Array 1 91952-91250 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTUL010000009.1 Escherichia coli strain 134F3 contig_00009, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     91951	    29	 100.0	    33	.............................	TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC	
     91889	    29	 100.0	    33	.............................	CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC	
     91827	    29	 100.0	    32	.............................	TCAGCTTTATAAATCCGGAGATACGGAAACTA 	
     91766	    29	 100.0	    32	.............................	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 	
     91705	    29	 100.0	    32	.............................	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 	
     91644	    29	 100.0	    32	.............................	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT 	
     91583	    29	 100.0	    32	.............................	TTGAACTCACCACGATTGTTAATATGGACGAT 	
     91522	    29	 100.0	    32	.............................	GGGGGCGCATGACCGTAAACATTATCCCCCGG 	
     91461	    29	 100.0	    32	.............................	GGAGTTCAGACATAGGTGGAATGATGGACTAC 	
     91400	    29	  93.1	    32	............TT...............	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 	
     91339	    29	  96.6	    32	.................A...........	GCAACGACGGTGAGATTTCACGCCTGACGCTG 	
     91278	    29	  89.7	     0	.T.........AT................	|                                	
==========	======	======	======	=============================	=================================	==================
        12	    29	  98.3	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   CGTGCTTGCCGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAAACGGGATTTGAGTTCCAGACATTTGGGTTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCTCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGAGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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