Array 1 1560-1792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOML010000068.1 Acidithiobacillus caldus strain F Contig68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 1560 28 100.0 45 ............................ CGCGTCCACATTGCTGCGACCTCGCAAGAAGCGCGGGTGGCACTA 1633 28 100.0 39 ............................ TGCTCTGTTTCGCTCATGCTATTACAGTACACTGCTGAG 1700 28 96.4 37 ................C........... ATTGGCTCGTCGTCAATCCGGGCGCAGAGACCCTATG 1765 28 78.6 0 ...G............C..C.A.A...A | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 93.8 41 GCCATTGCAGGGGCTTGGTACTTGCAAG # Left flank : GGCGCTGCATTGGGCGGCTTGCAAGTGTGGGACGGCAGTTTTGCATTTGTCGGGAGAGGAAACGGTCAAATCCTGTGCGCTGTGTCGCGGCGTGTCGATGGTTACTGACCCAGAAGATGGCCAGATGCTGTATTGCGAAGACTGCGGCAGCACGGTAGATCGCAAGAAGAACGGTGCGGCCAATGCCTGGAAGCTGGCAAAGGAAAATCTGGAGCCTTTGGTGACGGAGTATTGGGAAACCGTGCTGACCAAAACGCAGGAAGCGGCGCAGCGTAAGGTGGAAAAGGCGCAGAAGATGGCGGCGGGTCGGAAAGCGCGTGCAGCCGCGCGAAAGGGAGTCGACGGCGCAGAGTCGGCAGATTCGCGCGTGTGAGGAATCAAGAGGTTAGACGATTTTATGCGGGGTATGGGCGAGCCCGTTGGTGTTGTGGATGCCGGTTCGCGGAAAGTGGCAGGAAAAGAGTTGCAAAGCCACAGGATGTGGAGGTAGAGTAGCAATA # Right flank : AGCAAGAAAGTTTTGACACGCCAGAGTGGAATTGACGATACTTACAGATAAGTGAGTATGCTTCCGGATATTCATGCCCAGCTCCACCCCAGAAAAAAACCGTGAACACGTCAACACGCATCGCGCCCGGATGCGCGAGGCGGGATACGTGCTGCTGAGCAACGTCTGGATCCCCCAGGCACTGCACAAGGCCATTGCCCGACGGGCTAAGCAGGAGAACAAACCGATCTGGGTGATCGTAGCCGAAGCCCTGGCCAAAGCATTTTCTGAAACATAGAAAAAGGCGCTCTGGCTTGACAGTCCGGGTTTGCATTTACACACTTACAGGTAAGTATGTTTGGTGTTTGTTTTGGATACGGCACCAAGGGGATAACAGGAGGTTCCATGTATCCACCGCTGATTCGGCGATTGTTGCAGGACCGGGGGGCGGACCCCGACGACGCGCTCGATCTGTCCACCATCTCGCCCCCGTTGGGGCCGCAAGGATTCCTGGGCATGAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATTGCAGGGGCTTGGTACTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2044-1047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOML010000245.1 Acidithiobacillus caldus strain F Contig245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2043 28 100.0 33 ............................ GTGGGCATCTCCCAATCGCGCGCGCAGGTGTGC 1982 28 92.9 33 .......................G...T GGCTTCGAGACCGACGCGACCGTGGTGCAGGCC 1921 28 100.0 33 ............................ GGGATCAGCGGCGTACTCATCCACTTGTGGGCC 1860 28 100.0 33 ............................ TTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 1799 28 92.9 27 ..........T........T........ TGATCACCGGGACAAAACCGGGCGGCG 1745 28 89.3 32 ...........A..T..........C.. GCTCCGGACTCCGCTCGTACCCGTCATTCACC 1685 28 96.4 33 .G.......................... TCATCGCTATACCAATGCGCAAGGGGCGGACCC 1624 28 96.4 33 .G.......................... CGCCTTGAGCTCCCTGTTCCGCCATGTGGAGGA 1563 28 96.4 33 .............A.............. GGGCGCTGCGGTGGGGGATGACATTTCCCAAAA 1502 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 1441 28 100.0 33 ............................ GAGAAAGCAGGAGATTGGAGAGCGTTCTCTATT 1380 28 92.9 33 ..........T..A.............. CCGAGCCAGCACCCGACTCTTGATAGCGAATCT 1319 28 85.7 33 ..A..........AT........G.... GCAACCGTACCGGACCCCGCGCCGCCCACGCTA 1258 28 85.7 33 ..A..........AT........G.... AGTCGATATCAGCGGAAACGCTTCGGACATTGC 1197 28 82.1 33 .C...........AT....A...G.... ACAAGCGGCCAGGTCTCCCGTCATGCTCAAGAA 1136 28 96.4 34 .............A.............. GTACACCATGGCGCAAATAATCGACTTTCTGGCC 1074 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 94.3 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGAGGATGCGGAGGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTACTGGCTGGTCTGCGCTACTTCGCCAGCGATCCGGTCATCGGTGCGCACAAGGCGGTCGGGCGCGGTGAGCTGGCGATGGAACTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGCCCCCAAAGCGCGGAAGCCGGAACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGTCTGCTGGCCGAGCATCTATCCGAATTCGACCGGCTGGCGAAGGCGGGTTTTCCGGGGATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : GGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTAGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCGTGCACCTGCAGGTATTCCTGGTCGTGCTCGACCAGAAGCATCCCGTAAACCTGCAGGGGCTGGCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGACCGTGTTGCGGACGTTTGCCCGAGCACGCGAACACCGTTTTCTTCGAGCATCTGCACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCTTT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 3372-3106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOML010000245.1 Acidithiobacillus caldus strain F Contig245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 3371 27 100.0 34 ........................... CGAGGTGCAGTCGAGGCTCCCGCTACCAGCCGAC 3310 27 100.0 34 ........................... CTAATGATGCTGAAAAGTTGGGGCAGGTCTGGTC 3249 27 100.0 34 ........................... CTCCTTGCAGTCCGCATTTCGCATTTGCTGCGTT 3188 27 81.5 28 T......T...A............GG. TTCGCATTTCGCATTTGCCGCGGGCATG A [3172] 3132 27 85.2 0 .............CG.......G.T.. | ========== ====== ====== ====== =========================== ================================== ================== 5 27 93.3 33 GTCGTCCCCGCGTGTGCGGGGGAAATC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGTCGGTACAAGGCTTTTGGCTGCGGAATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGTCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGG # Right flank : GCACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGGACCATACGGGTGGTGCAGGAAGCCATGAAAGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGGAACCCTCCCAGGCCGGAGCAACGGCAAAATGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGATCCCCAACGCGCAGGGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //