Array 1 947623-949115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053294.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SH160 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 947623 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 947684 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 947745 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 947806 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 947867 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 947928 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 947989 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948050 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948111 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948172 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948233 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948294 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948355 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948416 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948477 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948538 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948600 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 948661 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 948722 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 948783 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 948844 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 948905 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 948966 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949027 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949088 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965247-967211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053294.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SH160 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965247 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965308 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965369 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965430 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965491 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965552 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 965613 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 965675 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 965736 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 965797 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 965858 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 965919 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 965980 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966041 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966102 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966163 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966224 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966285 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966346 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966407 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966468 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966530 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 966633 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 966694 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 966755 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 966816 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 966877 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 966938 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 966999 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967060 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967121 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967182 29 96.6 0 A............................ | A [967208] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //