella enterica strain BCW_4940 NODE_1_length_665984_cov_4.12622, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228655 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228594 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228533 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228472 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228411 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228350 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228289 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228228 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228167 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228106 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228045 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 227984 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 227923 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 227862 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 227801 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 227740 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 227679 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 227618 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227557 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227496 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227435 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227374 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227252 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227191 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227130 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227069 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227008 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 226947 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 226886 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 226825 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //