Array 1 8023-9502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGY01000110.1 Xanthomonas oryzae pv. oryzae strain IXO685 contig_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8023 31 100.0 34 ............................... ATGGCCTTGCGCCCGATCTTGCGGCACGCGACCT 8088 31 100.0 35 ............................... GTCGCATACTCGCTGCGCCCGTCACGCGCACCGGG 8154 31 100.0 34 ............................... TCCAAACGCACATCCAGGGGATATGCAAACCCGC 8219 31 100.0 35 ............................... ATGAAGGGCCAGAGCATCGGCGGCATGCTCGGTAA 8285 31 100.0 35 ............................... CCAATTCGGCTGCAGCGCGAATGCGATGACTACCT 8351 31 100.0 35 ............................... ATCGGCCAGGAGGAATAACAACCGCAGCCTTAGCA 8417 31 100.0 34 ............................... ACTGTTTGAGAGTCGCCGGCGCGAATACGGCCGC 8482 31 100.0 34 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACG 8547 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 8613 31 100.0 37 ............................... TGCAAGAGTTGATCAAGTCTGCAACTGATTGGCACAC 8681 31 100.0 36 ............................... TTACCAAGCGCCCTTACAATAGTCAGAGTTTGATCC 8748 31 100.0 36 ............................... TGCATTATGGTCAGTGGCCCACCAAGCAGCTAGACC 8815 31 100.0 35 ............................... TGCTGCATGCTTAGCAGTTGTAATTCCCTCTGCCT 8881 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 8948 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 9014 31 96.8 35 ............A.................. TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 9080 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 9145 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 9210 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 9275 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 9341 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 9407 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 9472 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGCGTCGCGTCCTCACGGGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //